Wall clock time and date at job start Tue Mar 31 2020 00:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.86746 * 2 1 4 4 O 1.43741 * 109.87913 * 121.00556 * 2 1 3 5 5 C 1.44378 * 106.97484 * 145.94342 * 4 2 1 6 6 C 1.54999 * 103.62828 * 319.85575 * 5 4 2 7 7 C 1.54099 * 109.88072 * 238.83911 * 2 1 3 8 8 H 1.09004 * 110.48846 * 119.86629 * 7 2 1 9 9 S 1.81397 * 110.48670 * 357.21975 * 7 2 1 10 10 C 1.81397 * 103.00082 * 175.00310 * 9 7 2 11 11 C 1.50699 * 109.47347 * 179.97438 * 10 9 7 12 12 C 1.38637 * 119.74835 * 269.72556 * 11 10 9 13 13 C 1.37627 * 120.24456 * 179.71699 * 12 11 10 14 14 C 1.40712 * 119.74754 * 0.57633 * 13 12 11 15 15 C 1.41393 * 120.24462 * 179.67885 * 14 13 12 16 16 H 1.07991 * 120.00305 * 24.39487 * 15 14 13 17 17 C 1.39949 * 119.99715 * 204.39422 * 15 14 13 18 18 N 1.30823 * 120.00004 * 17.86253 * 17 15 14 19 19 Si 1.86799 * 119.99750 * 197.86023 * 17 15 14 20 20 H 1.48495 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47095 * 120.00310 * 19 17 15 22 22 H 1.48505 * 109.47292 * 240.00049 * 19 17 15 23 23 C 1.40720 * 119.50781 * 359.70089 * 14 13 12 24 24 C 1.37613 * 119.74766 * 359.97438 * 23 14 13 25 25 H 1.08998 * 109.47286 * 300.44855 * 1 2 3 26 26 H 1.09000 * 109.47316 * 60.44949 * 1 2 3 27 27 H 1.08997 * 109.46631 * 180.45083 * 1 2 3 28 28 H 1.09000 * 110.62249 * 78.43722 * 5 4 2 29 29 H 1.09000 * 110.61457 * 201.28044 * 5 4 2 30 30 H 1.08996 * 110.90414 * 155.30381 * 6 5 4 31 31 H 1.08994 * 110.90592 * 278.90629 * 6 5 4 32 32 H 1.09007 * 109.47211 * 299.99872 * 10 9 7 33 33 H 1.09000 * 109.47557 * 60.00150 * 10 9 7 34 34 H 1.07993 * 119.87692 * 359.97438 * 12 11 10 35 35 H 1.08002 * 120.12082 * 180.27843 * 13 12 11 36 36 H 0.97008 * 119.99353 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.12182 * 180.02562 * 23 14 13 38 38 H 1.07999 * 119.87395 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0188 -0.6963 1.1586 5 6 3.2380 -1.3629 0.7666 6 6 2.9224 -1.8955 -0.6544 7 6 2.0541 -0.7499 -1.2401 8 1 2.6620 -0.0883 -1.8573 9 16 0.6739 -1.4280 -2.2022 10 6 1.4961 -2.1190 -3.6640 11 6 0.4657 -2.7310 -4.5777 12 6 0.1226 -4.0662 -4.4308 13 6 -0.8214 -4.6341 -5.2558 14 6 -1.4299 -3.8574 -6.2590 15 6 -2.3960 -4.4319 -7.1167 16 1 -2.9571 -5.2969 -6.7955 17 6 -2.6250 -3.8796 -8.3821 18 7 -1.7397 -3.0779 -8.9159 19 14 -4.1948 -4.2873 -9.3088 20 1 -5.0258 -5.2091 -8.4935 21 1 -4.9538 -3.0380 -9.5705 22 1 -3.8532 -4.9383 -10.5991 23 6 -1.0695 -2.5047 -6.4024 24 6 -0.1281 -1.9561 -5.5619 25 1 -0.3634 0.5208 0.8859 26 1 -0.3634 0.5068 -0.8940 27 1 -0.3632 -1.0276 0.0081 28 1 4.0686 -0.6577 0.7365 29 1 3.4600 -2.1869 1.4448 30 1 3.8371 -2.0285 -1.2319 31 1 2.3569 -2.8259 -0.6043 32 1 2.0252 -1.3257 -4.1923 33 1 2.2064 -2.8851 -3.3533 34 1 0.5947 -4.6618 -3.6636 35 1 -1.0904 -5.6733 -5.1367 36 1 -1.8983 -2.6954 -9.7931 37 1 -1.5306 -1.8993 -7.1688 38 1 0.1503 -0.9182 -5.6705 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342523814.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:02 Heat of formation + Delta-G solvation = -55.340060 kcal Electronic energy + Delta-G solvation = -18594.633652 eV Core-core repulsion = 15719.649794 eV Total energy + Delta-G solvation = -2874.983858 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.38080 -39.47947 -35.85484 -33.40093 -33.11126 -32.39440 -31.20325 -29.28733 -27.01413 -25.65475 -23.17544 -22.89789 -22.32161 -21.69009 -19.24894 -17.72423 -17.44878 -17.11714 -16.67991 -16.04653 -15.98402 -15.69560 -15.61610 -14.96599 -14.44788 -14.27560 -13.84494 -13.80347 -13.53938 -13.41290 -13.31356 -13.18543 -12.75203 -12.60582 -12.52465 -12.25294 -12.10580 -11.95677 -11.89030 -11.51219 -11.29962 -11.02390 -10.73470 -10.54123 -9.39044 -9.17991 -8.66966 -8.51794 -6.34771 0.44886 1.10742 1.17277 1.38074 1.50730 1.53479 1.84877 2.19912 2.74486 2.86968 3.39926 3.73794 3.75275 4.01099 4.10118 4.15731 4.18620 4.26013 4.38267 4.51364 4.53961 4.58186 4.67937 4.71917 4.80633 4.91769 4.99894 5.02679 5.07449 5.13543 5.30375 5.33471 5.42702 5.67743 5.90293 5.92510 6.07883 6.17888 6.35353 6.67135 6.91251 7.00174 8.29918 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043268 B = 0.003326 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.977327 B = 8415.539949 C = 8558.080361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 H 0.093 0.907 4 O -0.392 6.392 5 C 0.048 3.952 6 C -0.147 4.147 7 C -0.096 4.096 8 H 0.108 0.892 9 S -0.259 6.259 10 C -0.016 4.016 11 C -0.197 4.197 12 C -0.073 4.073 13 C -0.245 4.245 14 C 0.084 3.916 15 C -0.498 4.498 16 H 0.075 0.925 17 C 0.036 3.964 18 N -0.821 5.821 19 Si 0.982 3.018 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.264 1.264 23 C -0.191 4.191 24 C -0.087 4.087 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.289 0.711 37 H 0.101 0.899 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.582 5.587 12.345 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.040 3.960 3 H 0.111 0.889 4 O -0.312 6.312 5 C -0.029 4.029 6 C -0.187 4.187 7 C -0.225 4.225 8 H 0.126 0.874 9 S -0.027 6.027 10 C -0.162 4.162 11 C -0.200 4.200 12 C -0.093 4.093 13 C -0.264 4.264 14 C 0.081 3.919 15 C -0.527 4.527 16 H 0.094 0.906 17 C -0.180 4.180 18 N -0.447 5.447 19 Si 0.803 3.197 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.189 1.189 23 C -0.210 4.210 24 C -0.106 4.106 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.493 5.757 12.607 15.755 hybrid contribution 0.646 -0.286 -1.333 1.509 sum 8.139 5.470 11.273 14.942 Atomic orbital electron populations 1.21813 0.93787 1.02963 1.02877 1.22565 0.95400 0.95564 0.82521 0.88943 1.88879 1.40936 1.68216 1.33209 1.23689 0.87198 0.97122 0.94879 1.23618 1.00364 0.97530 0.97155 1.24788 0.97987 1.00334 0.99438 0.87366 1.87623 1.17071 1.75157 1.22867 1.22005 0.97663 1.01656 0.94897 1.18774 1.05536 0.94493 1.01186 1.20663 0.96608 0.94474 0.97520 1.21161 1.03439 0.98765 1.03066 1.17994 0.90722 0.91900 0.91313 1.19905 1.19367 1.13574 0.99870 0.90648 1.26775 1.00062 0.92988 0.98150 1.69879 1.33647 1.24974 1.16193 0.85156 0.77350 0.79321 0.77877 1.18231 1.18833 1.18873 1.21259 1.02485 0.95458 1.01823 1.20745 0.96593 0.98131 0.95170 0.90795 0.90286 0.92535 0.90185 0.87522 0.88181 0.90569 0.90200 0.89755 0.86713 0.88444 0.90017 0.88085 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.29 71.98 0.60 -3.10 16 2 C 0.10 2.11 4.06 30.97 0.13 2.23 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 O -0.39 -9.06 11.19 -148.98 -1.67 -10.73 16 5 C 0.05 0.80 7.71 72.67 0.56 1.36 16 6 C -0.15 -2.75 6.72 32.04 0.22 -2.53 16 7 C -0.10 -2.11 3.55 31.73 0.11 -2.00 16 8 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 9 S -0.26 -7.90 17.79 -56.49 -1.01 -8.90 16 10 C -0.02 -0.51 6.02 71.24 0.43 -0.08 16 11 C -0.20 -8.29 5.16 -19.67 -0.10 -8.39 16 12 C -0.07 -3.21 9.67 22.22 0.21 -2.99 16 13 C -0.24 -12.21 9.80 22.73 0.22 -11.99 16 14 C 0.08 4.59 5.58 -21.29 -0.12 4.47 16 15 C -0.50 -27.22 9.05 23.46 0.21 -27.00 16 16 H 0.08 4.00 7.91 -2.92 -0.02 3.97 16 17 C 0.04 1.80 5.14 85.26 0.44 2.24 16 18 N -0.82 -43.01 10.95 21.83 0.24 -42.77 16 19 Si 0.98 38.30 29.59 68.60 2.03 40.33 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 23 C -0.19 -10.16 8.70 22.73 0.20 -9.96 16 24 C -0.09 -4.02 9.67 22.22 0.21 -3.81 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.91 7.43 -2.39 -0.02 1.90 16 27 H 0.06 1.57 7.12 -2.39 -0.02 1.55 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.68 7.84 -2.39 -0.02 1.66 16 32 H 0.08 2.39 8.08 -2.39 -0.02 2.38 16 33 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.29 13.58 8.30 -92.70 -0.77 12.81 16 37 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16 38 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -60.30 323.87 3.95 -56.35 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 1.03 Total: 27.27 kcal Atomic # 6 Polarization: -64.87 SS G_CDS: 3.32 Total: -61.55 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.24 Total: -42.77 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.67 Total: -10.73 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.01 Total: -8.90 kcal Total: -60.30 3.95 -56.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523814.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.011 kcal (2) G-P(sol) polarization free energy of solvation -60.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds