Wall clock time and date at job start Tue Mar 31 2020 00:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.32665 * 2 1 4 4 C 1.54905 * 110.36804 * 237.64439 * 2 1 3 5 5 C 1.55161 * 101.58177 * 204.14835 * 4 2 1 6 6 H 1.08999 * 110.71905 * 276.96343 * 5 4 2 7 7 O 1.42903 * 110.71711 * 153.86602 * 5 4 2 8 8 C 1.54334 * 103.01716 * 35.31060 * 5 4 2 9 9 N 1.47018 * 107.26860 * 338.13831 * 8 5 4 10 10 S 1.65599 * 125.65106 * 178.85595 * 9 8 5 11 11 O 1.42105 * 106.40373 * 156.15050 * 10 9 8 12 12 O 1.42104 * 106.40292 * 23.22846 * 10 9 8 13 13 N 1.65599 * 107.21725 * 269.69035 * 10 9 8 14 14 C 1.46505 * 119.99923 * 270.00257 * 13 10 9 15 15 C 1.46495 * 120.00188 * 89.99516 * 13 10 9 16 16 C 1.50703 * 109.47395 * 265.00258 * 15 13 10 17 17 H 1.07994 * 119.99603 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 H 1.08998 * 109.47128 * 297.76489 * 1 2 3 25 25 H 1.08997 * 109.46853 * 57.76869 * 1 2 3 26 26 H 1.08995 * 109.46660 * 177.76583 * 1 2 3 27 27 H 1.09003 * 111.00323 * 322.22404 * 4 2 1 28 28 H 1.09003 * 111.00529 * 86.07791 * 4 2 1 29 29 H 0.96703 * 113.99569 * 180.02562 * 7 5 4 30 30 H 1.09006 * 109.98633 * 218.66201 * 8 5 4 31 31 H 1.09002 * 109.78070 * 97.49679 * 8 5 4 32 32 H 1.09000 * 109.46741 * 269.99500 * 14 13 10 33 33 H 1.08998 * 109.47043 * 29.99368 * 14 13 10 34 34 H 1.08997 * 109.47364 * 149.99892 * 14 13 10 35 35 H 1.09005 * 109.47411 * 145.00192 * 15 13 10 36 36 H 1.08998 * 109.46900 * 25.00271 * 15 13 10 37 37 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7772 -1.2267 5 6 3.4779 -1.2004 -0.7328 6 1 4.1952 -0.3920 -0.8746 7 8 3.9141 -2.3845 -1.4036 8 6 3.2525 -1.4716 0.7697 9 7 2.0432 -0.7372 1.1691 10 16 1.3725 -0.7330 2.6832 11 8 0.6193 0.4677 2.7851 12 8 2.4159 -1.0749 3.5853 13 7 0.2801 -1.9763 2.7389 14 6 -1.1150 -1.7433 2.3573 15 6 0.7088 -3.3093 3.1696 16 6 1.0514 -4.1418 1.9610 17 1 0.9586 -3.7202 0.9711 18 6 1.4823 -5.4419 2.1191 19 7 1.5948 -5.9554 3.3246 20 14 1.9076 -6.4735 0.6210 21 1 1.6986 -5.6691 -0.6096 22 1 1.0335 -7.6734 0.5819 23 1 3.3284 -6.8985 0.6997 24 1 -0.3633 0.4787 0.9093 25 1 -0.3633 0.5481 -0.8693 26 1 -0.3632 -1.0269 -0.0401 27 1 1.4511 -1.6496 -1.4390 28 1 2.1399 -0.1286 -2.0999 29 1 4.7895 -2.6913 -1.1304 30 1 4.1082 -1.1174 1.3447 31 1 3.1091 -2.5395 0.9343 32 1 -1.6867 -1.4437 3.2357 33 1 -1.1596 -0.9531 1.6079 34 1 -1.5368 -2.6598 1.9446 35 1 -0.0977 -3.7889 3.7243 36 1 1.5866 -3.2195 3.8096 37 1 1.3743 -5.4196 4.1025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349995857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:22 Heat of formation + Delta-G solvation = -120.275742 kcal Electronic energy + Delta-G solvation = -21976.044454 eV Core-core repulsion = 18687.395510 eV Total energy + Delta-G solvation = -3288.648943 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.94761 -36.85756 -35.79276 -35.59177 -35.31192 -32.68458 -31.04926 -29.70140 -27.49067 -25.58527 -24.70249 -22.51975 -21.73276 -20.98039 -18.38202 -17.61450 -17.08413 -17.06107 -16.35356 -15.98019 -15.29309 -14.42834 -14.03212 -13.78444 -13.74248 -13.54332 -13.25085 -12.96306 -12.60215 -12.33109 -12.27132 -12.07953 -11.76629 -11.63688 -11.49045 -11.38084 -11.14638 -11.11514 -10.82591 -10.60257 -10.51441 -10.39789 -10.14923 -9.92768 -9.37872 -8.69439 -8.43788 -7.94661 -6.44172 -4.18547 1.14612 3.35774 3.41897 3.43393 3.59469 3.96968 4.31552 4.47410 4.49466 4.64777 5.05205 5.10967 5.18334 5.29816 5.34304 5.45419 5.49754 5.64906 5.81691 5.87740 5.92668 6.00125 6.07000 6.24181 6.28843 6.36456 6.41201 6.50037 6.70874 7.00311 7.21354 7.46521 7.72940 7.95994 8.40249 8.74378 9.53278 10.93257 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.010076 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.994188 B = 2778.258159 C = 3774.686346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.155 3.845 3 H 0.075 0.925 4 C -0.117 4.117 5 C 0.097 3.903 6 H 0.067 0.933 7 O -0.555 6.555 8 C 0.088 3.912 9 N -1.008 6.008 10 S 2.802 3.198 11 O -0.993 6.993 12 O -0.978 6.978 13 N -0.990 5.990 14 C 0.092 3.908 15 C 0.234 3.766 16 C -0.616 4.616 17 H 0.060 0.940 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 1.070 2.930 21 H -0.285 1.285 22 H -0.288 1.288 23 H -0.286 1.286 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.380 0.620 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.027 0.973 36 H 0.039 0.961 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.556 10.594 -8.772 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.049 3.951 3 H 0.093 0.907 4 C -0.156 4.156 5 C 0.036 3.964 6 H 0.085 0.915 7 O -0.360 6.360 8 C -0.039 4.039 9 N -0.847 5.847 10 S 2.812 3.188 11 O -0.978 6.978 12 O -0.962 6.962 13 N -0.831 5.831 14 C -0.054 4.054 15 C 0.111 3.889 16 C -0.655 4.655 17 H 0.078 0.922 18 C -0.183 4.183 19 N -0.543 5.543 20 Si 0.898 3.102 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.213 1.213 24 H 0.105 0.895 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.227 0.773 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.668 9.753 -8.723 13.102 hybrid contribution -0.123 1.048 0.488 1.163 sum 0.544 10.801 -8.235 13.593 Atomic orbital electron populations 1.22728 0.94767 1.03737 1.04444 1.21444 0.94264 0.94956 0.84447 0.90716 1.22842 0.95126 1.00807 0.96845 1.22777 0.96059 0.87048 0.90501 0.91467 1.86556 1.39452 1.44164 1.65850 1.22474 0.86729 0.99247 0.95411 1.59069 1.38124 1.60433 1.27096 1.01280 0.72744 0.72693 0.72077 1.93512 1.72189 1.45794 1.86284 1.93560 1.56841 1.84678 1.61142 1.57502 1.19002 1.26031 1.80582 1.21548 0.82378 1.02059 0.99441 1.19282 0.95656 0.77694 0.96264 1.22406 1.49692 0.99946 0.93505 0.92213 1.25778 0.94033 0.96073 1.02369 1.70737 1.45079 1.40059 0.98464 0.83529 0.76872 0.75461 0.74291 1.21032 1.21472 1.21265 0.89522 0.90670 0.90777 0.89232 0.90069 0.77269 0.91671 0.88613 0.93856 0.91562 0.90889 0.95513 0.94313 0.91954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.64 7.53 37.16 0.28 -2.36 16 2 C 0.16 2.16 3.68 -66.41 -0.24 1.92 16 3 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 4 C -0.12 -1.51 6.23 -24.58 -0.15 -1.67 16 5 C 0.10 1.28 4.32 -24.89 -0.11 1.17 16 6 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 7 O -0.56 -7.70 13.39 -35.23 -0.47 -8.17 16 8 C 0.09 1.45 6.77 -3.06 -0.02 1.43 16 9 N -1.01 -17.54 3.64 -104.44 -0.38 -17.92 16 10 S 2.80 57.45 5.75 -107.50 -0.62 56.83 16 11 O -0.99 -20.23 14.77 -57.17 -0.84 -21.07 16 12 O -0.98 -23.29 16.27 -57.17 -0.93 -24.23 16 13 N -0.99 -20.94 3.23 -123.05 -0.40 -21.33 16 14 C 0.09 1.62 9.94 59.85 0.60 2.21 16 15 C 0.23 5.84 4.72 -5.19 -0.02 5.82 16 16 C -0.62 -16.29 8.96 -34.44 -0.31 -16.59 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 19 N -0.91 -26.73 13.65 55.43 0.76 -25.97 16 20 Si 1.07 24.62 29.90 -169.99 -5.08 19.53 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.09 1.27 4.70 -51.93 -0.24 1.03 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.04 6.90 -51.93 -0.36 0.68 16 27 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.38 3.69 9.12 45.56 0.42 4.11 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.88 7.62 -51.93 -0.40 1.49 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.02 3.68 -51.93 -0.19 0.83 16 34 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 35 H 0.03 0.69 7.98 -51.93 -0.41 0.27 16 36 H 0.04 1.06 6.78 -51.93 -0.35 0.70 16 37 H 0.27 7.95 7.22 -40.82 -0.29 7.65 16 LS Contribution 306.32 15.07 4.62 4.62 Total: -1.00 -33.43 306.32 -7.85 -41.28 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -4.41 Total: 3.97 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.08 Total: -7.53 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.02 Total: -65.23 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: -2.25 Total: -53.47 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 16 Polarization: 57.45 SS G_CDS: -0.62 Total: 56.83 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.43 -7.85 -41.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.998 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds