Wall clock time and date at job start Tue Mar 31 2020 00:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.87020 * 2 1 4 4 C 1.54317 * 109.88463 * 121.17827 * 2 1 3 5 5 C 1.55159 * 102.94403 * 141.61273 * 4 2 1 6 6 H 1.08996 * 111.00455 * 206.42667 * 5 4 2 7 7 O 1.42904 * 111.00527 * 82.56939 * 5 4 2 8 8 C 1.54914 * 101.57695 * 324.49801 * 5 4 2 9 9 N 1.47023 * 109.88043 * 238.98830 * 2 1 3 10 10 S 1.65600 * 125.64745 * 61.62073 * 9 2 1 11 11 O 1.42104 * 106.39918 * 208.67385 * 10 9 2 12 12 O 1.42100 * 106.40510 * 341.59152 * 10 9 2 13 13 N 1.65599 * 107.22259 * 95.13453 * 10 9 2 14 14 C 1.46497 * 119.99934 * 90.20792 * 13 10 9 15 15 C 1.46501 * 119.99927 * 270.21538 * 13 10 9 16 16 C 1.50707 * 109.47061 * 94.99603 * 15 13 10 17 17 H 1.07999 * 119.99909 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99561 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99947 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99674 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46731 * 90.00078 * 20 18 16 22 22 H 1.48495 * 109.47191 * 209.99988 * 20 18 16 23 23 H 1.48496 * 109.47376 * 330.00421 * 20 18 16 24 24 H 1.08997 * 109.46728 * 174.31989 * 1 2 3 25 25 H 1.09001 * 109.46572 * 294.31073 * 1 2 3 26 26 H 1.08999 * 109.47164 * 54.31185 * 1 2 3 27 27 H 1.08998 * 110.71926 * 259.97254 * 4 2 1 28 28 H 1.08998 * 110.72124 * 23.06872 * 4 2 1 29 29 H 0.96701 * 113.99534 * 186.35129 * 7 5 4 30 30 H 1.09004 * 110.36395 * 278.16857 * 8 5 4 31 31 H 1.08999 * 110.36523 * 155.84736 * 8 5 4 32 32 H 1.09007 * 109.46956 * 89.81797 * 14 13 10 33 33 H 1.08998 * 109.47175 * 209.81459 * 14 13 10 34 34 H 1.09000 * 109.47756 * 329.81380 * 14 13 10 35 35 H 1.08998 * 109.47198 * 214.99646 * 15 13 10 36 36 H 1.09001 * 109.46970 * 335.00028 * 15 13 10 37 37 H 0.97003 * 119.99313 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 6 3.2877 -1.5151 0.6901 6 1 3.4853 -2.4128 1.2760 7 8 4.4385 -0.6689 0.6493 8 6 2.8145 -1.8782 -0.7396 9 7 2.0300 -0.7123 -1.1850 10 16 1.7567 -0.2773 -2.7593 11 8 1.7914 -1.4776 -3.5191 12 8 0.6400 0.6013 -2.7447 13 7 3.0552 0.6251 -3.2511 14 6 4.2121 -0.0306 -3.8659 15 6 3.0472 2.0790 -3.0712 16 6 3.7479 2.4298 -1.7839 17 1 4.1578 1.6479 -1.1618 18 6 3.8656 3.7490 -1.4005 19 7 3.3668 4.7011 -2.1584 20 14 4.7335 4.1838 0.1954 21 1 6.1804 4.3900 -0.0683 22 1 4.1495 5.4301 0.7529 23 1 4.5610 3.0770 1.1702 24 1 -0.3633 -1.0226 -0.1017 25 1 -0.3632 0.4231 0.9366 26 1 -0.3633 0.5995 -0.8347 27 1 2.3530 -0.0488 2.0199 28 1 1.3041 -1.4459 1.6180 29 1 5.2075 -1.0711 0.2227 30 1 2.1887 -2.7704 -0.7169 31 1 3.6716 -2.0316 -1.3953 32 1 4.0684 -0.0839 -4.9451 33 1 5.1131 0.5424 -3.6472 34 1 4.3155 -1.0380 -3.4629 35 1 3.5639 2.5513 -3.9066 36 1 2.0175 2.4346 -3.0330 37 1 3.4494 5.6291 -1.8884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349995859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:27 Heat of formation + Delta-G solvation = -119.444613 kcal Electronic energy + Delta-G solvation = -22008.365829 eV Core-core repulsion = 18719.752926 eV Total energy + Delta-G solvation = -3288.612903 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.94118 -36.66273 -35.43484 -35.35671 -35.15367 -32.41200 -30.85277 -29.67288 -27.74144 -25.51792 -24.99270 -22.24918 -21.59574 -20.75885 -18.26862 -17.41512 -17.21991 -16.68624 -16.28428 -15.39864 -14.91421 -14.50736 -14.22087 -14.01586 -13.66036 -13.24810 -13.19658 -12.59289 -12.33693 -12.25035 -12.10641 -12.04010 -11.66903 -11.54408 -11.41368 -11.12504 -11.06531 -10.97295 -10.84276 -10.70419 -10.49145 -10.28751 -10.02761 -9.90004 -9.65131 -8.57204 -8.42345 -7.98553 -6.03888 -4.09310 1.27210 3.31297 3.38425 3.44462 3.52583 4.14277 4.27808 4.45064 4.60966 4.72332 5.04553 5.15030 5.30444 5.33345 5.54123 5.62429 5.69524 5.73334 5.87369 5.90435 6.03068 6.07255 6.09647 6.23000 6.36518 6.55044 6.71550 6.77258 6.85577 7.37651 7.50187 7.67987 7.81822 7.94835 8.22904 8.98754 9.57072 11.04242 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.009838 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.455497 B = 2845.488876 C = 3532.201575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.153 3.847 3 H 0.095 0.905 4 C -0.117 4.117 5 C 0.093 3.907 6 H 0.070 0.930 7 O -0.545 6.545 8 C 0.096 3.904 9 N -1.005 6.005 10 S 2.800 3.200 11 O -1.001 7.001 12 O -0.971 6.971 13 N -0.995 5.995 14 C 0.108 3.892 15 C 0.244 3.756 16 C -0.535 4.535 17 H 0.071 0.929 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.892 3.108 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.267 1.267 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.375 0.625 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 -12.776 5.161 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.047 3.953 3 H 0.113 0.887 4 C -0.155 4.155 5 C 0.032 3.968 6 H 0.087 0.913 7 O -0.349 6.349 8 C -0.031 4.031 9 N -0.843 5.843 10 S 2.810 3.190 11 O -0.985 6.985 12 O -0.956 6.956 13 N -0.837 5.837 14 C -0.039 4.039 15 C 0.122 3.878 16 C -0.574 4.574 17 H 0.089 0.911 18 C -0.139 4.139 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.192 1.192 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.222 0.778 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.946 -12.350 4.811 13.288 hybrid contribution 1.329 0.092 0.771 1.539 sum 0.383 -12.258 5.582 13.474 Atomic orbital electron populations 1.22480 0.95460 1.02157 1.03805 1.21268 0.93267 0.97462 0.83292 0.88715 1.22743 0.95166 0.99796 0.97844 1.22909 0.87008 0.92671 0.94222 0.91259 1.86650 1.21955 1.44161 1.82181 1.22583 0.95188 0.88834 0.96452 1.59080 1.65928 1.36370 1.22930 1.01316 0.73751 0.72283 0.71661 1.93529 1.87792 1.48125 1.69058 1.93544 1.49670 1.66215 1.86156 1.57682 1.33183 1.19385 1.73478 1.21197 0.90175 0.95885 0.96625 1.19227 0.99075 0.72069 0.97402 1.21650 1.37002 0.92529 1.06221 0.91129 1.24953 0.95534 0.96340 0.97119 1.69950 1.45299 1.00167 1.37815 0.86578 0.79503 0.77983 0.83946 1.20888 1.21437 1.19174 0.93048 0.91764 0.89581 0.89549 0.89783 0.77790 0.91231 0.91157 0.93860 0.90788 0.93292 0.94625 0.93229 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 8.96 37.16 0.33 -2.48 16 2 C 0.15 2.58 3.63 -66.95 -0.24 2.34 16 3 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 4 C -0.12 -1.54 6.21 -24.90 -0.15 -1.69 16 5 C 0.09 1.14 4.43 -24.58 -0.11 1.03 16 6 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 7 O -0.54 -7.90 13.47 -35.23 -0.47 -8.37 16 8 C 0.10 1.30 6.77 -2.53 -0.02 1.28 16 9 N -1.00 -17.47 3.46 -104.42 -0.36 -17.83 16 10 S 2.80 57.61 6.24 -107.50 -0.67 56.94 16 11 O -1.00 -21.10 16.86 -57.17 -0.96 -22.06 16 12 O -0.97 -22.67 13.99 -57.17 -0.80 -23.47 16 13 N -1.00 -21.17 3.23 -123.05 -0.40 -21.56 16 14 C 0.11 1.89 10.31 59.85 0.62 2.51 16 15 C 0.24 6.19 5.41 -5.19 -0.03 6.17 16 16 C -0.53 -14.17 9.38 -34.43 -0.32 -14.50 16 17 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 20 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.09 1.59 6.09 -51.93 -0.32 1.27 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 29 H 0.38 3.88 9.11 45.56 0.42 4.29 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.05 0.74 7.73 -51.93 -0.40 0.34 16 35 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 36 H 0.05 1.38 6.92 -51.93 -0.36 1.02 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 317.03 15.07 4.78 4.78 Total: -1.00 -33.44 317.03 -8.03 -41.47 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.83 Total: 2.79 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.02 Total: -3.71 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -0.02 Total: -64.58 kcal Atomic # 8 Polarization: -51.66 SS G_CDS: -2.24 Total: -53.90 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 57.61 SS G_CDS: -0.67 Total: 56.94 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.44 -8.03 -41.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.973 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds