Wall clock time and date at job start Tue Mar 31 2020 00:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.99460 * 2 1 4 4 C 1.54319 * 109.88709 * 121.10094 * 2 1 3 5 5 C 1.55152 * 102.94442 * 141.61095 * 4 2 1 6 6 H 1.09002 * 111.00686 * 82.57336 * 5 4 2 7 7 O 1.42902 * 111.00596 * 206.42503 * 5 4 2 8 8 C 1.55125 * 101.48524 * 324.33380 * 5 4 2 9 9 N 1.47021 * 109.87948 * 238.91289 * 2 1 3 10 10 S 1.65600 * 125.65525 * 61.60100 * 9 2 1 11 11 O 1.42099 * 106.39807 * 336.45867 * 10 9 2 12 12 O 1.42097 * 106.40481 * 203.53876 * 10 9 2 13 13 N 1.65605 * 107.21849 * 89.99808 * 10 9 2 14 14 C 1.46502 * 119.99873 * 270.00247 * 13 10 9 15 15 C 1.46499 * 119.99782 * 90.00219 * 13 10 9 16 16 C 1.50701 * 109.46992 * 94.99996 * 15 13 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 H 1.09001 * 109.46641 * 181.09331 * 1 2 3 25 25 H 1.08995 * 109.47105 * 301.09051 * 1 2 3 26 26 H 1.08992 * 109.47651 * 61.09389 * 1 2 3 27 27 H 1.09003 * 110.71502 * 259.97719 * 4 2 1 28 28 H 1.08998 * 110.72113 * 23.06878 * 4 2 1 29 29 H 0.96694 * 113.99902 * 180.02562 * 7 5 4 30 30 H 1.09004 * 110.49809 * 278.45511 * 8 5 4 31 31 H 1.09003 * 110.34820 * 156.06190 * 8 5 4 32 32 H 1.08992 * 109.47370 * 269.99952 * 14 13 10 33 33 H 1.09001 * 109.47101 * 30.00374 * 14 13 10 34 34 H 1.09006 * 109.46957 * 149.99784 * 14 13 10 35 35 H 1.09002 * 109.47391 * 334.99987 * 15 13 10 36 36 H 1.09001 * 109.46813 * 215.00043 * 15 13 10 37 37 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0549 -0.7496 1.2426 5 6 3.2877 -1.5142 0.6922 6 1 4.1655 -0.8688 0.6602 7 8 3.5468 -2.6900 1.4619 8 6 2.8100 -1.8823 -0.7370 9 7 2.0299 -0.7139 -1.1840 10 16 1.7563 -0.2813 -2.7590 11 8 0.5685 0.4986 -2.7602 12 8 1.9108 -1.4633 -3.5324 13 7 2.9839 0.7354 -3.2084 14 6 2.8455 2.1810 -3.0153 15 6 4.2082 0.1891 -3.7991 16 6 4.1042 0.2341 -5.3019 17 1 3.2153 0.6303 -5.7701 18 6 5.1444 -0.2297 -6.0791 19 7 6.2270 -0.7118 -5.5089 20 14 5.0157 -0.1733 -7.9417 21 1 3.7067 0.4104 -8.3302 22 1 6.1128 0.6651 -8.4885 23 1 5.1258 -1.5500 -8.4874 24 1 -0.3632 -1.0275 0.0196 25 1 -0.3633 0.5307 0.8800 26 1 -0.3634 0.4967 -0.8995 27 1 2.3530 -0.0460 2.0200 28 1 1.3041 -1.4438 1.6200 29 1 4.3087 -3.2006 1.1556 30 1 2.1802 -2.7717 -0.7117 31 1 3.6655 -2.0410 -1.3936 32 1 2.3974 2.6251 -3.9040 33 1 2.2078 2.3728 -2.1523 34 1 3.8284 2.6206 -2.8456 35 1 4.3389 -0.8433 -3.4747 36 1 5.0635 0.7826 -3.4762 37 1 6.9586 -1.0384 -6.0557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349995858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:24 Heat of formation + Delta-G solvation = -147.554387 kcal Electronic energy + Delta-G solvation = -21296.194209 eV Core-core repulsion = 18006.362375 eV Total energy + Delta-G solvation = -3289.831834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.10920 -38.37376 -37.24784 -36.91584 -36.78844 -34.53925 -32.16830 -30.74674 -29.70629 -26.83739 -26.63011 -24.24671 -22.88172 -22.06283 -19.90210 -19.00892 -18.54512 -18.31797 -18.17387 -17.29805 -16.61326 -16.17962 -15.44729 -15.31609 -14.97767 -14.79582 -14.66208 -14.30185 -14.04858 -13.99167 -13.57846 -13.38231 -13.35215 -13.09043 -12.98400 -12.96393 -12.75362 -12.50931 -12.48014 -12.33394 -12.03942 -11.88852 -11.76642 -11.48586 -11.05083 -10.62823 -10.10206 -9.81680 -8.23885 -6.35563 -0.44777 1.36455 1.38986 1.50606 1.97344 2.37331 2.53383 3.06842 3.16444 3.20518 3.65108 3.76024 3.96961 4.08655 4.13723 4.34851 4.39862 4.58333 4.65521 4.72054 4.78913 4.79117 4.93253 4.99744 5.01729 5.06834 5.14078 5.30543 5.35548 5.44091 5.51112 5.66960 5.91022 6.07268 6.72315 6.83270 7.33460 8.83895 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023975 B = 0.006105 C = 0.005410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.600907 B = 4585.417141 C = 5174.714218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.141 3.859 3 H 0.092 0.908 4 C -0.107 4.107 5 C 0.102 3.898 6 H 0.087 0.913 7 O -0.567 6.567 8 C 0.085 3.915 9 N -1.013 6.013 10 S 2.806 3.194 11 O -0.995 6.995 12 O -1.009 7.009 13 N -1.004 6.004 14 C 0.100 3.900 15 C 0.273 3.727 16 C -0.551 4.551 17 H 0.049 0.951 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.956 3.044 21 H -0.272 1.272 22 H -0.267 1.267 23 H -0.278 1.278 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.112 0.888 28 H 0.087 0.913 29 H 0.398 0.602 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.015 0.985 36 H 0.031 0.969 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.264 2.173 15.626 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.036 3.964 3 H 0.110 0.890 4 C -0.146 4.146 5 C 0.041 3.959 6 H 0.105 0.895 7 O -0.374 6.374 8 C -0.041 4.041 9 N -0.855 5.855 10 S 2.816 3.184 11 O -0.979 6.979 12 O -0.993 6.993 13 N -0.846 5.846 14 C -0.045 4.045 15 C 0.149 3.851 16 C -0.591 4.591 17 H 0.067 0.933 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.192 1.192 23 H -0.204 1.204 24 H 0.073 0.927 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.130 0.870 28 H 0.106 0.894 29 H 0.249 0.751 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.033 0.967 36 H 0.049 0.951 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.343 2.069 15.279 16.672 hybrid contribution 0.931 -0.348 -1.562 1.851 sum -5.412 1.720 13.717 14.846 Atomic orbital electron populations 1.22523 0.94458 1.02858 1.04439 1.21606 0.94760 0.96472 0.83554 0.89028 1.22695 0.96451 0.99267 0.96184 1.22971 0.98360 0.87150 0.87420 0.89471 1.86435 1.55113 1.38930 1.56959 1.22827 0.95092 0.88295 0.97889 1.59008 1.66682 1.37524 1.22328 1.01015 0.72828 0.72421 0.72088 1.93484 1.45630 1.71746 1.87003 1.93554 1.86960 1.49796 1.68990 1.57663 1.34182 1.17470 1.75265 1.21460 1.03099 0.78918 1.01044 1.18636 0.81612 0.92952 0.91877 1.21852 1.02295 1.41633 0.93288 0.93314 1.25724 0.94839 0.94453 1.03593 1.69995 1.06795 1.42172 1.37251 0.85547 0.78407 0.78139 0.79873 1.19637 1.19233 1.20373 0.92676 0.88417 0.91765 0.87012 0.89435 0.75150 0.91051 0.91731 0.93805 0.89799 0.90157 0.96738 0.95142 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.14 9.09 71.98 0.65 -3.49 16 2 C 0.14 3.19 3.67 45.34 0.17 3.35 16 3 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 4 C -0.11 -1.91 6.21 31.78 0.20 -1.71 16 5 C 0.10 2.08 4.44 32.06 0.14 2.22 16 6 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 7 O -0.57 -10.80 13.47 -148.98 -2.01 -12.81 16 8 C 0.09 2.37 6.72 86.93 0.58 2.95 16 9 N -1.01 -31.04 3.45 -483.85 -1.67 -32.71 16 10 S 2.81 114.23 6.22 -56.49 -0.35 113.88 16 11 O -0.99 -40.57 14.35 -128.00 -1.84 -42.40 16 12 O -1.01 -50.78 16.69 -128.00 -2.14 -52.92 16 13 N -1.00 -41.97 3.23 -543.22 -1.75 -43.72 16 14 C 0.10 3.32 10.33 127.77 1.32 4.64 16 15 C 0.27 13.87 5.12 85.63 0.44 14.31 16 16 C -0.55 -31.64 9.38 25.60 0.24 -31.40 16 17 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 18 C 0.01 0.77 5.46 84.66 0.46 1.23 16 19 N -0.92 -53.78 13.29 21.45 0.28 -53.50 16 20 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 21 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H 0.05 1.26 8.13 -2.39 -0.02 1.24 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.81 5.72 -2.39 -0.01 1.79 16 27 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.56 7.84 -2.39 -0.02 1.54 16 29 H 0.40 4.76 9.12 -74.06 -0.68 4.08 16 30 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 34 H 0.08 2.42 7.94 -2.38 -0.02 2.40 16 35 H 0.01 0.80 7.61 -2.39 -0.02 0.78 16 36 H 0.03 1.55 7.96 -2.39 -0.02 1.54 16 37 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -73.59 317.20 -2.85 -76.44 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.39 Total: 8.74 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.21 Total: -7.88 kcal Atomic # 7 Polarization: -126.80 SS G_CDS: -3.14 Total: -129.93 kcal Atomic # 8 Polarization: -102.15 SS G_CDS: -5.98 Total: -108.13 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 114.23 SS G_CDS: -0.35 Total: 113.88 kcal Total: -73.59 -2.85 -76.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.118 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds