Wall clock time and date at job start Tue Mar 31 2020 00:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.64227 * 2 1 4 4 C 1.54327 * 110.71877 * 236.67298 * 2 1 3 5 5 N 1.47024 * 107.26790 * 219.44361 * 4 2 1 6 6 S 1.65599 * 125.64442 * 178.90424 * 5 4 2 7 7 O 1.42105 * 106.40074 * 203.53738 * 6 5 4 8 8 O 1.42100 * 106.40489 * 336.45977 * 6 5 4 9 9 N 1.65603 * 107.21824 * 90.00110 * 6 5 4 10 10 C 1.46503 * 120.00349 * 89.99792 * 9 6 5 11 11 C 1.46509 * 119.99845 * 269.99891 * 9 6 5 12 12 C 1.50690 * 109.47292 * 94.99615 * 11 9 6 13 13 H 1.08000 * 120.00173 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00421 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00172 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 119.99528 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.47130 * 90.00032 * 16 14 12 18 18 H 1.48506 * 109.46950 * 210.00023 * 16 14 12 19 19 H 1.48501 * 109.47004 * 330.00024 * 16 14 12 20 20 C 1.47524 * 108.71771 * 358.93887 * 5 4 2 21 21 C 1.54910 * 104.78261 * 24.11745 * 20 5 4 22 22 H 1.08990 * 111.00561 * 204.89950 * 21 20 5 23 23 O 1.42903 * 110.99677 * 81.09107 * 21 20 5 24 24 H 1.09010 * 109.46829 * 296.85155 * 1 2 3 25 25 H 1.09000 * 109.47366 * 56.84640 * 1 2 3 26 26 H 1.08995 * 109.47203 * 176.85744 * 1 2 3 27 27 H 1.09005 * 109.88171 * 338.85547 * 4 2 1 28 28 H 1.08999 * 109.88663 * 100.02423 * 4 2 1 29 29 H 1.08992 * 109.46844 * 90.00195 * 10 9 6 30 30 H 1.08994 * 109.46851 * 209.99991 * 10 9 6 31 31 H 1.08999 * 109.46459 * 329.99911 * 10 9 6 32 32 H 1.08999 * 109.47045 * 214.99861 * 11 9 6 33 33 H 1.09005 * 109.46696 * 334.99936 * 11 9 6 34 34 H 0.97007 * 119.99613 * 179.97438 * 15 14 12 35 35 H 1.09002 * 110.36567 * 265.31052 * 20 5 4 36 36 H 1.09002 * 110.41117 * 142.95688 * 20 5 4 37 37 H 0.96700 * 114.00311 * 64.58311 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7931 -1.2061 5 7 3.2445 -1.5519 -0.7366 6 16 4.1622 -2.5779 -1.6571 7 8 4.7855 -3.4795 -0.7525 8 8 3.3343 -3.0027 -2.7310 9 7 5.3774 -1.6773 -2.3313 10 6 6.6516 -1.5209 -1.6253 11 6 5.1783 -1.0369 -3.6338 12 6 4.7253 0.3858 -3.4301 13 1 4.5987 0.7744 -2.4304 14 6 4.4723 1.1916 -4.5199 15 7 4.0774 2.4334 -4.3421 16 14 4.6905 0.5194 -6.2491 17 1 3.4140 -0.0825 -6.7109 18 1 5.0769 1.6233 -7.1642 19 1 5.7542 -0.5169 -6.2467 20 6 3.4637 -1.2487 0.6904 21 6 2.0790 -0.7934 1.2150 22 1 2.1844 -0.1486 2.0874 23 8 1.2482 -1.9180 1.5101 24 1 -0.3633 0.4642 0.9170 25 1 -0.3634 0.5620 -0.8604 26 1 -0.3633 -1.0261 -0.0563 27 1 1.3129 -1.4784 -1.5752 28 1 2.3740 -0.1056 -1.9977 29 1 7.3300 -2.3219 -1.9185 30 1 7.0934 -0.5582 -1.8821 31 1 6.4789 -1.5663 -0.5500 32 1 6.1162 -1.0435 -4.1891 33 1 4.4199 -1.5829 -4.1950 34 1 3.8998 3.0004 -5.1089 35 1 4.1934 -0.4464 0.8000 36 1 3.7963 -2.1404 1.2218 37 1 1.5775 -2.4719 2.2311 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350870581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:41 Heat of formation + Delta-G solvation = -145.575549 kcal Electronic energy + Delta-G solvation = -21551.117650 eV Core-core repulsion = 18261.371624 eV Total energy + Delta-G solvation = -3289.746025 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13479 -38.40294 -37.32053 -36.97292 -36.20725 -34.49441 -33.26575 -30.28643 -29.61443 -26.92984 -26.79691 -23.86760 -23.27033 -21.13703 -20.04337 -19.26165 -18.72744 -18.57197 -18.14154 -17.16695 -16.33781 -16.18009 -15.60578 -15.52310 -15.06041 -14.66735 -14.55321 -14.42232 -14.16802 -13.72439 -13.51687 -13.48543 -13.36897 -13.27388 -13.18537 -13.03657 -12.96345 -12.43690 -12.33880 -12.09952 -12.01604 -11.84246 -11.65863 -11.43203 -10.96914 -10.76902 -9.95640 -9.74674 -8.28757 -6.32008 -0.41111 1.35444 1.39523 1.45937 1.90942 2.34062 2.50990 3.05427 3.11108 3.40733 3.50713 3.76479 3.99298 4.04539 4.30517 4.49743 4.60050 4.61967 4.63497 4.71118 4.77300 4.84067 4.89960 4.93595 4.97710 5.13733 5.16657 5.23002 5.31443 5.41460 5.47571 5.52377 5.79164 6.31014 6.71753 6.97642 7.31669 8.85691 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.007979 C = 0.006384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.113219 B = 3508.544507 C = 4385.213169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 H 0.099 0.901 4 C 0.126 3.874 5 N -1.011 6.011 6 S 2.812 3.188 7 O -0.997 6.997 8 O -1.013 7.013 9 N -0.999 5.999 10 C 0.097 3.903 11 C 0.219 3.781 12 C -0.533 4.533 13 H 0.057 0.943 14 C 0.026 3.974 15 N -0.932 5.932 16 Si 0.919 3.081 17 H -0.274 1.274 18 H -0.278 1.278 19 H -0.246 1.246 20 C 0.078 3.922 21 C 0.110 3.890 22 H 0.113 0.887 23 O -0.568 6.568 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 -5.060 12.272 13.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.117 0.883 4 C 0.000 4.000 5 N -0.851 5.851 6 S 2.822 3.178 7 O -0.981 6.981 8 O -0.997 6.997 9 N -0.840 5.840 10 C -0.048 4.048 11 C 0.094 3.906 12 C -0.572 4.572 13 H 0.075 0.925 14 C -0.174 4.174 15 N -0.571 5.571 16 Si 0.743 3.257 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.169 1.169 20 C -0.047 4.047 21 C 0.049 3.951 22 H 0.130 0.870 23 O -0.376 6.376 24 H 0.095 0.905 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -1.794 -5.668 11.508 12.953 hybrid contribution 0.496 0.320 -0.789 0.985 sum -1.297 -5.348 10.719 12.049 Atomic orbital electron populations 1.21514 0.92599 1.02090 1.02273 1.22324 0.97814 0.98724 0.92302 0.88285 1.21774 0.86291 0.94033 0.97869 1.58718 1.42215 1.62981 1.21230 1.00744 0.72133 0.73106 0.71771 1.93515 1.77002 1.61844 1.65763 1.93503 1.68812 1.81322 1.56096 1.57504 1.27515 1.68778 1.30193 1.21497 0.84351 1.02963 0.95979 1.19377 0.97807 0.92190 0.81241 1.21571 1.45308 0.95883 0.94405 0.92456 1.25561 0.94287 0.94882 1.02644 1.69995 1.47199 1.07823 1.32106 0.86140 0.79857 0.79045 0.80664 1.19988 1.20355 1.16934 1.23071 0.99868 1.02070 0.79713 1.22926 0.87157 0.87891 0.97119 0.86971 1.86483 1.50909 1.40960 1.59269 0.90535 0.92959 0.92653 0.92833 0.92964 0.91714 0.90677 0.90693 0.93490 0.95172 0.92413 0.89875 0.88944 0.75525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.75 71.98 0.63 -2.47 16 2 C -0.09 -2.49 3.48 -9.61 -0.03 -2.53 16 3 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 4 C 0.13 4.57 6.59 86.73 0.57 5.14 16 5 N -1.01 -35.44 3.76 -506.17 -1.90 -37.34 16 6 S 2.81 113.32 6.31 -56.49 -0.36 112.97 16 7 O -1.00 -39.50 16.54 -128.00 -2.12 -41.61 16 8 O -1.01 -48.06 16.27 -128.00 -2.08 -50.15 16 9 N -1.00 -40.30 3.23 -543.23 -1.75 -42.06 16 10 C 0.10 3.12 10.31 127.77 1.32 4.43 16 11 C 0.22 10.20 4.48 85.63 0.38 10.59 16 12 C -0.53 -28.20 9.48 25.60 0.24 -27.96 16 13 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 14 C 0.03 1.42 5.47 84.66 0.46 1.89 16 15 N -0.93 -54.29 13.96 21.45 0.30 -53.99 16 16 Si 0.92 42.40 27.47 68.60 1.88 44.29 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 20 C 0.08 1.98 6.85 86.84 0.59 2.58 16 21 C 0.11 2.34 4.16 31.98 0.13 2.48 16 22 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 23 O -0.57 -12.13 12.22 -148.98 -1.82 -13.95 16 24 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.46 7.44 -2.39 -0.02 1.44 16 27 H 0.05 2.01 7.77 -2.38 -0.02 2.00 16 28 H 0.05 2.26 7.68 -2.39 -0.02 2.24 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.07 2.07 7.79 -2.39 -0.02 2.05 16 32 H 0.05 2.09 7.17 -2.39 -0.02 2.07 16 33 H 0.03 1.49 6.34 -2.38 -0.02 1.48 16 34 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 35 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 2.10 7.78 -2.39 -0.02 2.08 16 37 H 0.39 4.86 9.12 -74.06 -0.68 4.18 16 Total: -1.00 -70.38 314.45 -3.21 -73.59 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.34 Total: 14.11 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 4.30 Total: -5.86 kcal Atomic # 7 Polarization: -130.03 SS G_CDS: -3.35 Total: -133.39 kcal Atomic # 8 Polarization: -99.69 SS G_CDS: -6.02 Total: -105.71 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 1.88 Total: 44.29 kcal Atomic # 16 Polarization: 113.32 SS G_CDS: -0.36 Total: 112.97 kcal Total: -70.38 -3.21 -73.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.982 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds