Wall clock time and date at job start Tue Mar 31 2020 00:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.87904 * 2 1 4 4 C 1.54327 * 109.88128 * 238.98853 * 2 1 3 5 5 C 1.55548 * 102.76143 * 218.26645 * 4 2 1 6 6 H 1.08998 * 110.97048 * 153.60018 * 5 4 2 7 7 O 1.42902 * 111.06169 * 277.42750 * 5 4 2 8 8 C 1.54911 * 101.59823 * 35.53093 * 5 4 2 9 9 N 1.47026 * 109.88390 * 121.02045 * 2 1 3 10 10 S 1.65596 * 125.64844 * 298.54646 * 9 2 1 11 11 O 1.42105 * 106.40124 * 29.34218 * 10 9 2 12 12 O 1.42095 * 106.40197 * 162.26231 * 10 9 2 13 13 N 1.65596 * 107.21735 * 275.80437 * 10 9 2 14 14 C 1.46503 * 120.00462 * 91.58883 * 13 10 9 15 15 C 1.46501 * 119.99861 * 271.58314 * 13 10 9 16 16 C 1.50701 * 109.46848 * 96.70631 * 15 13 10 17 17 H 1.08000 * 120.00261 * 5.00426 * 16 15 13 18 18 C 1.37883 * 120.00023 * 185.01298 * 16 15 13 19 19 N 1.31515 * 119.99696 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00123 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46924 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47355 * 119.99617 * 20 18 16 23 23 H 1.48505 * 109.46830 * 239.99603 * 20 18 16 24 24 H 1.09006 * 109.46763 * 305.82436 * 1 2 3 25 25 H 1.09001 * 109.46738 * 65.82366 * 1 2 3 26 26 H 1.08996 * 109.47257 * 185.82263 * 1 2 3 27 27 H 1.08999 * 110.72192 * 336.59979 * 4 2 1 28 28 H 1.09000 * 110.72146 * 99.87373 * 4 2 1 29 29 H 0.96702 * 114.00478 * 173.70440 * 7 5 4 30 30 H 1.09003 * 110.36695 * 204.11742 * 8 5 4 31 31 H 1.09001 * 110.46023 * 81.84004 * 8 5 4 32 32 H 1.09000 * 109.47174 * 89.99344 * 14 13 10 33 33 H 1.08996 * 109.47568 * 209.99883 * 14 13 10 34 34 H 1.09005 * 109.46981 * 329.99995 * 14 13 10 35 35 H 1.08997 * 109.47541 * 216.70053 * 15 13 10 36 36 H 1.08994 * 109.47236 * 336.70835 * 15 13 10 37 37 H 0.97006 * 119.99927 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2439 5 6 3.2918 -1.5107 -0.6896 6 1 3.4921 -2.4073 -1.2761 7 8 4.4412 -0.6628 -0.6464 8 6 2.8176 -1.8764 0.7392 9 7 2.0300 -0.7125 1.1849 10 16 1.7536 -0.2799 2.7593 11 8 0.4951 0.3798 2.7790 12 8 2.0424 -1.4267 3.5471 13 7 2.8856 0.8602 3.1603 14 6 2.5877 2.2833 2.9804 15 6 4.1850 0.4458 3.6952 16 6 5.1977 0.4061 2.5799 17 1 4.9244 0.7408 1.5901 18 6 6.4732 -0.0576 2.8230 19 7 6.8061 -0.4649 4.0284 20 14 7.7287 -0.1062 1.4407 21 1 7.1090 0.4032 0.1910 22 1 8.8924 0.7440 1.7988 23 1 8.1827 -1.5048 1.2333 24 1 -0.3633 0.6015 0.8333 25 1 -0.3633 0.4209 -0.9376 26 1 -0.3633 -1.0223 0.1043 27 1 1.3061 -1.4455 -1.6188 28 1 2.3504 -0.0431 -2.0212 29 1 5.2104 -1.0644 -0.2195 30 1 3.6743 -2.0287 1.3958 31 1 2.1941 -2.7702 0.7167 32 1 2.1342 2.6774 3.8899 33 1 3.5105 2.8241 2.7708 34 1 1.8965 2.4073 2.1467 35 1 4.5089 1.1572 4.4548 36 1 4.0954 -0.5452 4.1401 37 1 7.7036 -0.7908 4.1996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349995860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:30 Heat of formation + Delta-G solvation = -145.379298 kcal Electronic energy + Delta-G solvation = -22058.362417 eV Core-core repulsion = 18768.624902 eV Total energy + Delta-G solvation = -3289.737515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.03534 -38.35994 -37.19898 -36.91024 -36.39161 -34.44301 -32.04024 -30.76725 -29.63273 -26.81802 -26.56254 -24.15711 -22.79707 -21.89047 -19.80452 -18.79569 -18.57118 -18.33594 -18.13796 -17.13015 -16.31558 -15.95463 -15.59654 -15.17472 -15.11660 -14.93770 -14.55222 -14.13500 -13.95659 -13.63840 -13.48284 -13.41848 -13.23976 -13.01318 -12.94819 -12.88513 -12.75500 -12.47418 -12.39158 -12.09348 -11.96106 -11.86296 -11.64824 -11.45317 -10.88628 -10.56399 -9.92419 -9.69932 -8.12052 -6.25366 -0.32020 1.44287 1.49461 1.63276 1.98491 2.47080 2.57735 3.17974 3.19569 3.46734 3.57145 3.89046 4.05563 4.12425 4.30721 4.42378 4.59925 4.66802 4.67768 4.77668 4.82718 4.89965 5.00716 5.03093 5.06994 5.11574 5.26603 5.39370 5.43490 5.50697 5.61229 5.80600 5.96539 6.15810 6.82969 6.89995 7.44582 8.96720 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.009694 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.117426 B = 2887.821969 C = 3802.066271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.104 4.104 5 C 0.092 3.908 6 H 0.105 0.895 7 O -0.569 6.569 8 C 0.085 3.915 9 N -1.005 6.005 10 S 2.810 3.190 11 O -0.996 6.996 12 O -1.018 7.018 13 N -1.004 6.004 14 C 0.101 3.899 15 C 0.256 3.744 16 C -0.528 4.528 17 H 0.079 0.921 18 C 0.008 3.992 19 N -0.935 5.935 20 Si 0.956 3.044 21 H -0.242 1.242 22 H -0.293 1.293 23 H -0.277 1.277 24 H 0.059 0.941 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.117 0.883 28 H 0.096 0.904 29 H 0.382 0.618 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.013 0.987 36 H 0.017 0.983 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.679 -0.391 -12.908 15.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.038 3.962 3 H 0.082 0.918 4 C -0.142 4.142 5 C 0.031 3.969 6 H 0.123 0.877 7 O -0.376 6.376 8 C -0.041 4.041 9 N -0.845 5.845 10 S 2.821 3.179 11 O -0.980 6.980 12 O -1.002 7.002 13 N -0.845 5.845 14 C -0.045 4.045 15 C 0.132 3.868 16 C -0.567 4.567 17 H 0.097 0.903 18 C -0.191 4.191 19 N -0.576 5.576 20 Si 0.781 3.219 21 H -0.165 1.165 22 H -0.220 1.220 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.135 0.865 28 H 0.114 0.886 29 H 0.231 0.769 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.035 0.965 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.660 -0.339 -12.421 15.739 hybrid contribution 1.730 -0.264 0.425 1.801 sum -7.930 -0.602 -11.996 14.393 Atomic orbital electron populations 1.22460 0.93960 1.03046 1.03934 1.21472 0.94303 0.95827 0.84638 0.91841 1.22859 0.95223 1.00252 0.95872 1.23203 0.86573 0.94011 0.93077 0.87717 1.86456 1.23111 1.45847 1.82188 1.22869 0.95255 0.88213 0.97723 1.58815 1.65905 1.37868 1.21955 1.00790 0.72572 0.72223 0.72353 1.93502 1.40989 1.76431 1.87126 1.93510 1.86136 1.51692 1.68885 1.57636 1.30360 1.18042 1.78503 1.21406 1.01562 0.80342 1.01150 1.18799 0.79078 0.94572 0.94323 1.21870 0.95830 1.42011 0.97008 0.90262 1.25867 1.00476 0.94815 0.97922 1.70109 1.20573 1.44187 1.22684 0.85534 0.78315 0.77776 0.80256 1.16534 1.22004 1.20260 0.92241 0.88752 0.92002 0.86490 0.88566 0.76926 0.92313 0.89358 0.92651 0.90912 0.90801 0.96922 0.96511 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 8.85 71.98 0.64 -3.47 16 2 C 0.14 3.81 3.71 45.34 0.17 3.98 16 3 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 4 C -0.10 -2.08 6.25 31.92 0.20 -1.88 16 5 C 0.09 2.23 4.44 32.13 0.14 2.37 16 6 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 7 O -0.57 -17.59 13.33 -148.98 -1.99 -19.57 16 8 C 0.09 2.60 6.67 86.86 0.58 3.18 16 9 N -1.00 -33.91 3.46 -484.24 -1.67 -35.58 16 10 S 2.81 116.43 6.29 -56.49 -0.36 116.07 16 11 O -1.00 -40.53 14.40 -128.00 -1.84 -42.38 16 12 O -1.02 -50.02 16.23 -128.00 -2.08 -52.10 16 13 N -1.00 -43.44 3.23 -543.22 -1.75 -45.20 16 14 C 0.10 3.57 10.31 127.77 1.32 4.89 16 15 C 0.26 13.29 5.43 85.63 0.46 13.76 16 16 C -0.53 -27.26 9.37 25.60 0.24 -27.02 16 17 H 0.08 3.94 7.66 -2.91 -0.02 3.92 16 18 C 0.01 0.41 5.46 84.66 0.46 0.87 16 19 N -0.94 -54.13 13.29 21.45 0.28 -53.84 16 20 Si 0.96 40.31 28.90 68.60 1.98 42.29 16 21 H -0.24 -9.38 7.11 99.48 0.71 -8.67 16 22 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 24 H 0.06 1.70 6.07 -2.38 -0.01 1.68 16 25 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.12 1.64 7.85 -2.39 -0.02 1.62 16 28 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.38 11.58 8.46 -74.06 -0.63 10.96 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 34 H 0.07 2.27 7.75 -2.38 -0.02 2.25 16 35 H 0.01 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.02 0.99 6.91 -2.39 -0.02 0.97 16 37 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -69.44 315.25 -2.77 -72.22 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.44 Total: 21.40 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 4.21 Total: -3.32 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -3.14 Total: -134.62 kcal Atomic # 8 Polarization: -108.14 SS G_CDS: -5.91 Total: -114.04 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.98 Total: 42.29 kcal Atomic # 16 Polarization: 116.43 SS G_CDS: -0.36 Total: 116.07 kcal Total: -69.44 -2.77 -72.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349995860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.161 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds