Wall clock time and date at job start Tue Mar 31 2020 00:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.82482 * 2 1 4 4 O 1.43241 * 109.82421 * 120.98066 * 2 1 3 5 5 C 1.43649 * 109.96874 * 117.80226 * 4 2 1 6 6 C 1.55200 * 105.26135 * 24.28016 * 5 4 2 7 7 C 1.54381 * 109.82911 * 239.11134 * 2 1 3 8 8 H 1.09004 * 110.84939 * 337.52285 * 7 2 1 9 9 S 1.81398 * 110.84727 * 100.94161 * 7 2 1 10 10 C 1.81399 * 103.00089 * 182.22682 * 9 7 2 11 11 C 1.50701 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.74666 * 269.73056 * 11 10 9 13 13 C 1.37618 * 120.24411 * 180.27170 * 12 11 10 14 14 C 1.40715 * 119.74574 * 359.97438 * 13 12 11 15 15 C 1.41399 * 120.24328 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00121 * 204.35684 * 15 14 13 17 17 C 1.39954 * 119.99908 * 24.35803 * 15 14 13 18 18 N 1.30818 * 120.00050 * 17.86988 * 17 15 14 19 19 Si 1.86796 * 119.99715 * 197.87336 * 17 15 14 20 20 H 1.48497 * 109.47545 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47118 * 120.00095 * 19 17 15 22 22 H 1.48507 * 109.47131 * 239.99910 * 19 17 15 23 23 C 1.40711 * 119.51400 * 0.02562 * 14 13 12 24 24 C 1.37619 * 119.74212 * 0.02562 * 23 14 13 25 25 H 1.08998 * 109.47637 * 180.88861 * 1 2 3 26 26 H 1.09006 * 109.47330 * 300.88901 * 1 2 3 27 27 H 1.09004 * 109.46897 * 60.88263 * 1 2 3 28 28 H 1.09000 * 110.31197 * 143.33816 * 5 4 2 29 29 H 1.09002 * 110.30973 * 265.40512 * 5 4 2 30 30 H 1.09001 * 111.30751 * 205.88321 * 6 5 4 31 31 H 1.09001 * 111.05549 * 81.65035 * 6 5 4 32 32 H 1.09006 * 109.46852 * 59.99848 * 10 9 7 33 33 H 1.09000 * 109.47231 * 300.00231 * 10 9 7 34 34 H 1.07993 * 119.87908 * 0.24953 * 12 11 10 35 35 H 1.08003 * 120.12437 * 179.97438 * 13 12 11 36 36 H 0.97001 * 119.99980 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.12684 * 179.97438 * 23 14 13 38 38 H 1.08003 * 119.87265 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8996 1.0253 0.0000 4 8 2.0158 -0.6936 1.1553 5 6 2.7746 -1.8452 0.7531 6 6 3.2722 -1.5257 -0.6818 7 6 2.0537 -0.7456 -1.2463 8 1 1.2998 -1.4310 -1.6336 9 16 2.5754 0.4271 -2.5282 10 6 3.0769 -0.6572 -3.8933 11 6 3.5451 0.1812 -5.0548 12 6 2.6372 0.5856 -6.0213 13 6 3.0547 1.3466 -7.0892 14 6 4.4085 1.7147 -7.1975 15 6 4.8488 2.4969 -8.2900 16 1 5.8823 2.4576 -8.6006 17 6 3.9450 3.3222 -8.9689 18 7 2.8082 3.6471 -8.4091 19 14 4.3621 3.9596 -10.6745 20 1 5.6973 3.4516 -11.0801 21 1 3.3385 3.4902 -11.6424 22 1 4.3825 5.4444 -10.6567 23 6 5.3210 1.2986 -6.2105 24 6 4.8814 0.5370 -5.1518 25 1 -0.3634 -1.0275 0.0159 26 1 -0.3634 0.5276 0.8819 27 1 -0.3633 0.5001 -0.8978 28 1 3.6208 -1.9938 1.4238 29 1 2.1403 -2.7316 0.7432 30 1 3.4524 -2.4378 -1.2508 31 1 4.1631 -0.8982 -0.6568 32 1 2.2283 -1.2670 -4.2036 33 1 3.8887 -1.3053 -3.5631 34 1 1.5987 0.3019 -5.9362 35 1 2.3458 1.6602 -7.8413 36 1 2.1817 4.2188 -8.8798 37 1 6.3625 1.5750 -6.2839 38 1 5.5801 0.2162 -4.3933 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342523818.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:07 Heat of formation + Delta-G solvation = -57.779350 kcal Electronic energy + Delta-G solvation = -18480.772997 eV Core-core repulsion = 15605.683364 eV Total energy + Delta-G solvation = -2875.089633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44418 -39.48817 -35.86349 -33.44192 -33.05006 -32.41967 -31.20931 -29.30416 -27.12147 -25.74659 -22.98235 -22.88431 -22.43875 -21.64980 -19.25317 -18.31507 -17.45365 -17.16895 -16.45653 -16.02739 -15.70697 -15.63946 -15.39591 -14.95313 -14.69912 -14.35080 -13.93435 -13.84445 -13.72160 -13.47687 -13.16415 -12.97919 -12.91810 -12.75821 -12.52626 -12.36806 -12.15588 -11.98932 -11.90543 -11.47298 -11.30859 -11.02968 -10.76342 -10.57209 -9.39564 -9.20123 -8.67221 -8.62500 -6.35637 0.38447 1.09837 1.15650 1.38160 1.49009 1.53573 1.80440 2.19646 2.74119 2.83036 3.34460 3.64630 3.73602 3.96236 4.06468 4.14686 4.15950 4.22959 4.31775 4.50794 4.56957 4.58086 4.65551 4.68200 4.79091 4.86312 4.99860 5.02635 5.10426 5.13091 5.21088 5.33118 5.42112 5.67314 5.91702 5.96765 6.07476 6.16921 6.34879 6.66763 6.90629 6.99656 8.29452 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041799 B = 0.003300 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.711949 B = 8482.654547 C = 8859.080622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 H 0.070 0.930 4 O -0.394 6.394 5 C 0.051 3.949 6 C -0.147 4.147 7 C -0.088 4.088 8 H 0.108 0.892 9 S -0.290 6.290 10 C 0.005 3.995 11 C -0.202 4.202 12 C -0.085 4.085 13 C -0.192 4.192 14 C 0.084 3.916 15 C -0.496 4.496 16 H 0.077 0.923 17 C 0.035 3.965 18 N -0.821 5.821 19 Si 0.984 3.016 20 H -0.257 1.257 21 H -0.263 1.263 22 H -0.266 1.266 23 C -0.245 4.245 24 C -0.070 4.070 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.289 0.711 37 H 0.098 0.902 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.805 -9.719 11.668 15.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.042 3.958 3 H 0.088 0.912 4 O -0.314 6.314 5 C -0.026 4.026 6 C -0.186 4.186 7 C -0.217 4.217 8 H 0.126 0.874 9 S -0.058 6.058 10 C -0.142 4.142 11 C -0.205 4.205 12 C -0.105 4.105 13 C -0.212 4.212 14 C 0.082 3.918 15 C -0.525 4.525 16 H 0.095 0.905 17 C -0.181 4.181 18 N -0.447 5.447 19 Si 0.804 3.196 20 H -0.181 1.181 21 H -0.188 1.188 22 H -0.191 1.191 23 C -0.265 4.265 24 C -0.090 4.090 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.086 -8.415 11.944 14.933 hybrid contribution 0.111 -0.638 -1.156 1.325 sum -2.976 -9.052 10.788 14.394 Atomic orbital electron populations 1.22103 0.93010 1.03265 1.02988 1.22419 0.95345 0.95495 0.82529 0.91171 1.88418 1.71431 1.41473 1.30088 1.23573 0.95705 0.88493 0.94807 1.23691 0.96934 1.01355 0.96600 1.24808 1.01090 0.99125 0.96702 0.87395 1.87591 1.85424 1.18806 1.14021 1.21922 1.03142 0.96661 0.92450 1.18767 0.93733 1.09655 0.98340 1.20755 0.97797 0.97394 0.94521 1.21262 0.96857 1.02849 1.00185 1.18006 0.92421 0.89798 0.91621 1.19930 0.97254 1.22252 1.13095 0.90482 1.26805 0.93834 0.94576 1.02878 1.69887 1.09223 1.27315 1.38232 0.85138 0.79776 0.78304 0.76378 1.18060 1.18758 1.19081 1.21167 0.98941 1.08591 0.97771 1.20677 0.94953 0.96699 0.96635 0.91207 0.91269 0.91073 0.88009 0.90514 0.87882 0.90073 0.89657 0.88985 0.87667 0.88086 0.90011 0.88365 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 9.44 71.98 0.68 -2.42 16 2 C 0.10 2.36 3.79 31.06 0.12 2.47 16 3 H 0.07 1.89 7.77 -2.39 -0.02 1.87 16 4 O -0.39 -9.25 11.02 -148.98 -1.64 -10.89 16 5 C 0.05 0.88 7.78 72.74 0.57 1.44 16 6 C -0.15 -2.75 6.60 32.14 0.21 -2.54 16 7 C -0.09 -2.01 3.02 31.85 0.10 -1.92 16 8 H 0.11 2.21 7.85 -2.39 -0.02 2.20 16 9 S -0.29 -9.19 20.99 -56.49 -1.19 -10.37 16 10 C 0.00 0.16 6.01 71.24 0.43 0.58 16 11 C -0.20 -8.35 5.16 -19.68 -0.10 -8.45 16 12 C -0.08 -3.90 9.67 22.22 0.21 -3.68 16 13 C -0.19 -10.14 8.70 22.73 0.20 -9.94 16 14 C 0.08 4.59 5.58 -21.29 -0.12 4.47 16 15 C -0.50 -26.85 9.05 23.46 0.21 -26.64 16 16 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.03 1.74 5.14 85.26 0.44 2.18 16 18 N -0.82 -43.19 10.95 21.83 0.24 -42.95 16 19 Si 0.98 38.02 29.59 68.60 2.03 40.05 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 23 C -0.24 -12.06 9.80 22.73 0.22 -11.84 16 24 C -0.07 -3.01 9.67 22.22 0.21 -2.80 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.73 8.03 -2.39 -0.02 1.71 16 32 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 33 H 0.09 2.51 8.08 -2.39 -0.02 2.50 16 34 H 0.11 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.10 5.59 6.16 -2.91 -0.02 5.58 16 36 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 37 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -60.04 328.47 3.85 -56.19 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 1.03 Total: 27.04 kcal Atomic # 6 Polarization: -62.44 SS G_CDS: 3.38 Total: -59.06 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 0.24 Total: -42.95 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.64 Total: -10.89 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.19 Total: -10.37 kcal Total: -60.04 3.85 -56.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523818.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.587 kcal (2) G-P(sol) polarization free energy of solvation -60.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds