Wall clock time and date at job start Tue Mar 31 2020 00:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 110.32665 * 2 1 4 4 C 1.54905 * 110.36804 * 237.64439 * 2 1 3 5 5 C 1.55161 * 101.58177 * 204.14835 * 4 2 1 6 6 H 1.08999 * 110.71905 * 276.96343 * 5 4 2 7 7 O 1.42903 * 110.71711 * 153.86602 * 5 4 2 8 8 C 1.54334 * 103.01716 * 35.31060 * 5 4 2 9 9 N 1.47018 * 107.26860 * 338.13831 * 8 5 4 10 10 S 1.65599 * 125.65106 * 178.85595 * 9 8 5 11 11 O 1.42105 * 106.40373 * 156.15050 * 10 9 8 12 12 O 1.42104 * 106.40292 * 23.22846 * 10 9 8 13 13 N 1.65599 * 107.21725 * 269.69035 * 10 9 8 14 14 C 1.46505 * 119.99923 * 270.00257 * 13 10 9 15 15 C 1.46495 * 120.00188 * 89.99516 * 13 10 9 16 16 C 1.50703 * 109.47395 * 265.00258 * 15 13 10 17 17 H 1.07994 * 119.99603 * 359.97438 * 16 15 13 18 18 C 1.37875 * 119.99838 * 180.02562 * 16 15 13 19 19 N 1.31513 * 120.00380 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47261 * 239.99776 * 20 18 16 23 23 H 1.48500 * 109.47454 * 119.99769 * 20 18 16 24 24 H 1.08998 * 109.47128 * 297.76489 * 1 2 3 25 25 H 1.08997 * 109.46853 * 57.76869 * 1 2 3 26 26 H 1.08995 * 109.46660 * 177.76583 * 1 2 3 27 27 H 1.09003 * 111.00323 * 322.22404 * 4 2 1 28 28 H 1.09003 * 111.00529 * 86.07791 * 4 2 1 29 29 H 0.96703 * 113.99569 * 180.02562 * 7 5 4 30 30 H 1.09006 * 109.98633 * 218.66201 * 8 5 4 31 31 H 1.09002 * 109.78070 * 97.49679 * 8 5 4 32 32 H 1.09000 * 109.46741 * 269.99500 * 14 13 10 33 33 H 1.08998 * 109.47043 * 29.99368 * 14 13 10 34 34 H 1.08997 * 109.47364 * 149.99892 * 14 13 10 35 35 H 1.09005 * 109.47411 * 145.00192 * 15 13 10 36 36 H 1.08998 * 109.46900 * 25.00271 * 15 13 10 37 37 H 0.97001 * 119.99667 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0692 -0.7772 -1.2267 5 6 3.4779 -1.2004 -0.7328 6 1 4.1952 -0.3920 -0.8746 7 8 3.9141 -2.3845 -1.4036 8 6 3.2525 -1.4716 0.7697 9 7 2.0432 -0.7372 1.1691 10 16 1.3725 -0.7330 2.6832 11 8 0.6193 0.4677 2.7851 12 8 2.4159 -1.0749 3.5853 13 7 0.2801 -1.9763 2.7389 14 6 -1.1150 -1.7433 2.3573 15 6 0.7088 -3.3093 3.1696 16 6 1.0514 -4.1418 1.9610 17 1 0.9586 -3.7202 0.9711 18 6 1.4823 -5.4419 2.1191 19 7 1.5948 -5.9554 3.3246 20 14 1.9076 -6.4735 0.6210 21 1 1.6986 -5.6691 -0.6096 22 1 1.0335 -7.6734 0.5819 23 1 3.3284 -6.8985 0.6997 24 1 -0.3633 0.4787 0.9093 25 1 -0.3633 0.5481 -0.8693 26 1 -0.3632 -1.0269 -0.0401 27 1 1.4511 -1.6496 -1.4390 28 1 2.1399 -0.1286 -2.0999 29 1 4.7895 -2.6913 -1.1304 30 1 4.1082 -1.1174 1.3447 31 1 3.1091 -2.5395 0.9343 32 1 -1.6867 -1.4437 3.2357 33 1 -1.1596 -0.9531 1.6079 34 1 -1.5368 -2.6598 1.9446 35 1 -0.0977 -3.7889 3.7243 36 1 1.5866 -3.2195 3.8096 37 1 1.3743 -5.4196 4.1025 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349995857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:21 Heat of formation + Delta-G solvation = -148.014753 kcal Electronic energy + Delta-G solvation = -21977.247307 eV Core-core repulsion = 18687.395510 eV Total energy + Delta-G solvation = -3289.851797 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08635 -38.53037 -37.49841 -37.03221 -36.78075 -34.70997 -32.24917 -30.83925 -29.33212 -26.97341 -26.27658 -24.46108 -22.99140 -22.07226 -19.92689 -19.27738 -18.87825 -18.17943 -17.97699 -17.39813 -16.80256 -15.85881 -15.68540 -15.37672 -15.16428 -14.98415 -14.55963 -14.27108 -14.11643 -14.03977 -13.75528 -13.47530 -13.36187 -13.19314 -13.08740 -12.94750 -12.69998 -12.45438 -12.40235 -12.19088 -11.94568 -11.89936 -11.51412 -11.28938 -10.96981 -10.57747 -10.04780 -9.77277 -8.64347 -6.39676 -0.45785 1.54463 1.61446 1.78937 1.84251 2.42239 2.55629 3.11328 3.16477 3.26499 3.55458 3.76775 3.93371 4.09485 4.14811 4.32919 4.37139 4.54150 4.60183 4.66669 4.68757 4.79406 4.88421 4.89523 4.93563 5.04363 5.07671 5.24457 5.26331 5.32553 5.46741 5.74482 5.84253 6.24519 6.51693 6.88670 7.40208 8.72083 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015140 B = 0.010076 C = 0.007416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.994188 B = 2778.258159 C = 3774.686346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.145 3.855 3 H 0.101 0.899 4 C -0.113 4.113 5 C 0.105 3.895 6 H 0.105 0.895 7 O -0.572 6.572 8 C 0.081 3.919 9 N -1.009 6.009 10 S 2.812 3.188 11 O -0.992 6.992 12 O -1.018 7.018 13 N -0.998 5.998 14 C 0.085 3.915 15 C 0.246 3.754 16 C -0.608 4.608 17 H 0.062 0.938 18 C -0.027 4.027 19 N -0.936 5.936 20 Si 1.116 2.884 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.280 1.280 24 H 0.071 0.929 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.396 0.604 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.015 0.985 36 H 0.010 0.990 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 11.951 -11.555 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.040 3.960 3 H 0.119 0.881 4 C -0.151 4.151 5 C 0.044 3.956 6 H 0.123 0.877 7 O -0.380 6.380 8 C -0.046 4.046 9 N -0.851 5.851 10 S 2.822 3.178 11 O -0.977 6.977 12 O -1.003 7.003 13 N -0.838 5.838 14 C -0.060 4.060 15 C 0.121 3.879 16 C -0.647 4.647 17 H 0.080 0.920 18 C -0.226 4.226 19 N -0.573 5.573 20 Si 0.938 3.062 21 H -0.193 1.193 22 H -0.208 1.208 23 H -0.206 1.206 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.246 0.754 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.033 0.967 36 H 0.028 0.972 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.715 11.138 -11.499 16.025 hybrid contribution -0.157 0.719 1.345 1.533 sum 0.558 11.856 -10.154 15.620 Atomic orbital electron populations 1.22740 0.94373 1.03344 1.05352 1.21868 0.94820 0.95964 0.83319 0.88099 1.22871 0.94228 1.00533 0.97488 1.22873 0.97367 0.87842 0.87485 0.87734 1.86513 1.40957 1.44721 1.65801 1.22613 0.86476 0.96879 0.98604 1.58853 1.38338 1.60763 1.27152 1.00792 0.72142 0.72393 0.72473 1.93507 1.72124 1.45317 1.86717 1.93504 1.58213 1.85193 1.63382 1.57464 1.20840 1.24388 1.81156 1.21788 0.80614 1.02851 1.00793 1.18879 0.94111 0.79479 0.95402 1.22584 1.48379 0.99916 0.93826 0.92023 1.27171 0.93645 0.97867 1.03927 1.70861 1.47309 1.40225 0.98904 0.82945 0.77004 0.74480 0.71775 1.19282 1.20801 1.20597 0.91012 0.87069 0.92032 0.91355 0.86299 0.75406 0.91145 0.92509 0.92547 0.89097 0.91135 0.96737 0.97220 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.73 7.53 71.98 0.54 -4.19 16 2 C 0.14 3.59 3.68 45.47 0.17 3.76 16 3 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 4 C -0.11 -2.49 6.23 31.99 0.20 -2.29 16 5 C 0.10 2.46 4.32 31.79 0.14 2.60 16 6 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 7 O -0.57 -14.41 13.39 -148.98 -2.00 -16.41 16 8 C 0.08 2.60 6.77 86.73 0.59 3.19 16 9 N -1.01 -33.96 3.64 -484.33 -1.76 -35.72 16 10 S 2.81 115.53 5.75 -56.49 -0.32 115.20 16 11 O -0.99 -39.47 14.77 -128.00 -1.89 -41.36 16 12 O -1.02 -49.97 16.27 -128.00 -2.08 -52.06 16 13 N -1.00 -42.76 3.23 -543.22 -1.75 -44.51 16 14 C 0.08 2.93 9.94 127.77 1.27 4.20 16 15 C 0.25 12.72 4.72 85.63 0.40 13.13 16 16 C -0.61 -32.67 8.96 25.60 0.23 -32.44 16 17 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 18 C -0.03 -1.52 5.46 84.65 0.46 -1.05 16 19 N -0.94 -56.51 13.65 21.45 0.29 -56.22 16 20 Si 1.12 49.35 29.90 68.60 2.05 51.40 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H 0.07 1.93 4.70 -2.39 -0.01 1.92 16 25 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.06 1.61 6.90 -2.39 -0.02 1.59 16 27 H 0.07 1.83 8.05 -2.39 -0.02 1.81 16 28 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.40 6.82 9.12 -74.06 -0.68 6.14 16 30 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.06 2.26 7.62 -2.39 -0.02 2.25 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.68 3.68 -2.39 -0.01 2.67 16 34 H 0.07 2.46 8.07 -2.39 -0.02 2.44 16 35 H 0.01 0.78 7.98 -2.38 -0.02 0.76 16 36 H 0.01 0.57 6.78 -2.39 -0.02 0.55 16 37 H 0.26 15.76 7.22 -92.71 -0.67 15.09 16 Total: -1.00 -73.35 306.32 -2.96 -76.31 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.51 Total: 16.48 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.00 Total: -13.10 kcal Atomic # 7 Polarization: -133.23 SS G_CDS: -3.22 Total: -136.46 kcal Atomic # 8 Polarization: -103.86 SS G_CDS: -5.97 Total: -109.83 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Atomic # 16 Polarization: 115.53 SS G_CDS: -0.32 Total: 115.20 kcal Total: -73.35 -2.96 -76.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.709 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds