Wall clock time and date at job start Tue Mar 31 2020 00:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.41807 * 2 1 4 4 O 1.44417 * 110.37506 * 237.68715 * 2 1 3 5 5 C 1.44419 * 105.27972 * 200.65760 * 4 2 1 6 6 C 1.54479 * 104.80170 * 40.51014 * 5 4 2 7 7 C 1.54485 * 110.37166 * 122.30686 * 2 1 3 8 8 H 1.08998 * 110.50815 * 24.16423 * 7 2 1 9 9 S 1.81400 * 110.50877 * 261.45520 * 7 2 1 10 10 C 1.81401 * 102.99769 * 178.90302 * 9 7 2 11 11 C 1.50700 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.38631 * 119.74775 * 269.72667 * 11 10 9 13 13 C 1.37616 * 120.24528 * 179.71842 * 12 11 10 14 14 C 1.40721 * 119.74660 * 0.53072 * 13 12 11 15 15 C 1.41396 * 120.24589 * 179.72330 * 14 13 12 16 16 H 1.08001 * 120.00117 * 204.40671 * 15 14 13 17 17 C 1.39948 * 120.00033 * 24.40810 * 15 14 13 18 18 N 1.30824 * 119.99959 * 17.84444 * 17 15 14 19 19 Si 1.86797 * 119.99844 * 197.84627 * 17 15 14 20 20 H 1.48499 * 109.47081 * 60.00193 * 19 17 15 21 21 H 1.48503 * 109.46803 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47132 * 299.99870 * 19 17 15 23 23 C 1.40719 * 119.51051 * 359.74731 * 14 13 12 24 24 C 1.37611 * 119.74240 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47120 * 297.69171 * 1 2 3 26 26 H 1.08999 * 109.46804 * 57.69475 * 1 2 3 27 27 H 1.09004 * 109.46606 * 177.69111 * 1 2 3 28 28 H 1.09003 * 110.37123 * 281.68175 * 5 4 2 29 29 H 1.09001 * 110.37585 * 159.34598 * 5 4 2 30 30 H 1.09000 * 110.51254 * 217.37788 * 6 5 4 31 31 H 1.09003 * 110.50811 * 94.66906 * 6 5 4 32 32 H 1.08999 * 109.47233 * 300.00181 * 10 9 7 33 33 H 1.08996 * 109.47041 * 59.99892 * 10 9 7 34 34 H 1.07996 * 119.87602 * 359.97438 * 12 11 10 35 35 H 1.08007 * 120.13013 * 180.28184 * 13 12 11 36 36 H 0.96994 * 120.00076 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.12641 * 180.02562 * 23 14 13 38 38 H 1.08000 * 119.87572 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1442 5 6 3.3874 -1.0871 -0.7994 6 6 3.3178 -1.5056 0.6860 7 6 2.0678 -0.7740 1.2240 8 1 1.3276 -1.4918 1.5773 9 16 2.5257 0.3746 2.5513 10 6 3.0873 -0.7329 3.8736 11 6 3.5087 0.0838 5.0679 12 6 4.8245 0.5048 5.1837 13 6 5.2192 1.2560 6.2671 14 6 4.2841 1.5871 7.2651 15 6 4.6795 2.3535 8.3856 16 1 4.1250 2.2846 9.3098 17 6 5.7895 3.2012 8.2971 18 7 6.2476 3.5588 7.1250 19 14 6.6168 3.8222 9.8524 20 1 7.1096 2.6676 10.6457 21 1 7.7606 4.6969 9.4892 22 1 5.6383 4.5953 10.6587 23 6 2.9525 1.1495 7.1399 24 6 2.5789 0.4042 6.0451 25 1 -0.3633 0.4775 0.9099 26 1 -0.3633 0.5492 -0.8686 27 1 -0.3633 -1.0269 -0.0414 28 1 4.0525 -0.2323 -0.9220 29 1 3.7242 -1.9223 -1.4136 30 1 4.2109 -1.1772 1.2176 31 1 3.1955 -2.5852 0.7733 32 1 2.2737 -1.3999 4.1589 33 1 3.9329 -1.3223 3.5193 34 1 5.5415 0.2457 4.4187 35 1 6.2438 1.5868 6.3531 36 1 7.0167 4.1466 7.0636 37 1 2.2265 1.3982 7.8997 38 1 1.5574 0.0675 5.9467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342523820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:09 Heat of formation + Delta-G solvation = -45.329001 kcal Electronic energy + Delta-G solvation = -18516.115029 eV Core-core repulsion = 15641.565283 eV Total energy + Delta-G solvation = -2874.549746 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.44966 -37.67144 -34.05709 -32.43119 -31.70548 -31.18093 -29.36683 -27.58866 -26.10295 -24.00793 -22.17586 -21.27691 -21.03373 -20.03559 -17.37887 -17.05483 -15.97269 -15.69747 -15.38931 -14.92634 -14.37425 -14.21836 -13.91563 -13.84705 -13.29644 -12.72065 -12.60687 -12.49873 -12.20560 -12.01961 -12.00794 -11.62434 -11.39899 -11.23866 -11.13344 -11.07536 -10.97386 -10.57486 -10.42748 -9.91653 -9.73766 -9.50430 -9.46086 -9.17303 -7.55073 -7.36619 -7.27741 -6.85299 -4.43059 1.79321 2.68575 2.96181 3.01242 3.02948 3.05220 3.34713 3.83452 3.86166 4.40134 4.52032 4.57897 4.88690 5.01435 5.11368 5.24890 5.45580 5.49942 5.52766 5.59157 5.65924 5.74446 5.78665 5.83967 5.89248 6.04332 6.11438 6.27806 6.31957 6.67203 6.88125 6.98234 7.18921 7.27309 7.52715 7.75826 7.96441 8.01592 8.20360 8.54684 8.79544 8.87940 10.08272 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.003353 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.568681 B = 8348.396241 C = 8567.679642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.095 3.905 3 H 0.078 0.922 4 O -0.373 6.373 5 C 0.049 3.951 6 C -0.151 4.151 7 C -0.101 4.101 8 H 0.092 0.908 9 S -0.256 6.256 10 C -0.001 4.001 11 C -0.213 4.213 12 C -0.078 4.078 13 C -0.168 4.168 14 C 0.117 3.883 15 C -0.456 4.456 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.228 4.228 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.283 0.717 37 H 0.094 0.906 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 -6.922 -9.963 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.037 3.963 3 H 0.096 0.904 4 O -0.292 6.292 5 C -0.028 4.028 6 C -0.191 4.191 7 C -0.230 4.230 8 H 0.111 0.889 9 S -0.024 6.024 10 C -0.147 4.147 11 C -0.217 4.217 12 C -0.098 4.098 13 C -0.188 4.188 14 C 0.114 3.886 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.734 3.266 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.248 4.248 24 C -0.086 4.086 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.067 -5.721 -10.361 12.515 hybrid contribution 0.618 -0.911 0.843 1.386 sum -3.449 -6.632 -9.518 12.103 Atomic orbital electron populations 1.21810 0.92596 1.02833 1.02957 1.22763 0.95423 0.95375 0.82729 0.90386 1.89111 1.27252 1.74725 1.38125 1.23357 0.84680 1.00057 0.94742 1.23358 0.98105 1.00804 0.96801 1.24621 0.99802 1.00231 0.98374 0.88949 1.87440 1.85010 1.17644 1.12347 1.22004 1.01565 0.96992 0.94146 1.18385 0.95098 1.11638 0.96596 1.20504 0.94127 0.97890 0.97301 1.21289 1.00028 1.01367 0.96080 1.17664 0.90278 0.88696 0.91970 1.19650 1.10054 1.20269 0.98596 0.90248 1.25961 0.96096 0.94901 0.97415 1.69820 1.20545 1.25393 1.25173 0.86336 0.79084 0.79264 0.81910 1.18728 1.20230 1.18894 1.20953 0.95997 1.08016 0.99833 1.20363 0.96420 0.97572 0.94292 0.90411 0.91717 0.91918 0.91843 0.89119 0.89333 0.90639 0.91341 0.91229 0.89380 0.86319 0.90586 0.88815 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.52 37.16 0.35 -1.21 16 2 C 0.10 1.21 3.49 -25.95 -0.09 1.12 16 3 H 0.08 1.06 7.83 -51.93 -0.41 0.65 16 4 O -0.37 -4.88 11.34 -35.23 -0.40 -5.28 16 5 C 0.05 0.54 7.63 37.93 0.29 0.83 16 6 C -0.15 -1.75 6.63 -25.17 -0.17 -1.92 16 7 C -0.10 -1.33 3.18 -25.16 -0.08 -1.41 16 8 H 0.09 1.16 7.87 -51.93 -0.41 0.76 16 9 S -0.26 -4.31 20.79 -107.50 -2.23 -6.54 16 10 C 0.00 -0.01 5.93 36.01 0.21 0.20 16 11 C -0.21 -4.56 5.16 -104.33 -0.54 -5.09 16 12 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 13 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 14 C 0.12 3.07 5.58 -106.82 -0.60 2.47 16 15 C -0.46 -11.84 9.05 -37.74 -0.34 -12.18 16 16 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 17 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.78 -19.90 10.95 55.55 0.61 -19.30 16 19 Si 0.91 18.16 29.59 -169.99 -5.03 13.13 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.23 -5.52 9.80 -38.87 -0.38 -5.90 16 24 C -0.07 -1.47 9.67 -39.66 -0.38 -1.85 16 25 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.09 7.38 -51.93 -0.38 0.71 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.10 8.08 -51.92 -0.42 0.68 16 33 H 0.07 1.11 7.79 -51.93 -0.40 0.71 16 34 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.12 3.12 6.16 -52.48 -0.32 2.79 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -26.95 327.46 -10.35 -37.30 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.70 Total: 5.72 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: -2.53 Total: -29.97 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.61 Total: -19.30 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.40 Total: -5.28 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: -4.31 SS G_CDS: -2.23 Total: -6.54 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.95 -10.35 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.027 kcal (2) G-P(sol) polarization free energy of solvation -26.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds