Wall clock time and date at job start Tue Mar 31 2020 00:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.41807 * 2 1 4 4 O 1.44417 * 110.37506 * 237.68715 * 2 1 3 5 5 C 1.44419 * 105.27972 * 200.65760 * 4 2 1 6 6 C 1.54479 * 104.80170 * 40.51014 * 5 4 2 7 7 C 1.54485 * 110.37166 * 122.30686 * 2 1 3 8 8 H 1.08998 * 110.50815 * 24.16423 * 7 2 1 9 9 S 1.81400 * 110.50877 * 261.45520 * 7 2 1 10 10 C 1.81401 * 102.99769 * 178.90302 * 9 7 2 11 11 C 1.50700 * 109.47306 * 180.02562 * 10 9 7 12 12 C 1.38631 * 119.74775 * 269.72667 * 11 10 9 13 13 C 1.37616 * 120.24528 * 179.71842 * 12 11 10 14 14 C 1.40721 * 119.74660 * 0.53072 * 13 12 11 15 15 C 1.41396 * 120.24589 * 179.72330 * 14 13 12 16 16 H 1.08001 * 120.00117 * 204.40671 * 15 14 13 17 17 C 1.39948 * 120.00033 * 24.40810 * 15 14 13 18 18 N 1.30824 * 119.99959 * 17.84444 * 17 15 14 19 19 Si 1.86797 * 119.99844 * 197.84627 * 17 15 14 20 20 H 1.48499 * 109.47081 * 60.00193 * 19 17 15 21 21 H 1.48503 * 109.46803 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47132 * 299.99870 * 19 17 15 23 23 C 1.40719 * 119.51051 * 359.74731 * 14 13 12 24 24 C 1.37611 * 119.74240 * 359.97438 * 23 14 13 25 25 H 1.08995 * 109.47120 * 297.69171 * 1 2 3 26 26 H 1.08999 * 109.46804 * 57.69475 * 1 2 3 27 27 H 1.09004 * 109.46606 * 177.69111 * 1 2 3 28 28 H 1.09003 * 110.37123 * 281.68175 * 5 4 2 29 29 H 1.09001 * 110.37585 * 159.34598 * 5 4 2 30 30 H 1.09000 * 110.51254 * 217.37788 * 6 5 4 31 31 H 1.09003 * 110.50811 * 94.66906 * 6 5 4 32 32 H 1.08999 * 109.47233 * 300.00181 * 10 9 7 33 33 H 1.08996 * 109.47041 * 59.99892 * 10 9 7 34 34 H 1.07996 * 119.87602 * 359.97438 * 12 11 10 35 35 H 1.08007 * 120.13013 * 180.28184 * 13 12 11 36 36 H 0.96994 * 120.00076 * 179.97438 * 18 17 15 37 37 H 1.07995 * 120.12641 * 180.02562 * 23 14 13 38 38 H 1.08000 * 119.87572 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1442 5 6 3.3874 -1.0871 -0.7994 6 6 3.3178 -1.5056 0.6860 7 6 2.0678 -0.7740 1.2240 8 1 1.3276 -1.4918 1.5773 9 16 2.5257 0.3746 2.5513 10 6 3.0873 -0.7329 3.8736 11 6 3.5087 0.0838 5.0679 12 6 4.8245 0.5048 5.1837 13 6 5.2192 1.2560 6.2671 14 6 4.2841 1.5871 7.2651 15 6 4.6795 2.3535 8.3856 16 1 4.1250 2.2846 9.3098 17 6 5.7895 3.2012 8.2971 18 7 6.2476 3.5588 7.1250 19 14 6.6168 3.8222 9.8524 20 1 7.1096 2.6676 10.6457 21 1 7.7606 4.6969 9.4892 22 1 5.6383 4.5953 10.6587 23 6 2.9525 1.1495 7.1399 24 6 2.5789 0.4042 6.0451 25 1 -0.3633 0.4775 0.9099 26 1 -0.3633 0.5492 -0.8686 27 1 -0.3633 -1.0269 -0.0414 28 1 4.0525 -0.2323 -0.9220 29 1 3.7242 -1.9223 -1.4136 30 1 4.2109 -1.1772 1.2176 31 1 3.1955 -2.5852 0.7733 32 1 2.2737 -1.3999 4.1589 33 1 3.9329 -1.3223 3.5193 34 1 5.5415 0.2457 4.4187 35 1 6.2438 1.5868 6.3531 36 1 7.0167 4.1466 7.0636 37 1 2.2265 1.3982 7.8997 38 1 1.5574 0.0675 5.9467 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342523820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:09 Heat of formation + Delta-G solvation = -57.552852 kcal Electronic energy + Delta-G solvation = -18516.645095 eV Core-core repulsion = 15641.565283 eV Total energy + Delta-G solvation = -2875.079812 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40860 -39.48596 -35.86140 -33.42928 -33.05946 -32.45405 -31.20947 -29.30050 -27.03539 -25.73407 -23.11532 -22.93572 -22.32454 -21.70915 -19.24736 -18.17263 -17.23252 -16.90325 -16.66440 -16.09266 -16.02332 -15.68420 -15.62319 -15.15942 -14.38454 -14.25331 -13.93576 -13.82327 -13.66550 -13.31626 -13.27973 -12.95258 -12.87549 -12.74045 -12.50337 -12.27772 -12.17029 -12.00297 -11.92336 -11.48342 -11.29980 -11.00466 -10.86459 -10.70761 -9.39420 -9.19964 -8.66762 -8.62081 -6.35491 0.39908 1.10868 1.16960 1.38072 1.49194 1.52465 1.80938 2.19657 2.74653 2.91390 3.44888 3.56934 3.73676 3.95715 4.07993 4.13823 4.16325 4.21479 4.33455 4.50851 4.56545 4.57933 4.64327 4.68521 4.82316 4.92412 4.95349 4.98111 5.02966 5.12939 5.20485 5.33223 5.42275 5.67423 5.74363 5.91884 6.07319 6.17117 6.35093 6.66679 6.90696 6.99871 8.29591 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.003353 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.568681 B = 8348.396241 C = 8567.679642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.094 3.906 3 H 0.064 0.936 4 O -0.383 6.383 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.086 4.086 8 H 0.104 0.896 9 S -0.292 6.292 10 C 0.005 3.995 11 C -0.202 4.202 12 C -0.084 4.084 13 C -0.192 4.192 14 C 0.085 3.915 15 C -0.498 4.498 16 H 0.078 0.922 17 C 0.035 3.965 18 N -0.821 5.821 19 Si 0.983 3.017 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.259 1.259 23 C -0.245 4.245 24 C -0.071 4.071 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.289 0.711 37 H 0.098 0.902 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.655 -8.309 -11.129 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.035 3.965 3 H 0.082 0.918 4 O -0.303 6.303 5 C -0.031 4.031 6 C -0.189 4.189 7 C -0.215 4.215 8 H 0.123 0.877 9 S -0.061 6.061 10 C -0.142 4.142 11 C -0.205 4.205 12 C -0.104 4.104 13 C -0.212 4.212 14 C 0.082 3.918 15 C -0.527 4.527 16 H 0.096 0.904 17 C -0.180 4.180 18 N -0.446 5.446 19 Si 0.804 3.196 20 H -0.184 1.184 21 H -0.191 1.191 22 H -0.183 1.183 23 C -0.265 4.265 24 C -0.090 4.090 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.689 -7.114 -11.515 14.324 hybrid contribution 0.699 -0.601 0.961 1.332 sum -3.989 -7.714 -10.553 13.667 Atomic orbital electron populations 1.21804 0.91185 1.03569 1.03341 1.22764 0.96547 0.94637 0.82539 0.91796 1.89112 1.28240 1.74684 1.38235 1.23518 0.83836 1.00945 0.94830 1.23361 0.96898 1.01764 0.96864 1.24648 1.00866 0.99351 0.96647 0.87748 1.87533 1.85289 1.19222 1.14072 1.21917 1.02988 0.96579 0.92691 1.18765 0.94153 1.09953 0.97610 1.20745 0.95482 0.97335 0.96846 1.21263 0.99392 1.03051 0.97456 1.18000 0.91357 0.89737 0.92720 1.19893 1.11981 1.22007 0.98835 0.90432 1.26796 0.96048 0.94515 1.00658 1.69876 1.21249 1.26296 1.27210 0.85235 0.78097 0.78734 0.77562 1.18374 1.19144 1.18329 1.21162 0.95541 1.08795 1.00963 1.20680 0.97936 0.96857 0.93560 0.90434 0.90966 0.91010 0.92025 0.86699 0.90033 0.88656 0.89333 0.89567 0.87645 0.88066 0.89995 0.88357 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.52 71.98 0.69 -2.04 16 2 C 0.09 2.17 3.49 31.10 0.11 2.28 16 3 H 0.06 1.66 7.83 -2.39 -0.02 1.64 16 4 O -0.38 -9.04 11.34 -148.98 -1.69 -10.73 16 5 C 0.05 0.87 7.63 72.48 0.55 1.43 16 6 C -0.15 -2.99 6.63 31.61 0.21 -2.78 16 7 C -0.09 -2.01 3.18 31.61 0.10 -1.91 16 8 H 0.10 2.24 7.87 -2.39 -0.02 2.22 16 9 S -0.29 -9.23 20.79 -56.49 -1.17 -10.41 16 10 C 0.00 0.16 5.93 71.24 0.42 0.58 16 11 C -0.20 -8.37 5.16 -19.67 -0.10 -8.47 16 12 C -0.08 -3.86 9.67 22.22 0.21 -3.65 16 13 C -0.19 -10.13 8.70 22.73 0.20 -9.93 16 14 C 0.08 4.61 5.58 -21.29 -0.12 4.49 16 15 C -0.50 -26.93 9.05 23.46 0.21 -26.72 16 16 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 17 C 0.04 1.79 5.14 85.26 0.44 2.22 16 18 N -0.82 -43.13 10.95 21.83 0.24 -42.89 16 19 Si 0.98 37.94 29.59 68.60 2.03 39.97 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.24 -12.06 9.80 22.73 0.22 -11.84 16 24 C -0.07 -3.05 9.67 22.22 0.21 -2.84 16 25 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.08 1.78 7.38 -2.39 -0.02 1.76 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 2.50 8.08 -2.39 -0.02 2.48 16 33 H 0.09 2.48 7.79 -2.39 -0.02 2.47 16 34 H 0.11 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.10 5.59 6.16 -2.91 -0.02 5.58 16 36 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 37 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.12 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -59.46 327.46 3.80 -55.67 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 1.03 Total: 27.56 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 3.36 Total: -59.18 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.24 Total: -42.89 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.69 Total: -10.73 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.17 Total: -10.41 kcal Total: -59.46 3.80 -55.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342523820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.884 kcal (2) G-P(sol) polarization free energy of solvation -59.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds