Wall clock time and date at job start Tue Mar 31 2020 00:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.64227 * 2 1 4 4 C 1.54327 * 110.71877 * 236.67298 * 2 1 3 5 5 N 1.47024 * 107.26790 * 219.44361 * 4 2 1 6 6 S 1.65599 * 125.64442 * 178.90424 * 5 4 2 7 7 O 1.42105 * 106.40074 * 203.53738 * 6 5 4 8 8 O 1.42100 * 106.40489 * 336.45977 * 6 5 4 9 9 N 1.65603 * 107.21824 * 90.00110 * 6 5 4 10 10 C 1.46503 * 120.00349 * 89.99792 * 9 6 5 11 11 C 1.46509 * 119.99845 * 269.99891 * 9 6 5 12 12 C 1.50690 * 109.47292 * 94.99615 * 11 9 6 13 13 H 1.08000 * 120.00173 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00421 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00172 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99528 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47130 * 90.00032 * 16 14 12 18 18 H 1.48506 * 109.46950 * 210.00023 * 16 14 12 19 19 H 1.48501 * 109.47004 * 330.00024 * 16 14 12 20 20 C 1.47524 * 108.71771 * 358.93887 * 5 4 2 21 21 C 1.54910 * 104.78261 * 24.11745 * 20 5 4 22 22 H 1.08990 * 111.00561 * 204.89950 * 21 20 5 23 23 O 1.42903 * 110.99677 * 81.09107 * 21 20 5 24 24 H 1.09010 * 109.46829 * 296.85155 * 1 2 3 25 25 H 1.09000 * 109.47366 * 56.84640 * 1 2 3 26 26 H 1.08995 * 109.47203 * 176.85744 * 1 2 3 27 27 H 1.09005 * 109.88171 * 338.85547 * 4 2 1 28 28 H 1.08999 * 109.88663 * 100.02423 * 4 2 1 29 29 H 1.08992 * 109.46844 * 90.00195 * 10 9 6 30 30 H 1.08994 * 109.46851 * 209.99991 * 10 9 6 31 31 H 1.08999 * 109.46459 * 329.99911 * 10 9 6 32 32 H 1.08999 * 109.47045 * 214.99861 * 11 9 6 33 33 H 1.09005 * 109.46696 * 334.99936 * 11 9 6 34 34 H 0.97007 * 119.99613 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.36567 * 265.31052 * 20 5 4 36 36 H 1.09002 * 110.41117 * 142.95688 * 20 5 4 37 37 H 0.96700 * 114.00311 * 64.58311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7931 -1.2061 5 7 3.2445 -1.5519 -0.7366 6 16 4.1622 -2.5779 -1.6571 7 8 4.7855 -3.4795 -0.7525 8 8 3.3343 -3.0027 -2.7310 9 7 5.3774 -1.6773 -2.3313 10 6 6.6516 -1.5209 -1.6253 11 6 5.1783 -1.0369 -3.6338 12 6 4.7253 0.3858 -3.4301 13 1 4.5987 0.7744 -2.4304 14 6 4.4723 1.1916 -4.5199 15 7 4.0774 2.4334 -4.3421 16 14 4.6905 0.5194 -6.2491 17 1 3.4140 -0.0825 -6.7109 18 1 5.0769 1.6233 -7.1642 19 1 5.7542 -0.5169 -6.2467 20 6 3.4637 -1.2487 0.6904 21 6 2.0790 -0.7934 1.2150 22 1 2.1844 -0.1486 2.0874 23 8 1.2482 -1.9180 1.5101 24 1 -0.3633 0.4642 0.9170 25 1 -0.3634 0.5620 -0.8604 26 1 -0.3633 -1.0261 -0.0563 27 1 1.3129 -1.4784 -1.5752 28 1 2.3740 -0.1056 -1.9977 29 1 7.3300 -2.3219 -1.9185 30 1 7.0934 -0.5582 -1.8821 31 1 6.4789 -1.5663 -0.5500 32 1 6.1162 -1.0435 -4.1891 33 1 4.4199 -1.5829 -4.1950 34 1 3.8998 3.0004 -5.1089 35 1 4.1934 -0.4464 0.8000 36 1 3.7963 -2.1404 1.2218 37 1 1.5775 -2.4719 2.2311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350870581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:41 Heat of formation + Delta-G solvation = -118.468839 kcal Electronic energy + Delta-G solvation = -21549.942215 eV Core-core repulsion = 18261.371624 eV Total energy + Delta-G solvation = -3288.570590 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.00899 -36.72276 -35.62958 -35.27748 -35.14506 -32.46819 -32.09170 -28.55193 -28.35399 -25.70124 -25.18519 -22.26354 -21.81787 -20.00069 -18.53765 -17.63889 -17.25769 -16.92915 -16.62844 -15.53609 -15.00873 -14.61261 -14.32000 -13.89490 -13.84854 -13.28502 -13.09062 -12.66981 -12.52487 -12.42157 -12.34327 -11.98486 -11.90392 -11.80314 -11.52083 -11.38243 -11.24709 -10.90363 -10.80038 -10.67603 -10.47985 -10.38104 -10.22624 -10.00135 -9.61333 -8.67478 -8.52588 -8.10990 -6.18936 -4.19192 1.17414 3.25125 3.31609 3.35588 3.44729 4.07563 4.18641 4.33373 4.58342 4.66457 4.97675 5.11917 5.15866 5.43819 5.47249 5.59510 5.60524 5.72823 5.87807 5.96639 5.99002 6.13263 6.14036 6.26879 6.36158 6.42588 6.61698 6.62505 6.73424 6.84185 7.09948 7.38331 7.52284 7.66516 8.38399 8.83992 9.42147 10.93085 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.007979 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.113219 B = 3508.544507 C = 4385.213169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.091 4.091 3 H 0.097 0.903 4 C 0.126 3.874 5 N -1.008 6.008 6 S 2.804 3.196 7 O -0.996 6.996 8 O -0.976 6.976 9 N -0.993 5.993 10 C 0.106 3.894 11 C 0.213 3.787 12 C -0.541 4.541 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.868 3.132 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.090 3.910 21 C 0.096 3.904 22 H 0.073 0.927 23 O -0.553 6.553 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.866 -4.543 10.910 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 H 0.115 0.885 4 C 0.001 3.999 5 N -0.847 5.847 6 S 2.813 3.187 7 O -0.980 6.980 8 O -0.961 6.961 9 N -0.834 5.834 10 C -0.040 4.040 11 C 0.089 3.911 12 C -0.580 4.580 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.530 5.530 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.189 1.189 20 C -0.037 4.037 21 C 0.036 3.964 22 H 0.091 0.909 23 O -0.358 6.358 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.339 -5.119 10.112 11.573 hybrid contribution 0.667 0.168 -0.477 0.837 sum -1.673 -4.950 9.635 10.960 Atomic orbital electron populations 1.21560 0.93638 1.02551 1.01302 1.22302 0.97009 0.98887 0.92892 0.88523 1.21826 0.86527 0.94641 0.96873 1.58884 1.42772 1.63497 1.19521 1.01188 0.72391 0.72921 0.72152 1.93527 1.76903 1.61476 1.66088 1.93557 1.67871 1.80268 1.54356 1.57531 1.25907 1.69182 1.30737 1.21233 0.85564 1.02207 0.95004 1.19612 0.97896 0.93933 0.79666 1.21437 1.46346 0.94699 0.95505 0.90051 1.24846 0.94205 0.94649 0.98969 1.69886 1.45531 1.06559 1.31059 0.86959 0.79593 0.79064 0.84872 1.19666 1.21019 1.18864 1.22676 0.98075 1.00889 0.82046 1.22963 0.88928 0.87617 0.96937 0.90881 1.86523 1.50686 1.40528 1.58036 0.92814 0.92457 0.91693 0.91690 0.89164 0.93660 0.90592 0.92753 0.94599 0.93953 0.92486 0.91006 0.90357 0.77838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.75 37.16 0.33 -1.38 16 2 C -0.09 -1.29 3.48 -88.79 -0.31 -1.60 16 3 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 4 C 0.13 2.25 6.59 -3.06 -0.02 2.23 16 5 N -1.01 -17.90 3.76 -111.34 -0.42 -18.32 16 6 S 2.80 57.06 6.31 -107.50 -0.68 56.38 16 7 O -1.00 -20.48 16.54 -57.17 -0.95 -21.43 16 8 O -0.98 -22.84 16.27 -57.17 -0.93 -23.77 16 9 N -0.99 -20.38 3.23 -123.05 -0.40 -20.78 16 10 C 0.11 1.80 10.31 59.85 0.62 2.42 16 11 C 0.21 4.99 4.48 -5.19 -0.02 4.97 16 12 C -0.54 -14.15 9.48 -34.44 -0.33 -14.47 16 13 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 14 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.89 -25.55 13.96 55.43 0.77 -24.78 16 16 Si 0.87 20.70 27.47 -169.99 -4.67 16.03 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 20 C 0.09 1.24 6.85 -2.47 -0.02 1.22 16 21 C 0.10 1.17 4.16 -24.59 -0.10 1.06 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 23 O -0.55 -6.68 12.22 -35.23 -0.43 -7.11 16 24 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.88 7.44 -51.93 -0.39 0.50 16 27 H 0.06 1.17 7.77 -51.93 -0.40 0.77 16 28 H 0.09 1.85 7.68 -51.93 -0.40 1.45 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.27 8.07 -51.93 -0.42 0.86 16 31 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 32 H 0.04 0.82 7.17 -51.93 -0.37 0.45 16 33 H 0.04 1.04 6.34 -51.93 -0.33 0.71 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.00 7.78 -51.93 -0.40 0.60 16 37 H 0.37 2.93 9.12 45.56 0.42 3.34 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -32.69 314.45 -7.74 -40.43 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.83 Total: 2.14 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 0.05 Total: -3.55 kcal Atomic # 7 Polarization: -63.83 SS G_CDS: -0.04 Total: -63.87 kcal Atomic # 8 Polarization: -49.99 SS G_CDS: -2.31 Total: -52.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Atomic # 16 Polarization: 57.06 SS G_CDS: -0.68 Total: 56.38 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.69 -7.74 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.042 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds