Wall clock time and date at job start Tue Mar 31 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47492 * 2 1 4 4 C 1.36691 * 120.00027 * 76.36125 * 3 2 1 5 5 H 1.08002 * 120.00157 * 172.90568 * 4 3 2 6 6 C 1.39178 * 119.99755 * 352.90320 * 4 3 2 7 7 N 1.31273 * 120.00007 * 33.43011 * 6 4 3 8 8 Si 1.86806 * 119.99892 * 213.42284 * 6 4 3 9 9 H 1.48495 * 109.47013 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46625 * 120.00257 * 8 6 4 11 11 H 1.48492 * 109.47479 * 240.00295 * 8 6 4 12 12 C 1.34779 * 119.99985 * 256.36492 * 3 2 1 13 13 O 1.21587 * 119.99911 * 182.97742 * 12 3 2 14 14 C 1.47819 * 120.00133 * 2.97890 * 12 3 2 15 15 C 1.39982 * 120.46338 * 218.93032 * 14 12 3 16 16 C 1.38379 * 118.35250 * 179.97438 * 15 14 12 17 17 C 1.39406 * 119.19768 * 359.97438 * 16 15 14 18 18 C 1.48158 * 119.56474 * 179.97438 * 17 16 15 19 19 O 1.21415 * 120.00069 * 0.02562 * 18 17 16 20 20 O 1.34680 * 119.99627 * 179.72569 * 18 17 16 21 21 C 1.45203 * 117.00038 * 180.27328 * 20 18 17 22 22 N 1.32790 * 120.86426 * 0.25793 * 17 16 15 23 23 C 1.31355 * 121.80316 * 359.46832 * 22 17 16 24 24 H 1.08997 * 109.46490 * 287.13744 * 1 2 3 25 25 H 1.09004 * 109.46625 * 47.13477 * 1 2 3 26 26 H 1.08996 * 109.47126 * 167.13181 * 1 2 3 27 27 H 1.09000 * 109.47362 * 239.99894 * 2 1 3 28 28 H 1.09001 * 109.47123 * 120.00030 * 2 1 3 29 29 H 0.97006 * 120.00072 * 179.97438 * 7 6 4 30 30 H 1.07998 * 120.82521 * 359.95929 * 15 14 12 31 31 H 1.08004 * 120.39867 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.46686 * 60.00024 * 21 20 18 33 33 H 1.08996 * 109.47396 * 180.02562 * 21 20 18 34 34 H 1.09003 * 109.47346 * 300.00397 * 21 20 18 35 35 H 1.07996 * 119.64458 * 180.28925 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9831 2.1186 1.1504 5 1 2.4462 3.0938 1.1811 6 6 1.3504 1.6127 2.2821 7 7 1.3698 0.3224 2.5233 8 14 0.4738 2.7697 3.4579 9 1 0.5966 4.1644 2.9633 10 1 -0.9618 2.3983 3.5392 11 1 1.0890 2.6659 4.8053 12 6 2.5025 1.9248 -1.1343 13 8 2.9577 3.0522 -1.1221 14 6 2.4800 1.1504 -2.3933 15 6 3.5534 1.2206 -3.2890 16 6 3.4868 0.4771 -4.4541 17 6 2.3623 -0.3109 -4.6946 18 6 2.2821 -1.1098 -5.9398 19 8 3.1924 -1.0758 -6.7425 20 8 1.2022 -1.8784 -6.1783 21 6 1.1944 -2.6386 -7.4154 22 7 1.3595 -0.3505 -3.8250 23 6 1.3866 0.3361 -2.7055 24 1 -0.3632 0.3028 0.9820 25 1 -0.3633 0.6991 -0.7533 26 1 -0.3633 -1.0018 -0.2289 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9291 -0.0302 3.3123 30 1 4.4122 1.8399 -3.0761 31 1 4.2966 0.5064 -5.1682 32 1 2.0466 -3.3182 -7.4295 33 1 0.2703 -3.2125 -7.4834 34 1 1.2605 -1.9554 -8.2622 35 1 0.5537 0.2745 -2.0208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344427305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:15 Heat of formation + Delta-G solvation = -51.709958 kcal Electronic energy + Delta-G solvation = -21406.787276 eV Core-core repulsion = 17985.667616 eV Total energy + Delta-G solvation = -3421.119659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77225 -39.80694 -38.16867 -36.47526 -35.44753 -32.55409 -32.29630 -31.16989 -29.76475 -28.04998 -26.00618 -24.36072 -23.34519 -22.38252 -21.43183 -19.66657 -18.20959 -17.34544 -17.19098 -16.68601 -16.41818 -15.94669 -15.02972 -14.86322 -14.52687 -14.07900 -13.90105 -13.59978 -13.14508 -13.11260 -12.93745 -12.67506 -12.29313 -12.10951 -11.94939 -11.61784 -11.20823 -11.17029 -10.85814 -10.76947 -10.47705 -10.44139 -10.20245 -9.72551 -9.57226 -9.18528 -8.89071 -8.55505 -8.04639 -6.64926 -3.96535 0.48148 1.41305 2.36371 2.58329 2.98287 3.13671 3.21881 3.60250 3.87510 4.10553 4.24298 4.58128 4.80945 4.91280 4.99173 5.06549 5.09854 5.15241 5.28629 5.36611 5.52457 5.77540 5.89997 6.06513 6.21768 6.24696 6.27321 6.37551 6.49494 6.69411 7.05431 7.09668 7.43053 7.55086 7.82336 8.00215 8.25078 8.89730 9.13571 9.73742 10.24507 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.004325 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.937591 B = 6472.121181 C = 7043.932653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.075 3.925 3 N -0.409 5.409 4 C -0.308 4.308 5 H 0.114 0.886 6 C 0.045 3.955 7 N -0.835 5.835 8 Si 0.915 3.085 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.453 3.547 13 O -0.589 6.589 14 C -0.102 4.102 15 C -0.055 4.055 16 C -0.107 4.107 17 C 0.067 3.933 18 C 0.529 3.471 19 O -0.507 6.507 20 O -0.334 6.334 21 C 0.034 3.966 22 N -0.436 5.436 23 C 0.096 3.904 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.134 0.866 29 H 0.275 0.725 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 -6.272 -9.917 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.048 4.048 3 N -0.123 5.123 4 C -0.436 4.436 5 H 0.132 0.868 6 C -0.163 4.163 7 N -0.471 5.471 8 Si 0.739 3.261 9 H -0.187 1.187 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.243 3.757 13 O -0.476 6.476 14 C -0.108 4.108 15 C -0.081 4.081 16 C -0.127 4.127 17 C -0.069 4.069 18 C 0.373 3.627 19 O -0.395 6.395 20 O -0.249 6.249 21 C -0.060 4.060 22 N -0.147 5.147 23 C -0.066 4.066 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.167 0.833 31 H 0.166 0.834 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.081 0.919 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.223 -6.446 -10.204 12.272 hybrid contribution 0.255 0.692 0.579 0.938 sum -1.968 -5.753 -9.624 11.384 Atomic orbital electron populations 1.22184 0.96914 0.99896 1.02544 1.22392 0.94479 0.83979 1.03944 1.43869 1.49253 1.11407 1.07779 1.19815 1.34246 1.01136 0.88353 0.86843 1.25302 0.96954 0.96059 0.97938 1.69849 1.37674 1.13021 1.26537 0.86067 0.79434 0.81458 0.79103 1.18660 1.20063 1.20548 1.17475 0.87511 0.87712 0.82977 1.90636 1.52436 1.19352 1.85210 1.21653 0.95335 0.96445 0.97373 1.21626 0.98330 0.96452 0.91723 1.21918 0.97892 0.95145 0.97763 1.19916 0.93505 0.99674 0.93846 1.20922 0.79688 0.77010 0.85085 1.90814 1.38510 1.63471 1.46696 1.86705 1.41904 1.54865 1.41460 1.23312 1.03515 0.95162 0.84049 1.67607 1.25866 1.19193 1.02059 1.23868 0.98384 0.91456 0.92857 0.90934 0.93844 0.92983 0.93358 0.84829 0.91389 0.83278 0.83416 0.91889 0.87954 0.91924 0.80138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.54 37.16 0.32 -2.62 16 2 C 0.08 1.56 4.89 -4.04 -0.02 1.54 16 3 N -0.41 -9.75 2.66 -115.90 -0.31 -10.06 16 4 C -0.31 -7.89 9.31 -15.04 -0.14 -8.03 16 5 H 0.11 3.10 7.35 -52.49 -0.39 2.72 16 6 C 0.05 1.06 4.15 -17.44 -0.07 0.99 16 7 N -0.83 -19.29 9.25 55.51 0.51 -18.78 16 8 Si 0.91 18.68 29.66 -169.99 -5.04 13.64 16 9 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 10 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 11 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 12 C 0.45 10.76 7.30 -12.34 -0.09 10.67 16 13 O -0.59 -15.91 16.51 5.29 0.09 -15.82 16 14 C -0.10 -2.00 5.15 -104.72 -0.54 -2.54 16 15 C -0.05 -0.94 9.78 -38.88 -0.38 -1.32 16 16 C -0.11 -1.64 9.62 -39.09 -0.38 -2.02 16 17 C 0.07 1.11 6.75 -82.94 -0.56 0.55 16 18 C 0.53 8.24 7.95 34.80 0.28 8.52 16 19 O -0.51 -8.24 16.10 -19.20 -0.31 -8.55 16 20 O -0.33 -4.71 10.38 -40.44 -0.42 -5.13 16 21 C 0.03 0.32 10.56 101.05 1.07 1.39 16 22 N -0.44 -7.67 10.10 -9.47 -0.10 -7.77 16 23 C 0.10 1.74 8.59 -17.15 -0.15 1.59 16 24 H 0.07 1.48 6.16 -51.93 -0.32 1.16 16 25 H 0.04 0.78 6.52 -51.93 -0.34 0.44 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.92 5.01 -51.93 -0.26 0.66 16 28 H 0.13 3.02 5.58 -51.93 -0.29 2.73 16 29 H 0.27 5.94 8.31 -40.82 -0.34 5.60 16 30 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.15 1.94 7.63 -52.48 -0.40 1.54 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.18 3.19 3.56 -52.49 -0.19 3.01 16 LS Contribution 299.31 15.07 4.51 4.51 Total: -1.00 -28.83 299.31 -5.16 -33.99 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.43 Total: 5.25 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -0.66 Total: 8.72 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: 0.11 Total: -36.61 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.64 Total: -29.50 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.04 Total: 13.64 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.83 -5.16 -33.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344427305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.718 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds