Wall clock time and date at job start Tue Mar 31 2020 01:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21311 * 120.00307 * 2 1 4 4 C 1.46755 * 120.00052 * 180.02562 * 2 1 3 5 5 C 1.40132 * 120.09178 * 359.97438 * 4 2 1 6 6 C 1.36525 * 119.90313 * 179.97438 * 5 4 2 7 7 C 1.39340 * 120.09281 * 0.02562 * 6 5 4 8 8 N 1.38886 * 119.90097 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00432 * 5.89814 * 8 7 6 10 10 C 1.52998 * 109.47303 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47351 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99929 * 359.97438 * 11 10 9 13 13 C 1.37875 * 120.00220 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99924 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99865 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47352 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47194 * 119.99763 * 15 13 11 18 18 H 1.48504 * 109.46600 * 239.99197 * 15 13 11 19 19 C 1.39291 * 120.19062 * 0.23346 * 7 6 5 20 20 N 1.48015 * 119.95101 * 179.72396 * 19 7 6 21 21 O 1.21801 * 120.00023 * 217.30387 * 20 19 7 22 22 O 1.21800 * 119.99988 * 37.29963 * 20 19 7 23 23 C 1.36568 * 120.09819 * 359.48522 * 19 7 6 24 24 H 1.09000 * 109.46978 * 270.00102 * 1 2 3 25 25 H 1.09000 * 109.47376 * 30.00088 * 1 2 3 26 26 H 1.08996 * 109.47299 * 149.99827 * 1 2 3 27 27 H 1.08002 * 120.05064 * 359.95665 * 5 4 2 28 28 H 1.08001 * 119.95705 * 180.02562 * 6 5 4 29 29 H 0.97003 * 119.99631 * 185.90052 * 8 7 6 30 30 H 1.08994 * 109.46875 * 60.00140 * 9 8 7 31 31 H 1.09002 * 109.46946 * 300.00192 * 9 8 7 32 32 H 1.09002 * 109.46944 * 299.99786 * 10 9 8 33 33 H 1.09001 * 109.47250 * 59.99682 * 10 9 8 34 34 H 0.96998 * 119.99653 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.04676 * 180.22946 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2407 -1.2709 -0.0006 5 6 1.5420 -2.4856 -0.0006 6 6 2.2286 -3.6657 -0.0016 7 6 3.6220 -3.6634 -0.0022 8 7 4.3163 -4.8662 -0.0027 9 6 3.5897 -6.1315 -0.1331 10 6 4.5826 -7.2952 -0.1043 11 6 3.8351 -8.5968 -0.2391 12 1 2.7594 -8.5943 -0.3351 13 6 4.5244 -9.7909 -0.2387 14 7 5.8343 -9.7940 -0.1212 15 14 3.5978 -11.4042 -0.4064 16 1 2.1432 -11.1298 -0.5233 17 1 4.0661 -12.1201 -1.6203 18 1 3.8479 -12.2454 0.7916 19 6 4.3204 -2.4582 0.0033 20 7 5.8005 -2.4620 0.0089 21 8 6.4092 -1.6259 0.6524 22 8 6.4098 -3.3011 -0.6300 23 6 3.6416 -1.2732 -0.0014 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 0.4620 -2.4883 0.0006 28 1 1.6910 -4.6024 -0.0020 29 1 5.2826 -4.8684 0.0833 30 1 3.0445 -6.1418 -1.0768 31 1 2.8867 -6.2336 0.6937 32 1 5.2858 -7.1933 -0.9309 33 1 5.1274 -7.2847 0.8396 34 1 6.3192 -10.6340 -0.1213 35 1 4.1840 -0.3393 -0.0010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343586033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:20 Heat of formation + Delta-G solvation = -24.323953 kcal Electronic energy + Delta-G solvation = -20681.277145 eV Core-core repulsion = 17261.345032 eV Total energy + Delta-G solvation = -3419.932113 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.15453 -40.27831 -38.86665 -36.63307 -35.97840 -33.44047 -32.56473 -31.19698 -30.26314 -28.60584 -26.19927 -25.17049 -23.24169 -22.83445 -21.02870 -20.48832 -18.64323 -18.58774 -17.79707 -17.30187 -16.49449 -16.29874 -15.84554 -15.26501 -14.94319 -14.71274 -14.68546 -14.32616 -13.84042 -13.27378 -13.21154 -12.80056 -12.43838 -12.39330 -11.92877 -11.52707 -11.42334 -11.36001 -11.02553 -10.95494 -10.86760 -10.76081 -10.08149 -10.02816 -9.86028 -9.81724 -9.47367 -8.59254 -7.85816 -6.22982 -4.28916 0.13325 0.47597 1.22546 1.50391 2.12790 3.16710 3.18403 3.27360 3.29945 3.31966 3.80575 4.20972 4.28121 4.47294 4.71593 4.76366 4.81972 5.06024 5.09543 5.13931 5.36958 5.43967 5.52783 5.71546 5.81473 5.83897 5.87167 6.13826 6.32533 6.44406 6.84998 7.30523 7.34264 7.38005 7.40155 7.72212 7.74040 8.06793 8.76291 9.37151 10.88310 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.003824 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.779901 B = 7321.193751 C = 8497.767321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.405 3.595 3 O -0.470 6.470 4 C -0.252 4.252 5 C 0.017 3.983 6 C -0.209 4.209 7 C 0.313 3.687 8 N -0.692 5.692 9 C 0.109 3.891 10 C 0.011 3.989 11 C -0.529 4.529 12 H 0.061 0.939 13 C 0.061 3.939 14 N -0.888 5.888 15 Si 0.899 3.101 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.145 4.145 20 N 0.038 4.962 21 O -0.158 6.158 22 O -0.173 6.173 23 C 0.051 3.949 24 H 0.098 0.902 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.414 0.586 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 14.796 0.460 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.284 3.716 3 O -0.347 6.347 4 C -0.257 4.257 5 C -0.003 4.003 6 C -0.232 4.232 7 C 0.192 3.808 8 N -0.312 5.312 9 C -0.013 4.013 10 C -0.026 4.026 11 C -0.567 4.567 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.525 5.525 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.234 4.234 20 N 0.555 4.445 21 O -0.376 6.376 22 O -0.383 6.383 23 C 0.031 3.969 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.164 0.836 28 H 0.171 0.829 29 H 0.254 0.746 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.636 14.898 0.418 18.908 hybrid contribution 0.433 -1.118 -0.041 1.200 sum -11.203 13.780 0.377 17.764 Atomic orbital electron populations 1.22218 0.93591 1.04939 1.04831 1.22127 0.91535 0.87087 0.70805 1.90565 1.72069 1.34267 1.37797 1.19976 0.92349 0.95589 1.17793 1.21249 1.00593 0.90491 0.87934 1.20546 0.90266 1.00415 1.11976 1.17931 0.92295 0.84656 0.85966 1.46129 1.11499 1.04022 1.69541 1.22189 0.97054 0.81319 1.00722 1.19338 0.94160 0.90592 0.98555 1.20957 0.93553 0.90227 1.52004 0.92122 1.25016 0.94903 0.99550 0.94728 1.69965 1.06419 1.27092 1.49056 0.86427 0.79910 0.83164 0.77861 1.19607 1.20787 1.20837 1.20061 0.79009 0.95543 1.28813 1.43462 1.03341 0.99548 0.98120 1.94526 1.69278 1.33271 1.40486 1.94532 1.69327 1.32940 1.41478 1.20585 0.93900 0.96238 0.86149 0.88377 0.89392 0.89475 0.83582 0.82923 0.74617 0.91415 0.91686 0.95281 0.95729 0.92605 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 9.75 36.00 0.35 -0.77 16 2 C 0.40 4.04 7.21 -30.87 -0.22 3.82 16 3 O -0.47 -6.42 17.08 5.53 0.09 -6.33 16 4 C -0.25 -2.67 5.87 -105.05 -0.62 -3.29 16 5 C 0.02 0.15 9.31 -39.49 -0.37 -0.22 16 6 C -0.21 -2.30 9.24 -39.79 -0.37 -2.67 16 7 C 0.31 4.46 6.61 -83.86 -0.55 3.90 16 8 N -0.69 -11.34 5.48 -58.63 -0.32 -11.66 16 9 C 0.11 1.91 4.87 -4.04 -0.02 1.89 16 10 C 0.01 0.25 5.09 -27.89 -0.14 0.11 16 11 C -0.53 -13.58 9.11 -34.44 -0.31 -13.89 16 12 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 15 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 C -0.14 -2.14 6.47 -80.16 -0.52 -2.66 16 20 N 0.04 0.65 4.28 33.86 0.15 0.80 16 21 O -0.16 -2.72 18.92 -29.46 -0.56 -3.27 16 22 O -0.17 -3.16 16.72 -29.46 -0.49 -3.65 16 23 C 0.05 0.66 9.15 -39.49 -0.36 0.30 16 24 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.31 6.45 -51.93 -0.34 -0.03 16 27 H 0.15 0.68 6.34 -52.49 -0.33 0.34 16 28 H 0.15 1.49 6.69 -52.49 -0.35 1.14 16 29 H 0.41 7.33 6.02 -40.82 -0.25 7.09 16 30 H 0.07 1.13 8.13 -51.93 -0.42 0.70 16 31 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.15 1.96 7.57 -52.49 -0.40 1.56 16 LS Contribution 312.30 15.07 4.71 4.71 Total: -1.00 -30.54 312.30 -7.66 -38.19 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.72 Total: 2.44 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -3.23 Total: -11.93 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.56 Total: -35.37 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.96 Total: -13.25 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.54 -7.66 -38.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343586033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.870 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds