Wall clock time and date at job start Tue Mar 31 2020 00:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.87020 * 2 1 4 4 C 1.54317 * 109.88463 * 121.17827 * 2 1 3 5 5 C 1.55159 * 102.94403 * 141.61273 * 4 2 1 6 6 H 1.08996 * 111.00455 * 206.42667 * 5 4 2 7 7 O 1.42904 * 111.00527 * 82.56939 * 5 4 2 8 8 C 1.54914 * 101.57695 * 324.49801 * 5 4 2 9 9 N 1.47023 * 109.88043 * 238.98830 * 2 1 3 10 10 S 1.65600 * 125.64745 * 61.62073 * 9 2 1 11 11 O 1.42104 * 106.39918 * 208.67385 * 10 9 2 12 12 O 1.42100 * 106.40510 * 341.59152 * 10 9 2 13 13 N 1.65599 * 107.22259 * 95.13453 * 10 9 2 14 14 C 1.46497 * 119.99934 * 90.20792 * 13 10 9 15 15 C 1.46501 * 119.99927 * 270.21538 * 13 10 9 16 16 C 1.50707 * 109.47061 * 94.99603 * 15 13 10 17 17 H 1.07999 * 119.99909 * 359.97438 * 16 15 13 18 18 C 1.37884 * 119.99561 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99947 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99674 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46731 * 90.00078 * 20 18 16 22 22 H 1.48495 * 109.47191 * 209.99988 * 20 18 16 23 23 H 1.48496 * 109.47376 * 330.00421 * 20 18 16 24 24 H 1.08997 * 109.46728 * 174.31989 * 1 2 3 25 25 H 1.09001 * 109.46572 * 294.31073 * 1 2 3 26 26 H 1.08999 * 109.47164 * 54.31185 * 1 2 3 27 27 H 1.08998 * 110.71926 * 259.97254 * 4 2 1 28 28 H 1.08998 * 110.72124 * 23.06872 * 4 2 1 29 29 H 0.96701 * 113.99534 * 186.35129 * 7 5 4 30 30 H 1.09004 * 110.36395 * 278.16857 * 8 5 4 31 31 H 1.08999 * 110.36523 * 155.84736 * 8 5 4 32 32 H 1.09007 * 109.46956 * 89.81797 * 14 13 10 33 33 H 1.08998 * 109.47175 * 209.81459 * 14 13 10 34 34 H 1.09000 * 109.47756 * 329.81380 * 14 13 10 35 35 H 1.08998 * 109.47198 * 214.99646 * 15 13 10 36 36 H 1.09001 * 109.46970 * 335.00028 * 15 13 10 37 37 H 0.97003 * 119.99313 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 6 3.2877 -1.5151 0.6901 6 1 3.4853 -2.4128 1.2760 7 8 4.4385 -0.6689 0.6493 8 6 2.8145 -1.8782 -0.7396 9 7 2.0300 -0.7123 -1.1850 10 16 1.7567 -0.2773 -2.7593 11 8 1.7914 -1.4776 -3.5191 12 8 0.6400 0.6013 -2.7447 13 7 3.0552 0.6251 -3.2511 14 6 4.2121 -0.0306 -3.8659 15 6 3.0472 2.0790 -3.0712 16 6 3.7479 2.4298 -1.7839 17 1 4.1578 1.6479 -1.1618 18 6 3.8656 3.7490 -1.4005 19 7 3.3668 4.7011 -2.1584 20 14 4.7335 4.1838 0.1954 21 1 6.1804 4.3900 -0.0683 22 1 4.1495 5.4301 0.7529 23 1 4.5610 3.0770 1.1702 24 1 -0.3633 -1.0226 -0.1017 25 1 -0.3632 0.4231 0.9366 26 1 -0.3633 0.5995 -0.8347 27 1 2.3530 -0.0488 2.0199 28 1 1.3041 -1.4459 1.6180 29 1 5.2075 -1.0711 0.2227 30 1 2.1887 -2.7704 -0.7169 31 1 3.6716 -2.0316 -1.3953 32 1 4.0684 -0.0839 -4.9451 33 1 5.1131 0.5424 -3.6472 34 1 4.3155 -1.0380 -3.4629 35 1 3.5639 2.5513 -3.9066 36 1 2.0175 2.4346 -3.0330 37 1 3.4494 5.6291 -1.8884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349995859.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:26 Heat of formation + Delta-G solvation = -147.013308 kcal Electronic energy + Delta-G solvation = -22009.561297 eV Core-core repulsion = 18719.752926 eV Total energy + Delta-G solvation = -3289.808371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05893 -38.35359 -37.20657 -36.91504 -36.42766 -34.46185 -32.07897 -30.78546 -29.65392 -26.84610 -26.55252 -24.18101 -22.80482 -21.89365 -19.80843 -18.83148 -18.63650 -18.26253 -18.15569 -17.09415 -16.41902 -15.95400 -15.52447 -15.30259 -15.16330 -14.85352 -14.60864 -14.13242 -13.97390 -13.59990 -13.49979 -13.40602 -13.22959 -13.06029 -12.97007 -12.89765 -12.77725 -12.48925 -12.41952 -12.16475 -11.98514 -11.86649 -11.69467 -11.47204 -10.88625 -10.56738 -9.92001 -9.71399 -8.15150 -6.27308 -0.32952 1.42298 1.44385 1.57234 1.98451 2.44865 2.57463 3.16264 3.21339 3.49471 3.55267 3.87430 4.02971 4.12177 4.27494 4.47837 4.60161 4.64982 4.67171 4.71831 4.83620 4.86054 4.99280 5.03158 5.05833 5.11847 5.25150 5.42721 5.45784 5.47802 5.59762 5.78601 5.95596 6.12504 6.86719 7.02555 7.42819 8.93250 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.009838 C = 0.007925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.455497 B = 2845.488876 C = 3532.201575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.146 3.854 3 H 0.048 0.952 4 C -0.111 4.111 5 C 0.098 3.902 6 H 0.115 0.885 7 O -0.576 6.576 8 C 0.083 3.917 9 N -1.006 6.006 10 S 2.809 3.191 11 O -1.005 7.005 12 O -1.008 7.008 13 N -1.004 6.004 14 C 0.099 3.901 15 C 0.260 3.740 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.010 3.990 19 N -0.932 5.932 20 Si 0.959 3.041 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.261 1.261 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.048 0.952 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.391 0.609 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.018 0.982 36 H 0.015 0.985 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -15.158 7.167 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.040 3.960 3 H 0.066 0.934 4 C -0.150 4.150 5 C 0.038 3.962 6 H 0.132 0.868 7 O -0.384 6.384 8 C -0.042 4.042 9 N -0.847 5.847 10 S 2.820 3.180 11 O -0.989 6.989 12 O -0.993 6.993 13 N -0.845 5.845 14 C -0.046 4.046 15 C 0.137 3.863 16 C -0.570 4.570 17 H 0.093 0.907 18 C -0.189 4.189 19 N -0.573 5.573 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.186 1.186 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.138 0.862 29 H 0.240 0.760 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.107 -14.771 6.792 16.258 hybrid contribution 0.989 0.763 0.120 1.255 sum 1.096 -14.008 6.912 15.658 Atomic orbital electron populations 1.22441 0.94800 1.02931 1.03472 1.21322 0.93924 0.95833 0.84923 0.93379 1.22800 0.96552 1.00126 0.95539 1.23083 0.85940 0.93590 0.93632 0.86750 1.86603 1.23264 1.45920 1.82567 1.23023 0.95604 0.88029 0.97526 1.58823 1.66513 1.37576 1.21741 1.00812 0.73058 0.71754 0.72389 1.93513 1.87771 1.47748 1.69905 1.93502 1.51450 1.67312 1.86987 1.57624 1.34613 1.17746 1.74549 1.21442 0.88855 0.96947 0.97360 1.18738 0.96548 0.74512 0.96550 1.21846 1.36176 0.92639 1.06320 0.90667 1.25790 0.96365 0.96395 1.00352 1.70079 1.46923 1.00519 1.39744 0.85532 0.78528 0.77574 0.79955 1.19971 1.21485 1.18551 0.90891 0.89508 0.93281 0.90052 0.86230 0.75953 0.88650 0.90228 0.92786 0.90727 0.90470 0.96430 0.96727 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.42 8.96 71.98 0.65 -4.78 16 2 C 0.15 4.80 3.63 45.34 0.16 4.96 16 3 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.11 -2.57 6.21 31.78 0.20 -2.37 16 5 C 0.10 2.01 4.43 31.99 0.14 2.15 16 6 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 7 O -0.58 -15.01 13.47 -148.98 -2.01 -17.02 16 8 C 0.08 1.95 6.77 86.86 0.59 2.54 16 9 N -1.01 -33.65 3.46 -484.28 -1.67 -35.32 16 10 S 2.81 115.94 6.24 -56.49 -0.35 115.58 16 11 O -1.01 -41.25 16.86 -128.00 -2.16 -43.41 16 12 O -1.01 -48.98 13.99 -128.00 -1.79 -50.77 16 13 N -1.00 -43.18 3.23 -543.21 -1.75 -44.93 16 14 C 0.10 3.39 10.31 127.77 1.32 4.71 16 15 C 0.26 13.71 5.41 85.63 0.46 14.17 16 16 C -0.53 -28.62 9.38 25.60 0.24 -28.38 16 17 H 0.08 3.92 7.81 -2.91 -0.02 3.90 16 18 C 0.01 0.54 5.46 84.66 0.46 1.01 16 19 N -0.93 -55.58 13.29 21.45 0.28 -55.30 16 20 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 1.86 6.09 -2.39 -0.01 1.85 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.12 1.91 7.85 -2.39 -0.02 1.89 16 29 H 0.39 6.90 9.11 -74.06 -0.67 6.22 16 30 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 34 H 0.08 2.17 7.73 -2.39 -0.02 2.15 16 35 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 36 H 0.01 0.87 6.92 -2.39 -0.02 0.85 16 37 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -74.24 317.03 -2.81 -77.06 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.39 Total: 14.20 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 4.22 Total: -5.99 kcal Atomic # 7 Polarization: -132.41 SS G_CDS: -3.14 Total: -135.55 kcal Atomic # 8 Polarization: -105.25 SS G_CDS: -5.96 Total: -111.21 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 115.94 SS G_CDS: -0.35 Total: 115.58 kcal Total: -74.24 -2.81 -77.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995859.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.955 kcal (2) G-P(sol) polarization free energy of solvation -74.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds