Wall clock time and date at job start Tue Mar 31 2020 00:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.87904 * 2 1 4 4 C 1.54327 * 109.88128 * 238.98853 * 2 1 3 5 5 C 1.55548 * 102.76143 * 218.26645 * 4 2 1 6 6 H 1.08998 * 110.97048 * 153.60018 * 5 4 2 7 7 O 1.42902 * 111.06169 * 277.42750 * 5 4 2 8 8 C 1.54911 * 101.59823 * 35.53093 * 5 4 2 9 9 N 1.47026 * 109.88390 * 121.02045 * 2 1 3 10 10 S 1.65596 * 125.64844 * 298.54646 * 9 2 1 11 11 O 1.42105 * 106.40124 * 29.34218 * 10 9 2 12 12 O 1.42095 * 106.40197 * 162.26231 * 10 9 2 13 13 N 1.65596 * 107.21735 * 275.80437 * 10 9 2 14 14 C 1.46503 * 120.00462 * 91.58883 * 13 10 9 15 15 C 1.46501 * 119.99861 * 271.58314 * 13 10 9 16 16 C 1.50701 * 109.46848 * 96.70631 * 15 13 10 17 17 H 1.08000 * 120.00261 * 5.00426 * 16 15 13 18 18 C 1.37883 * 120.00023 * 185.01298 * 16 15 13 19 19 N 1.31515 * 119.99696 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00123 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46924 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47355 * 119.99617 * 20 18 16 23 23 H 1.48505 * 109.46830 * 239.99603 * 20 18 16 24 24 H 1.09006 * 109.46763 * 305.82436 * 1 2 3 25 25 H 1.09001 * 109.46738 * 65.82366 * 1 2 3 26 26 H 1.08996 * 109.47257 * 185.82263 * 1 2 3 27 27 H 1.08999 * 110.72192 * 336.59979 * 4 2 1 28 28 H 1.09000 * 110.72146 * 99.87373 * 4 2 1 29 29 H 0.96702 * 114.00478 * 173.70440 * 7 5 4 30 30 H 1.09003 * 110.36695 * 204.11742 * 8 5 4 31 31 H 1.09001 * 110.46023 * 81.84004 * 8 5 4 32 32 H 1.09000 * 109.47174 * 89.99344 * 14 13 10 33 33 H 1.08996 * 109.47568 * 209.99883 * 14 13 10 34 34 H 1.09005 * 109.46981 * 329.99995 * 14 13 10 35 35 H 1.08997 * 109.47541 * 216.70053 * 15 13 10 36 36 H 1.08994 * 109.47236 * 336.70835 * 15 13 10 37 37 H 0.97006 * 119.99927 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2439 5 6 3.2918 -1.5107 -0.6896 6 1 3.4921 -2.4073 -1.2761 7 8 4.4412 -0.6628 -0.6464 8 6 2.8176 -1.8764 0.7392 9 7 2.0300 -0.7125 1.1849 10 16 1.7536 -0.2799 2.7593 11 8 0.4951 0.3798 2.7790 12 8 2.0424 -1.4267 3.5471 13 7 2.8856 0.8602 3.1603 14 6 2.5877 2.2833 2.9804 15 6 4.1850 0.4458 3.6952 16 6 5.1977 0.4061 2.5799 17 1 4.9244 0.7408 1.5901 18 6 6.4732 -0.0576 2.8230 19 7 6.8061 -0.4649 4.0284 20 14 7.7287 -0.1062 1.4407 21 1 7.1090 0.4032 0.1910 22 1 8.8924 0.7440 1.7988 23 1 8.1827 -1.5048 1.2333 24 1 -0.3633 0.6015 0.8333 25 1 -0.3633 0.4209 -0.9376 26 1 -0.3633 -1.0223 0.1043 27 1 1.3061 -1.4455 -1.6188 28 1 2.3504 -0.0431 -2.0212 29 1 5.2104 -1.0644 -0.2195 30 1 3.6743 -2.0287 1.3958 31 1 2.1941 -2.7702 0.7167 32 1 2.1342 2.6774 3.8899 33 1 3.5105 2.8241 2.7708 34 1 1.8965 2.4073 2.1467 35 1 4.5089 1.1572 4.4548 36 1 4.0954 -0.5452 4.1401 37 1 7.7036 -0.7908 4.1996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349995860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:31 Heat of formation + Delta-G solvation = -119.768525 kcal Electronic energy + Delta-G solvation = -22057.251851 eV Core-core repulsion = 18768.624902 eV Total energy + Delta-G solvation = -3288.626949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.86884 -36.66447 -35.43273 -35.23053 -35.12039 -32.46401 -30.86197 -29.62155 -27.74443 -25.49990 -25.02782 -22.25947 -21.54604 -20.78203 -18.26513 -17.26862 -17.20730 -16.67188 -16.35127 -15.43616 -14.70440 -14.53447 -14.24536 -14.04400 -13.54930 -13.36224 -13.12384 -12.61284 -12.39921 -12.18226 -12.15341 -12.04022 -11.67567 -11.60067 -11.34072 -11.17502 -11.09861 -11.00437 -10.81767 -10.76001 -10.53165 -10.32195 -10.07288 -9.84450 -9.58441 -8.58868 -8.48442 -7.98189 -6.09772 -4.15155 1.28757 3.19727 3.31267 3.35423 3.52959 4.16140 4.34866 4.36522 4.72540 4.78149 5.05602 5.20574 5.23903 5.39799 5.51819 5.62354 5.65328 5.73767 5.84187 5.95523 6.02380 6.10756 6.15233 6.26408 6.30709 6.50041 6.56435 6.65239 6.83153 7.35464 7.46832 7.67692 7.89362 8.00321 8.19659 8.94630 9.49906 10.98445 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.009694 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.117426 B = 2887.821969 C = 3802.066271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.155 3.845 3 H 0.072 0.928 4 C -0.115 4.115 5 C 0.092 3.908 6 H 0.069 0.931 7 O -0.549 6.549 8 C 0.095 3.905 9 N -1.004 6.004 10 S 2.800 3.200 11 O -0.995 6.995 12 O -0.978 6.978 13 N -0.995 5.995 14 C 0.108 3.892 15 C 0.242 3.758 16 C -0.533 4.533 17 H 0.073 0.927 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.884 3.116 21 H -0.261 1.261 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.383 0.617 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.098 -0.421 -9.733 12.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.048 3.952 3 H 0.090 0.910 4 C -0.154 4.154 5 C 0.031 3.969 6 H 0.086 0.914 7 O -0.356 6.356 8 C -0.032 4.032 9 N -0.842 5.842 10 S 2.810 3.190 11 O -0.979 6.979 12 O -0.963 6.963 13 N -0.837 5.837 14 C -0.039 4.039 15 C 0.120 3.880 16 C -0.572 4.572 17 H 0.092 0.908 18 C -0.142 4.142 19 N -0.531 5.531 20 Si 0.711 3.289 21 H -0.185 1.185 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.232 0.768 30 H 0.109 0.891 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.043 -0.391 -9.237 12.933 hybrid contribution 1.639 -0.268 -0.572 1.756 sum -7.404 -0.659 -9.809 12.308 Atomic orbital electron populations 1.22506 0.95213 1.02928 1.03208 1.21154 0.93254 0.96061 0.84718 0.90993 1.22791 0.95560 0.99816 0.97190 1.22931 0.86909 0.92643 0.94371 0.91365 1.86483 1.22331 1.44502 1.82249 1.22639 0.95960 0.87821 0.96735 1.59043 1.65635 1.37167 1.22329 1.01313 0.72835 0.73021 0.71822 1.93504 1.41212 1.76511 1.86682 1.93566 1.85666 1.50093 1.66946 1.57680 1.31816 1.16279 1.77929 1.21200 1.00937 0.82180 0.99582 1.19230 0.77256 0.96916 0.94606 1.21735 0.95772 1.42709 0.97014 0.90839 1.24995 0.98319 0.95327 0.95571 1.69960 1.20031 1.42862 1.20245 0.86671 0.81641 0.77716 0.82862 1.18548 1.21127 1.21003 0.89799 0.91989 0.92506 0.89724 0.89746 0.76821 0.89096 0.91610 0.93896 0.90895 0.92972 0.94907 0.93035 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 8.85 37.16 0.33 -2.04 16 2 C 0.15 2.26 3.71 -66.95 -0.25 2.02 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.11 -1.40 6.25 -24.68 -0.15 -1.55 16 5 C 0.09 1.27 4.44 -24.37 -0.11 1.16 16 6 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 7 O -0.55 -9.17 13.33 -35.23 -0.47 -9.64 16 8 C 0.09 1.51 6.67 -2.53 -0.02 1.49 16 9 N -1.00 -17.49 3.46 -104.41 -0.36 -17.85 16 10 S 2.80 57.50 6.29 -107.50 -0.68 56.83 16 11 O -0.99 -20.42 14.40 -57.17 -0.82 -21.24 16 12 O -0.98 -23.24 16.23 -57.17 -0.93 -24.17 16 13 N -1.00 -21.16 3.23 -123.05 -0.40 -21.56 16 14 C 0.11 1.93 10.31 59.85 0.62 2.54 16 15 C 0.24 6.05 5.43 -5.19 -0.03 6.02 16 16 C -0.53 -13.58 9.37 -34.44 -0.32 -13.90 16 17 H 0.07 1.84 7.66 -52.49 -0.40 1.44 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -25.14 13.29 55.43 0.74 -24.41 16 20 Si 0.88 19.62 28.90 -169.99 -4.91 14.71 16 21 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.08 1.28 6.07 -51.93 -0.32 0.96 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.38 6.16 8.46 45.56 0.39 6.55 16 30 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 35 H 0.03 0.86 8.12 -51.93 -0.42 0.43 16 36 H 0.05 1.42 6.91 -51.93 -0.36 1.07 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 315.25 15.07 4.75 4.75 Total: -1.00 -31.54 315.25 -7.97 -39.51 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.86 Total: 5.84 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -0.03 Total: -2.77 kcal Atomic # 7 Polarization: -63.80 SS G_CDS: -0.02 Total: -63.82 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -2.22 Total: -55.05 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.91 Total: 14.71 kcal Atomic # 16 Polarization: 57.50 SS G_CDS: -0.68 Total: 56.83 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.54 -7.97 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.259 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds