Wall clock time and date at job start Tue Mar 31 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.82482 * 2 1 4 4 O 1.43241 * 109.82421 * 120.98066 * 2 1 3 5 5 C 1.43649 * 109.96874 * 117.80226 * 4 2 1 6 6 C 1.55200 * 105.26135 * 24.28016 * 5 4 2 7 7 C 1.54381 * 109.82911 * 239.11134 * 2 1 3 8 8 H 1.09004 * 110.84939 * 337.52285 * 7 2 1 9 9 S 1.81398 * 110.84727 * 100.94161 * 7 2 1 10 10 C 1.81399 * 103.00089 * 182.22682 * 9 7 2 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.74666 * 269.73056 * 11 10 9 13 13 C 1.37618 * 120.24411 * 180.27170 * 12 11 10 14 14 C 1.40715 * 119.74574 * 359.97438 * 13 12 11 15 15 C 1.41399 * 120.24328 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00121 * 204.35684 * 15 14 13 17 17 C 1.39954 * 119.99908 * 24.35803 * 15 14 13 18 18 N 1.30818 * 120.00050 * 17.86988 * 17 15 14 19 19 Si 1.86796 * 119.99715 * 197.87336 * 17 15 14 20 20 H 1.48497 * 109.47545 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47118 * 120.00095 * 19 17 15 22 22 H 1.48507 * 109.47131 * 239.99910 * 19 17 15 23 23 C 1.40711 * 119.51400 * 0.02562 * 14 13 12 24 24 C 1.37619 * 119.74212 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47637 * 180.88861 * 1 2 3 26 26 H 1.09006 * 109.47330 * 300.88901 * 1 2 3 27 27 H 1.09004 * 109.46897 * 60.88263 * 1 2 3 28 28 H 1.09000 * 110.31197 * 143.33816 * 5 4 2 29 29 H 1.09002 * 110.30973 * 265.40512 * 5 4 2 30 30 H 1.09001 * 111.30751 * 205.88321 * 6 5 4 31 31 H 1.09001 * 111.05549 * 81.65035 * 6 5 4 32 32 H 1.09006 * 109.46852 * 59.99848 * 10 9 7 33 33 H 1.09000 * 109.47231 * 300.00231 * 10 9 7 34 34 H 1.07993 * 119.87908 * 0.24953 * 12 11 10 35 35 H 1.08003 * 120.12437 * 179.97438 * 13 12 11 36 36 H 0.97001 * 119.99980 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.12684 * 179.97438 * 23 14 13 38 38 H 1.08003 * 119.87265 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 8 2.0158 -0.6936 1.1553 5 6 2.7746 -1.8452 0.7531 6 6 3.2722 -1.5257 -0.6818 7 6 2.0537 -0.7456 -1.2463 8 1 1.2998 -1.4310 -1.6336 9 16 2.5754 0.4271 -2.5282 10 6 3.0769 -0.6572 -3.8933 11 6 3.5451 0.1812 -5.0548 12 6 2.6372 0.5856 -6.0213 13 6 3.0547 1.3466 -7.0892 14 6 4.4085 1.7147 -7.1975 15 6 4.8488 2.4969 -8.2900 16 1 5.8823 2.4576 -8.6006 17 6 3.9450 3.3222 -8.9689 18 7 2.8082 3.6471 -8.4091 19 14 4.3621 3.9596 -10.6745 20 1 5.6973 3.4516 -11.0801 21 1 3.3385 3.4902 -11.6424 22 1 4.3825 5.4444 -10.6567 23 6 5.3210 1.2986 -6.2105 24 6 4.8814 0.5370 -5.1518 25 1 -0.3634 -1.0275 0.0159 26 1 -0.3634 0.5276 0.8819 27 1 -0.3633 0.5001 -0.8978 28 1 3.6208 -1.9938 1.4238 29 1 2.1403 -2.7316 0.7432 30 1 3.4524 -2.4378 -1.2508 31 1 4.1631 -0.8982 -0.6568 32 1 2.2283 -1.2670 -4.2036 33 1 3.8887 -1.3053 -3.5631 34 1 1.5987 0.3019 -5.9362 35 1 2.3458 1.6602 -7.8413 36 1 2.1817 4.2188 -8.8798 37 1 6.3625 1.5750 -6.2839 38 1 5.5801 0.2162 -4.3933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342523818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:07 Heat of formation + Delta-G solvation = -45.500391 kcal Electronic energy + Delta-G solvation = -18480.240541 eV Core-core repulsion = 15605.683364 eV Total energy + Delta-G solvation = -2874.557178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.50901 -37.67608 -34.06050 -32.46372 -31.66086 -31.19885 -29.36917 -27.59517 -26.21752 -24.01610 -22.04872 -21.32876 -21.06342 -20.00413 -17.38536 -17.30081 -16.40174 -15.43848 -15.26084 -14.51969 -14.38088 -14.10984 -13.91483 -13.86803 -13.59602 -12.87747 -12.66504 -12.44932 -12.18048 -12.06035 -11.98724 -11.63581 -11.62067 -11.21203 -11.13556 -11.06012 -11.01752 -10.54723 -10.45710 -9.74615 -9.66075 -9.55539 -9.47164 -9.18107 -7.55462 -7.36980 -7.28586 -6.85831 -4.43275 1.76469 2.66276 2.93683 3.01187 3.03449 3.08220 3.33393 3.72469 3.86184 4.28015 4.55154 4.60418 4.86167 5.00514 5.03758 5.23282 5.45527 5.47394 5.51713 5.56539 5.58915 5.69255 5.73708 5.87252 6.00282 6.07849 6.09694 6.27292 6.31788 6.86202 6.87897 6.98032 7.18563 7.26885 7.52543 7.75373 7.96634 8.01203 8.20008 8.54714 8.79391 8.87587 10.07736 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.003300 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.711949 B = 8482.654547 C = 8859.080622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 H 0.089 0.911 4 O -0.378 6.378 5 C 0.054 3.946 6 C -0.149 4.149 7 C -0.104 4.104 8 H 0.094 0.906 9 S -0.249 6.249 10 C -0.002 4.002 11 C -0.213 4.213 12 C -0.078 4.078 13 C -0.168 4.168 14 C 0.117 3.883 15 C -0.455 4.455 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.784 5.784 19 Si 0.909 3.091 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.273 1.273 23 C -0.228 4.228 24 C -0.066 4.066 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.282 0.718 37 H 0.094 0.906 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.555 -8.048 10.392 13.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.043 3.957 3 H 0.107 0.893 4 O -0.298 6.298 5 C -0.024 4.024 6 C -0.189 4.189 7 C -0.233 4.233 8 H 0.112 0.888 9 S -0.016 6.016 10 C -0.148 4.148 11 C -0.217 4.217 12 C -0.098 4.098 13 C -0.188 4.188 14 C 0.114 3.886 15 C -0.484 4.484 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.199 1.199 23 C -0.248 4.248 24 C -0.086 4.086 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.851 -6.736 10.675 12.941 hybrid contribution 0.076 -1.028 -1.039 1.464 sum -2.775 -7.764 9.636 12.682 Atomic orbital electron populations 1.22138 0.94302 1.02451 1.02872 1.22471 0.94366 0.96308 0.82531 0.89324 1.88428 1.70956 1.40439 1.29940 1.23373 0.95020 0.88837 0.95184 1.23690 0.98268 1.01072 0.95855 1.24793 0.99907 1.00149 0.98485 0.88800 1.87472 1.84926 1.16896 1.12346 1.22009 1.01719 0.97191 0.93893 1.18379 0.94293 1.11279 0.97798 1.20512 0.96529 0.97918 0.94861 1.21292 0.97089 1.01164 0.99219 1.17675 0.91631 0.88775 0.90567 1.19710 0.96794 1.20487 1.11451 0.90176 1.25970 0.94243 0.94909 0.99301 1.69836 1.08118 1.26358 1.36569 0.86246 0.80003 0.78820 0.81619 1.18298 1.19598 1.19878 1.20956 0.98797 1.07776 0.97258 1.20359 0.93954 0.97454 0.96854 0.92396 0.91749 0.90767 0.89599 0.92397 0.89860 0.89030 0.91287 0.91259 0.89346 0.86313 0.90689 0.88804 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.44 37.16 0.35 -1.41 16 2 C 0.10 1.29 3.79 -26.01 -0.10 1.19 16 3 H 0.09 1.23 7.77 -51.93 -0.40 0.83 16 4 O -0.38 -4.92 11.02 -35.23 -0.39 -5.31 16 5 C 0.05 0.55 7.78 38.32 0.30 0.85 16 6 C -0.15 -1.66 6.60 -24.34 -0.16 -1.82 16 7 C -0.10 -1.34 3.02 -24.79 -0.07 -1.42 16 8 H 0.09 1.14 7.85 -51.93 -0.41 0.74 16 9 S -0.25 -4.19 20.99 -107.50 -2.26 -6.45 16 10 C 0.00 -0.03 6.01 36.01 0.22 0.19 16 11 C -0.21 -4.55 5.16 -104.33 -0.54 -5.09 16 12 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 13 C -0.17 -4.29 8.70 -38.87 -0.34 -4.62 16 14 C 0.12 3.06 5.58 -106.83 -0.60 2.46 16 15 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 16 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 17 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 18 N -0.78 -19.89 10.95 55.55 0.61 -19.28 16 19 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 24 C -0.07 -1.46 9.67 -39.66 -0.38 -1.84 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 32 H 0.07 1.11 8.08 -51.92 -0.42 0.69 16 33 H 0.07 1.08 8.08 -51.92 -0.42 0.66 16 34 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -27.00 328.47 -10.38 -37.38 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.74 Total: 5.57 kcal Atomic # 6 Polarization: -27.46 SS G_CDS: -2.52 Total: -29.98 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.61 Total: -19.28 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: -0.39 Total: -5.31 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: -4.19 SS G_CDS: -2.26 Total: -6.45 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.00 -10.38 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.122 kcal (2) G-P(sol) polarization free energy of solvation -26.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds