Wall clock time and date at job start Tue Mar 31 2020 00:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.99366 * 2 1 4 4 O 1.43742 * 109.88106 * 238.91098 * 2 1 3 5 5 C 1.44379 * 106.97640 * 214.06374 * 4 2 1 6 6 C 1.54988 * 103.49108 * 40.06092 * 5 4 2 7 7 C 1.54103 * 109.88115 * 121.07903 * 2 1 3 8 8 H 1.08994 * 110.60252 * 240.19046 * 7 2 1 9 9 S 1.81403 * 110.48495 * 2.77804 * 7 2 1 10 10 C 1.81401 * 102.99998 * 181.21882 * 9 7 2 11 11 C 1.50696 * 109.47150 * 180.02562 * 10 9 7 12 12 C 1.38636 * 119.75284 * 90.00007 * 11 10 9 13 13 C 1.37612 * 120.25061 * 179.97438 * 12 11 10 14 14 C 1.40716 * 119.74896 * 0.02562 * 13 12 11 15 15 C 1.41387 * 120.24737 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00361 * 335.26298 * 15 14 13 17 17 C 1.39947 * 119.99948 * 155.26754 * 15 14 13 18 18 N 1.30827 * 120.00321 * 342.39658 * 17 15 14 19 19 Si 1.86803 * 120.00096 * 162.67614 * 17 15 14 20 20 H 1.48504 * 109.47033 * 265.29760 * 19 17 15 21 21 H 1.48497 * 109.47090 * 25.29558 * 19 17 15 22 22 H 1.48492 * 109.47363 * 145.29805 * 19 17 15 23 23 C 1.40723 * 119.50703 * 0.27312 * 14 13 12 24 24 C 1.37623 * 119.74228 * 359.44711 * 23 14 13 25 25 H 1.09003 * 109.47055 * 298.91932 * 1 2 3 26 26 H 1.09005 * 109.46955 * 58.91494 * 1 2 3 27 27 H 1.08992 * 109.47059 * 178.92390 * 1 2 3 28 28 H 1.09004 * 110.61479 * 281.55739 * 5 4 2 29 29 H 1.08998 * 110.61633 * 158.56412 * 5 4 2 30 30 H 1.08999 * 110.90761 * 204.77990 * 6 5 4 31 31 H 1.08999 * 110.91213 * 81.17520 * 6 5 4 32 32 H 1.08995 * 109.46821 * 59.99869 * 10 9 7 33 33 H 1.09002 * 109.47023 * 300.00179 * 10 9 7 34 34 H 1.08002 * 119.87180 * 359.95239 * 12 11 10 35 35 H 1.08009 * 120.12841 * 180.02562 * 13 12 11 36 36 H 0.96994 * 120.00704 * 180.27484 * 18 17 15 37 37 H 1.07993 * 120.12385 * 179.72522 * 23 14 13 38 38 H 1.07999 * 119.87127 * 180.27457 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1576 5 6 3.2379 -1.3642 -0.7646 6 6 2.9195 -1.8914 0.6577 7 6 2.0541 -0.7481 1.2412 8 1 2.6614 -0.0871 1.8593 9 16 0.6738 -1.4248 2.2043 10 6 1.5054 -2.2147 3.6097 11 6 0.4759 -2.8350 4.5186 12 6 0.0778 -4.1470 4.3129 13 6 -0.8613 -4.7239 5.1370 14 6 -1.4181 -3.9767 6.1914 15 6 -2.3833 -4.5591 7.0449 16 1 -2.9859 -5.3842 6.6950 17 6 -2.5577 -4.0663 8.3430 18 7 -1.6305 -3.3236 8.8909 19 14 -4.1111 -4.4756 9.2965 20 1 -5.1011 -3.3825 9.1226 21 1 -4.6837 -5.7477 8.7875 22 1 -3.7834 -4.6218 10.7374 23 6 -1.0111 -2.6439 6.3869 24 6 -0.0663 -2.0894 5.5539 25 1 -0.3633 0.4970 0.8995 26 1 -0.3633 0.5306 -0.8801 27 1 -0.3633 -1.0274 -0.0193 28 1 4.0685 -0.6589 -0.7355 29 1 3.4585 -2.1908 -1.4399 30 1 3.8331 -2.0223 1.2376 31 1 2.3540 -2.8220 0.6101 32 1 2.0748 -1.4670 4.1619 33 1 2.1805 -2.9886 3.2443 34 1 0.5059 -4.7183 3.5025 35 1 -1.1697 -5.7462 4.9752 36 1 -1.7496 -2.9854 9.7922 37 1 -1.4353 -2.0600 7.1903 38 1 0.2508 -1.0681 5.7048 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342523816.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:04 Heat of formation + Delta-G solvation = -55.504283 kcal Electronic energy + Delta-G solvation = -18603.050326 eV Core-core repulsion = 15728.059347 eV Total energy + Delta-G solvation = -2874.990979 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.39780 -39.48160 -35.85112 -33.41923 -33.12343 -32.39543 -31.20607 -29.28273 -27.01468 -25.65672 -23.18280 -22.89706 -22.31276 -21.69678 -19.24517 -17.73238 -17.45567 -17.11815 -16.68374 -16.05398 -15.98456 -15.69443 -15.61763 -14.96295 -14.44530 -14.26822 -13.84556 -13.80943 -13.55450 -13.41918 -13.30620 -13.19015 -12.76787 -12.61488 -12.51762 -12.24331 -12.11715 -11.95256 -11.88976 -11.51011 -11.29243 -11.03571 -10.72981 -10.54551 -9.39191 -9.17640 -8.66672 -8.52052 -6.35105 0.44720 1.10771 1.17481 1.37946 1.51362 1.51933 1.84802 2.19842 2.74629 2.86583 3.40332 3.73680 3.75462 4.01287 4.09721 4.15409 4.18531 4.26001 4.38118 4.51176 4.54064 4.58040 4.67477 4.71769 4.80663 4.91304 4.99778 5.02463 5.06721 5.13598 5.30412 5.33121 5.42467 5.67694 5.90191 5.92283 6.07719 6.17589 6.35360 6.66972 6.91196 7.00038 8.30354 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.043556 B = 0.003326 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.696221 B = 8415.858780 C = 8544.096372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 H 0.093 0.907 4 O -0.392 6.392 5 C 0.049 3.951 6 C -0.148 4.148 7 C -0.096 4.096 8 H 0.108 0.892 9 S -0.260 6.260 10 C -0.015 4.015 11 C -0.197 4.197 12 C -0.073 4.073 13 C -0.244 4.244 14 C 0.084 3.916 15 C -0.498 4.498 16 H 0.076 0.924 17 C 0.036 3.964 18 N -0.822 5.822 19 Si 0.983 3.017 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.266 1.266 23 C -0.190 4.190 24 C -0.087 4.087 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.289 0.711 37 H 0.100 0.900 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 5.871 -12.307 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.111 0.889 4 O -0.312 6.312 5 C -0.028 4.028 6 C -0.188 4.188 7 C -0.225 4.225 8 H 0.126 0.874 9 S -0.028 6.028 10 C -0.162 4.162 11 C -0.199 4.199 12 C -0.093 4.093 13 C -0.264 4.264 14 C 0.081 3.919 15 C -0.528 4.528 16 H 0.094 0.906 17 C -0.180 4.180 18 N -0.448 5.448 19 Si 0.803 3.197 20 H -0.187 1.187 21 H -0.182 1.182 22 H -0.191 1.191 23 C -0.209 4.209 24 C -0.106 4.106 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.420 6.075 -12.532 15.780 hybrid contribution 0.655 -0.351 1.311 1.507 sum 8.075 5.723 -11.221 14.962 Atomic orbital electron populations 1.21807 0.93773 1.03043 1.02839 1.22568 0.95398 0.95548 0.82502 0.88944 1.88878 1.40931 1.68167 1.33256 1.23694 0.87217 0.97138 0.94768 1.23548 1.00399 0.97569 0.97261 1.24721 0.98000 1.00366 0.99433 0.87372 1.87618 1.16594 1.71820 1.26758 1.22002 0.97610 1.01180 0.95405 1.18776 1.05663 0.95249 1.00246 1.20660 0.96472 0.94559 0.97579 1.21167 1.03853 0.99199 1.02159 1.17991 0.90768 0.91696 0.91437 1.19893 1.18438 1.16530 0.97935 0.90630 1.26772 0.99852 0.92851 0.98483 1.69868 1.32586 1.27080 1.15255 0.85182 0.77437 0.79833 0.77206 1.18734 1.18196 1.19065 1.21251 1.02404 0.95635 1.01659 1.20746 0.96703 0.98177 0.95021 0.90365 0.90762 0.92437 0.90149 0.87495 0.88213 0.90590 0.90216 0.89739 0.86713 0.88432 0.90022 0.88159 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.29 71.98 0.60 -3.09 16 2 C 0.10 2.11 4.06 30.97 0.13 2.24 16 3 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 4 O -0.39 -9.04 11.19 -148.98 -1.67 -10.71 16 5 C 0.05 0.81 7.72 72.66 0.56 1.37 16 6 C -0.15 -2.77 6.59 31.89 0.21 -2.56 16 7 C -0.10 -2.10 3.56 31.59 0.11 -1.99 16 8 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 9 S -0.26 -7.91 17.81 -56.49 -1.01 -8.92 16 10 C -0.02 -0.50 5.93 71.23 0.42 -0.08 16 11 C -0.20 -8.26 5.16 -19.68 -0.10 -8.37 16 12 C -0.07 -3.21 9.67 22.22 0.21 -2.99 16 13 C -0.24 -12.18 9.80 22.73 0.22 -11.96 16 14 C 0.08 4.61 5.57 -21.29 -0.12 4.49 16 15 C -0.50 -27.26 9.05 23.46 0.21 -27.05 16 16 H 0.08 4.00 7.90 -2.91 -0.02 3.98 16 17 C 0.04 1.81 5.14 85.26 0.44 2.25 16 18 N -0.82 -43.13 10.98 21.83 0.24 -42.89 16 19 Si 0.98 38.35 29.59 68.60 2.03 40.38 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 23 C -0.19 -10.12 8.69 22.73 0.20 -9.93 16 24 C -0.09 -4.03 9.67 22.22 0.21 -3.81 16 25 H 0.08 1.89 7.38 -2.39 -0.02 1.88 16 26 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.06 1.59 7.16 -2.39 -0.02 1.57 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.68 7.83 -2.39 -0.02 1.66 16 32 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 33 H 0.08 2.46 8.08 -2.39 -0.02 2.44 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.10 4.62 8.06 -2.91 -0.02 4.60 16 36 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 37 H 0.10 5.60 6.19 -2.91 -0.02 5.58 16 38 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -60.27 323.73 3.94 -56.33 By element: Atomic # 1 Polarization: 26.25 SS G_CDS: 1.03 Total: 27.28 kcal Atomic # 6 Polarization: -64.79 SS G_CDS: 3.31 Total: -61.48 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.24 Total: -42.89 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.67 Total: -10.71 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.01 Total: -8.92 kcal Total: -60.27 3.94 -56.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523816.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.829 kcal (2) G-P(sol) polarization free energy of solvation -60.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds