Wall clock time and date at job start Tue Mar 31 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.78212 * 2 1 4 4 C 1.54370 * 110.75904 * 123.25262 * 2 1 3 5 5 N 1.47024 * 107.28856 * 140.50832 * 4 2 1 6 6 S 1.65600 * 125.64611 * 181.05771 * 5 4 2 7 7 O 1.42098 * 106.40297 * 23.55076 * 6 5 4 8 8 O 1.42103 * 106.40136 * 156.47341 * 6 5 4 9 9 N 1.65600 * 107.21816 * 270.01295 * 6 5 4 10 10 C 1.46498 * 119.99953 * 89.99777 * 9 6 5 11 11 C 1.46500 * 120.00009 * 270.00486 * 9 6 5 12 12 C 1.50699 * 109.47578 * 94.99486 * 11 9 6 13 13 H 1.08000 * 119.99850 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00030 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99710 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47131 * 60.00701 * 16 14 12 18 18 H 1.48502 * 109.47034 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47398 * 300.00353 * 16 14 12 20 20 C 1.47424 * 108.70378 * 1.08925 * 5 4 2 21 21 C 1.54909 * 104.83184 * 335.87116 * 20 5 4 22 22 H 1.08994 * 111.00706 * 278.89343 * 21 20 5 23 23 O 1.42905 * 111.00086 * 155.08239 * 21 20 5 24 24 H 1.09001 * 109.46349 * 183.23379 * 1 2 3 25 25 H 1.08998 * 109.46807 * 303.22867 * 1 2 3 26 26 H 1.08994 * 109.47279 * 63.23368 * 1 2 3 27 27 H 1.08998 * 109.84556 * 21.09625 * 4 2 1 28 28 H 1.09004 * 110.02878 * 260.01450 * 4 2 1 29 29 H 1.09005 * 109.47066 * 90.00020 * 10 9 6 30 30 H 1.08997 * 109.47195 * 210.00142 * 10 9 6 31 31 H 1.08995 * 109.47282 * 330.00404 * 10 9 6 32 32 H 1.08995 * 109.47011 * 215.00237 * 11 9 6 33 33 H 1.09004 * 109.46640 * 334.99486 * 11 9 6 34 34 H 0.96996 * 120.00194 * 179.97438 * 15 14 12 35 35 H 1.09007 * 110.36412 * 217.03893 * 20 5 4 36 36 H 1.08992 * 110.36743 * 94.71512 * 20 5 4 37 37 H 0.96696 * 114.00036 * 64.58481 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0772 -0.7915 1.2071 5 7 3.2451 -1.5516 0.7382 6 16 4.1637 -2.5756 1.6600 7 8 3.3368 -2.9979 2.7357 8 8 4.7860 -3.4792 0.7569 9 7 5.3795 -1.6736 2.3311 10 6 5.1817 -1.0302 3.6323 11 6 6.6529 -1.5187 1.6234 12 6 6.6324 -0.2401 0.8261 13 1 5.7584 0.3941 0.8450 14 6 7.7298 0.1207 0.0734 15 7 8.7944 -0.6513 0.0509 16 14 7.7040 1.7053 -0.9154 17 1 7.5028 2.8570 0.0003 18 1 8.9949 1.8622 -1.6326 19 1 6.5939 1.6561 -1.9004 20 6 3.4633 -1.2505 -0.6884 21 6 2.0790 -0.7954 -1.2139 22 1 1.4449 -1.6531 -1.4382 23 8 2.2179 0.0486 -2.3587 24 1 -0.3632 -1.0261 0.0580 25 1 -0.3633 0.5631 0.8596 26 1 -0.3633 0.4628 -0.9175 27 1 1.3139 -1.4757 1.5777 28 1 2.3756 -0.1050 1.9995 29 1 5.4956 -1.7095 4.4249 30 1 5.7750 -0.1172 3.6801 31 1 4.1273 -0.7855 3.7601 32 1 7.4681 -1.4833 2.3460 33 1 6.7999 -2.3639 0.9510 34 1 9.5663 -0.3977 -0.4789 35 1 3.7952 -2.1435 -1.2181 36 1 4.1935 -0.4491 -0.7996 37 1 2.6033 -0.3925 -3.1281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350870583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:46 Heat of formation + Delta-G solvation = -124.534770 kcal Electronic energy + Delta-G solvation = -21445.745782 eV Core-core repulsion = 18156.912153 eV Total energy + Delta-G solvation = -3288.833629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.99010 -36.69365 -35.52822 -35.48470 -35.25061 -32.50900 -32.25711 -28.30276 -27.78476 -25.91996 -25.08319 -22.40048 -22.05217 -20.32077 -18.49828 -17.56820 -17.26949 -16.72514 -16.34482 -15.74492 -15.10414 -14.57750 -14.36858 -13.73760 -13.64533 -13.43949 -13.31093 -13.02815 -12.43275 -12.37160 -12.18354 -12.12128 -11.87001 -11.72788 -11.53012 -11.37293 -11.18231 -11.13726 -10.90433 -10.77386 -10.52763 -10.34747 -10.10378 -10.00358 -9.79481 -8.67584 -8.50724 -8.06303 -6.12900 -4.19963 1.18777 3.25541 3.30998 3.32233 3.42552 4.02079 4.27927 4.34937 4.42954 4.67363 4.96790 5.09605 5.20935 5.30848 5.38742 5.50131 5.51818 5.62303 5.75073 5.81611 5.95559 6.05241 6.06486 6.20270 6.24769 6.33645 6.41400 6.51194 6.69962 7.31169 7.41064 7.61026 7.66073 7.83797 8.13047 8.84892 9.46242 10.95013 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.008956 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.122247 B = 3125.498776 C = 4338.390920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.094 0.906 4 C 0.129 3.871 5 N -1.013 6.013 6 S 2.801 3.199 7 O -0.995 6.995 8 O -0.974 6.974 9 N -0.996 5.996 10 C 0.107 3.893 11 C 0.244 3.756 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.890 5.890 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.273 1.273 20 C 0.090 3.910 21 C 0.096 3.904 22 H 0.070 0.930 23 O -0.558 6.558 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 1.165 -0.158 13.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.112 0.888 4 C 0.003 3.997 5 N -0.852 5.852 6 S 2.811 3.189 7 O -0.979 6.979 8 O -0.958 6.958 9 N -0.838 5.838 10 C -0.040 4.040 11 C 0.122 3.878 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.036 4.036 21 C 0.035 3.965 22 H 0.088 0.912 23 O -0.362 6.362 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -13.481 0.586 0.358 13.499 hybrid contribution 0.591 1.001 -0.942 1.496 sum -12.890 1.586 -0.584 13.000 Atomic orbital electron populations 1.21758 0.93797 1.02014 1.02227 1.22186 0.96059 1.00411 0.92660 0.88811 1.21704 0.87453 0.94295 0.96274 1.58979 1.42281 1.63231 1.20699 1.01316 0.72030 0.73278 0.72322 1.93533 1.68936 1.80687 1.54791 1.93569 1.76005 1.60850 1.65387 1.57694 1.29288 1.68432 1.28371 1.21221 1.00345 0.98361 0.84079 1.19225 0.78816 0.97776 0.92001 1.21511 1.01254 1.06893 1.28309 0.91973 1.24958 0.95292 0.97074 0.96537 1.69925 1.04799 1.37434 1.40639 0.86632 0.77430 0.83518 0.80299 1.20252 1.21222 1.19881 1.22693 0.97920 1.02374 0.80609 1.23054 0.95174 0.92332 0.85916 0.91175 1.86482 1.85799 1.40862 1.23094 0.92449 0.92188 0.91942 0.91236 0.91621 0.93682 0.90799 0.92993 0.94394 0.93146 0.92506 0.90103 0.89319 0.77154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.16 37.16 0.34 -1.04 16 2 C -0.09 -1.17 3.29 -88.76 -0.29 -1.46 16 3 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.13 1.80 6.59 -3.04 -0.02 1.78 16 5 N -1.01 -17.44 3.76 -111.39 -0.42 -17.86 16 6 S 2.80 56.86 6.31 -107.50 -0.68 56.18 16 7 O -1.00 -20.58 16.79 -57.17 -0.96 -21.54 16 8 O -0.97 -22.75 16.01 -57.17 -0.92 -23.66 16 9 N -1.00 -20.95 3.23 -123.06 -0.40 -21.35 16 10 C 0.11 1.86 10.31 59.85 0.62 2.48 16 11 C 0.24 6.10 5.41 -5.19 -0.03 6.07 16 12 C -0.54 -14.11 9.38 -34.44 -0.32 -14.43 16 13 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -25.36 13.29 55.43 0.74 -24.63 16 16 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C 0.09 1.48 6.84 -2.53 -0.02 1.46 16 21 C 0.10 1.26 3.88 -24.58 -0.10 1.16 16 22 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 23 O -0.56 -7.15 13.47 -35.23 -0.47 -7.62 16 24 H 0.06 0.53 8.06 -51.93 -0.42 0.11 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.27 8.07 -51.93 -0.42 0.86 16 31 H 0.05 0.79 7.79 -51.93 -0.40 0.39 16 32 H 0.04 0.99 8.11 -51.93 -0.42 0.57 16 33 H 0.05 1.38 6.91 -51.93 -0.36 1.03 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 35 H 0.08 1.33 7.78 -51.93 -0.40 0.92 16 36 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.38 3.41 9.12 45.56 0.42 3.83 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -32.50 320.66 -8.13 -40.63 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.91 Total: 1.71 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -0.08 Total: -63.83 kcal Atomic # 8 Polarization: -50.47 SS G_CDS: -2.35 Total: -52.82 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.68 Total: 56.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.50 -8.13 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.910 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds