Wall clock time and date at job start Tue Mar 31 2020 01:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47492 * 2 1 4 4 C 1.36691 * 120.00027 * 76.36125 * 3 2 1 5 5 H 1.08002 * 120.00157 * 172.90568 * 4 3 2 6 6 C 1.39178 * 119.99755 * 352.90320 * 4 3 2 7 7 N 1.31273 * 120.00007 * 33.43011 * 6 4 3 8 8 Si 1.86806 * 119.99892 * 213.42284 * 6 4 3 9 9 H 1.48495 * 109.47013 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46625 * 120.00257 * 8 6 4 11 11 H 1.48492 * 109.47479 * 240.00295 * 8 6 4 12 12 C 1.34779 * 119.99985 * 256.36492 * 3 2 1 13 13 O 1.21587 * 119.99911 * 182.97742 * 12 3 2 14 14 C 1.47819 * 120.00133 * 2.97890 * 12 3 2 15 15 C 1.39982 * 120.46338 * 218.93032 * 14 12 3 16 16 C 1.38379 * 118.35250 * 179.97438 * 15 14 12 17 17 C 1.39406 * 119.19768 * 359.97438 * 16 15 14 18 18 C 1.48158 * 119.56474 * 179.97438 * 17 16 15 19 19 O 1.21415 * 120.00069 * 0.02562 * 18 17 16 20 20 O 1.34680 * 119.99627 * 179.72569 * 18 17 16 21 21 C 1.45203 * 117.00038 * 180.27328 * 20 18 17 22 22 N 1.32790 * 120.86426 * 0.25793 * 17 16 15 23 23 C 1.31355 * 121.80316 * 359.46832 * 22 17 16 24 24 H 1.08997 * 109.46490 * 287.13744 * 1 2 3 25 25 H 1.09004 * 109.46625 * 47.13477 * 1 2 3 26 26 H 1.08996 * 109.47126 * 167.13181 * 1 2 3 27 27 H 1.09000 * 109.47362 * 239.99894 * 2 1 3 28 28 H 1.09001 * 109.47123 * 120.00030 * 2 1 3 29 29 H 0.97006 * 120.00072 * 179.97438 * 7 6 4 30 30 H 1.07998 * 120.82521 * 359.95929 * 15 14 12 31 31 H 1.08004 * 120.39867 * 180.02562 * 16 15 14 32 32 H 1.09004 * 109.46686 * 60.00024 * 21 20 18 33 33 H 1.08996 * 109.47396 * 180.02562 * 21 20 18 34 34 H 1.09003 * 109.47346 * 300.00397 * 21 20 18 35 35 H 1.07996 * 119.64458 * 180.28925 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9831 2.1186 1.1504 5 1 2.4462 3.0938 1.1811 6 6 1.3504 1.6127 2.2821 7 7 1.3698 0.3224 2.5233 8 14 0.4738 2.7697 3.4579 9 1 0.5966 4.1644 2.9633 10 1 -0.9618 2.3983 3.5392 11 1 1.0890 2.6659 4.8053 12 6 2.5025 1.9248 -1.1343 13 8 2.9577 3.0522 -1.1221 14 6 2.4800 1.1504 -2.3933 15 6 3.5534 1.2206 -3.2890 16 6 3.4868 0.4771 -4.4541 17 6 2.3623 -0.3109 -4.6946 18 6 2.2821 -1.1098 -5.9398 19 8 3.1924 -1.0758 -6.7425 20 8 1.2022 -1.8784 -6.1783 21 6 1.1944 -2.6386 -7.4154 22 7 1.3595 -0.3505 -3.8250 23 6 1.3866 0.3361 -2.7055 24 1 -0.3632 0.3028 0.9820 25 1 -0.3633 0.6991 -0.7533 26 1 -0.3633 -1.0018 -0.2289 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.9291 -0.0302 3.3123 30 1 4.4122 1.8399 -3.0761 31 1 4.2966 0.5064 -5.1682 32 1 2.0466 -3.3182 -7.4295 33 1 0.2703 -3.2125 -7.4834 34 1 1.2605 -1.9554 -8.2622 35 1 0.5537 0.2745 -2.0208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344427305.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:14 Heat of formation + Delta-G solvation = -69.381910 kcal Electronic energy + Delta-G solvation = -21407.553589 eV Core-core repulsion = 17985.667616 eV Total energy + Delta-G solvation = -3421.885973 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.10581 -41.18151 -39.77963 -37.61295 -37.27047 -34.26542 -33.72726 -32.69493 -31.38356 -29.04152 -27.56257 -25.84860 -24.73400 -24.00806 -22.71686 -21.29828 -19.46041 -19.02368 -18.61077 -18.24869 -17.51437 -17.33924 -16.74503 -16.23736 -16.20604 -15.59488 -15.18519 -15.00951 -14.69682 -14.54021 -14.20885 -14.07548 -13.73215 -13.64813 -13.28092 -12.99264 -12.91837 -12.74508 -12.20466 -12.11977 -11.97261 -11.82422 -11.80115 -11.15079 -11.03373 -10.96844 -10.46607 -10.22473 -9.85244 -8.43462 -5.88550 -0.88446 0.04107 1.05324 1.34455 1.45575 1.48816 1.57704 1.95339 2.22023 2.59925 2.82826 2.99966 3.03472 3.62995 3.67946 3.76628 3.84706 4.06755 4.27635 4.29797 4.36336 4.48769 4.66141 4.70338 4.72733 4.78275 4.93886 5.03889 5.15047 5.29208 5.34285 5.48835 5.64375 5.98285 6.31729 6.43017 6.68318 7.05428 7.33257 7.92125 8.45203 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.004325 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.937591 B = 6472.121181 C = 7043.932653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 N -0.416 5.416 4 C -0.359 4.359 5 H 0.080 0.920 6 C 0.031 3.969 7 N -0.840 5.840 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.261 1.261 11 H -0.271 1.271 12 C 0.445 3.555 13 O -0.635 6.635 14 C -0.123 4.123 15 C -0.047 4.047 16 C -0.093 4.093 17 C 0.070 3.930 18 C 0.533 3.467 19 O -0.514 6.514 20 O -0.344 6.344 21 C 0.025 3.975 22 N -0.440 5.440 23 C 0.103 3.897 24 H 0.054 0.946 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.284 0.716 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.069 0.931 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 -7.988 -11.353 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.044 4.044 3 N -0.130 5.130 4 C -0.486 4.486 5 H 0.098 0.902 6 C -0.177 4.177 7 N -0.475 5.475 8 Si 0.793 3.207 9 H -0.203 1.203 10 H -0.186 1.186 11 H -0.197 1.197 12 C 0.235 3.765 13 O -0.526 6.526 14 C -0.129 4.129 15 C -0.074 4.074 16 C -0.113 4.113 17 C -0.067 4.067 18 C 0.377 3.623 19 O -0.402 6.402 20 O -0.259 6.259 21 C -0.067 4.067 22 N -0.151 5.151 23 C -0.058 4.058 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.082 0.918 28 H 0.134 0.866 29 H 0.095 0.905 30 H 0.175 0.825 31 H 0.195 0.805 32 H 0.088 0.912 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -3.081 -8.223 -11.640 14.581 hybrid contribution 0.547 1.096 0.819 1.474 sum -2.533 -7.127 -10.821 13.203 Atomic orbital electron populations 1.22097 0.95225 1.01771 1.01641 1.22404 0.95822 0.82370 1.03774 1.43973 1.49363 1.12316 1.07352 1.19572 1.37894 1.01028 0.90133 0.90217 1.25808 0.96131 0.97348 0.98423 1.69881 1.36992 1.13573 1.27031 0.85268 0.79001 0.78923 0.77493 1.20319 1.18575 1.19657 1.18070 0.86695 0.87537 0.84155 1.90579 1.54246 1.21486 1.86241 1.21399 0.97318 0.97764 0.96372 1.21794 0.97833 0.96190 0.91577 1.22139 0.98242 0.93652 0.97236 1.20340 0.93261 0.99116 0.93944 1.20674 0.80057 0.77116 0.84500 1.90816 1.38871 1.63776 1.46771 1.86681 1.40983 1.54707 1.43535 1.23702 1.05518 0.95156 0.82359 1.67670 1.26341 1.19228 1.01909 1.23811 0.97877 0.90915 0.93156 0.92745 0.93482 0.89920 0.91785 0.86601 0.90498 0.82473 0.80536 0.91248 0.84907 0.91288 0.79826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 8.54 71.98 0.61 -4.83 16 2 C 0.08 3.27 4.89 86.38 0.42 3.69 16 3 N -0.42 -20.52 2.66 -638.87 -1.70 -22.23 16 4 C -0.36 -19.24 9.31 84.16 0.78 -18.46 16 5 H 0.08 4.70 7.35 -2.91 -0.02 4.68 16 6 C 0.03 1.48 4.15 85.00 0.35 1.83 16 7 N -0.84 -38.81 9.25 21.70 0.20 -38.61 16 8 Si 0.97 38.68 29.66 68.60 2.03 40.71 16 9 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 10 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 11 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 12 C 0.44 21.85 7.30 86.78 0.63 22.48 16 13 O -0.63 -36.00 16.51 -3.99 -0.07 -36.06 16 14 C -0.12 -4.81 5.15 -19.93 -0.10 -4.91 16 15 C -0.05 -1.57 9.78 22.73 0.22 -1.34 16 16 C -0.09 -2.62 9.62 22.58 0.22 -2.41 16 17 C 0.07 2.13 6.75 41.92 0.28 2.42 16 18 C 0.53 15.08 7.95 70.46 0.56 15.64 16 19 O -0.51 -15.13 16.10 20.11 0.32 -14.81 16 20 O -0.34 -8.69 10.38 -55.89 -0.58 -9.27 16 21 C 0.03 0.40 10.56 113.37 1.20 1.60 16 22 N -0.44 -14.58 10.10 -183.88 -1.86 -16.44 16 23 C 0.10 3.63 8.59 85.16 0.73 4.37 16 24 H 0.05 2.17 6.16 -2.39 -0.01 2.16 16 25 H 0.05 1.66 6.52 -2.39 -0.02 1.65 16 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.06 2.42 5.01 -2.39 -0.01 2.40 16 28 H 0.12 5.28 5.58 -2.39 -0.01 5.26 16 29 H 0.28 12.02 8.31 -92.70 -0.77 11.25 16 30 H 0.16 4.92 8.06 -2.91 -0.02 4.89 16 31 H 0.18 4.01 7.63 -2.91 -0.02 3.99 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.19 6.30 3.56 -2.91 -0.01 6.29 16 Total: -1.00 -63.61 299.31 5.41 -58.20 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 1.14 Total: 18.42 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 5.92 Total: 20.08 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.36 Total: -77.27 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -0.32 Total: -60.15 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -63.61 5.41 -58.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344427305.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.185 kcal (2) G-P(sol) polarization free energy of solvation -63.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds