Wall clock time and date at job start Tue Mar 31 2020 00:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.78212 * 2 1 4 4 C 1.54370 * 110.75904 * 123.25262 * 2 1 3 5 5 N 1.47024 * 107.28856 * 140.50832 * 4 2 1 6 6 S 1.65600 * 125.64611 * 181.05771 * 5 4 2 7 7 O 1.42098 * 106.40297 * 23.55076 * 6 5 4 8 8 O 1.42103 * 106.40136 * 156.47341 * 6 5 4 9 9 N 1.65600 * 107.21816 * 270.01295 * 6 5 4 10 10 C 1.46498 * 119.99953 * 89.99777 * 9 6 5 11 11 C 1.46500 * 120.00009 * 270.00486 * 9 6 5 12 12 C 1.50699 * 109.47578 * 94.99486 * 11 9 6 13 13 H 1.08000 * 119.99850 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00030 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00242 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99710 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47131 * 60.00701 * 16 14 12 18 18 H 1.48502 * 109.47034 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.47398 * 300.00353 * 16 14 12 20 20 C 1.47424 * 108.70378 * 1.08925 * 5 4 2 21 21 C 1.54909 * 104.83184 * 335.87116 * 20 5 4 22 22 H 1.08994 * 111.00706 * 278.89343 * 21 20 5 23 23 O 1.42905 * 111.00086 * 155.08239 * 21 20 5 24 24 H 1.09001 * 109.46349 * 183.23379 * 1 2 3 25 25 H 1.08998 * 109.46807 * 303.22867 * 1 2 3 26 26 H 1.08994 * 109.47279 * 63.23368 * 1 2 3 27 27 H 1.08998 * 109.84556 * 21.09625 * 4 2 1 28 28 H 1.09004 * 110.02878 * 260.01450 * 4 2 1 29 29 H 1.09005 * 109.47066 * 90.00020 * 10 9 6 30 30 H 1.08997 * 109.47195 * 210.00142 * 10 9 6 31 31 H 1.08995 * 109.47282 * 330.00404 * 10 9 6 32 32 H 1.08995 * 109.47011 * 215.00237 * 11 9 6 33 33 H 1.09004 * 109.46640 * 334.99486 * 11 9 6 34 34 H 0.96996 * 120.00194 * 179.97438 * 15 14 12 35 35 H 1.09007 * 110.36412 * 217.03893 * 20 5 4 36 36 H 1.08992 * 110.36743 * 94.71512 * 20 5 4 37 37 H 0.96696 * 114.00036 * 64.58481 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0772 -0.7915 1.2071 5 7 3.2451 -1.5516 0.7382 6 16 4.1637 -2.5756 1.6600 7 8 3.3368 -2.9979 2.7357 8 8 4.7860 -3.4792 0.7569 9 7 5.3795 -1.6736 2.3311 10 6 5.1817 -1.0302 3.6323 11 6 6.6529 -1.5187 1.6234 12 6 6.6324 -0.2401 0.8261 13 1 5.7584 0.3941 0.8450 14 6 7.7298 0.1207 0.0734 15 7 8.7944 -0.6513 0.0509 16 14 7.7040 1.7053 -0.9154 17 1 7.5028 2.8570 0.0003 18 1 8.9949 1.8622 -1.6326 19 1 6.5939 1.6561 -1.9004 20 6 3.4633 -1.2505 -0.6884 21 6 2.0790 -0.7954 -1.2139 22 1 1.4449 -1.6531 -1.4382 23 8 2.2179 0.0486 -2.3587 24 1 -0.3632 -1.0261 0.0580 25 1 -0.3633 0.5631 0.8596 26 1 -0.3633 0.4628 -0.9175 27 1 1.3139 -1.4757 1.5777 28 1 2.3756 -0.1050 1.9995 29 1 5.4956 -1.7095 4.4249 30 1 5.7750 -0.1172 3.6801 31 1 4.1273 -0.7855 3.7601 32 1 7.4681 -1.4833 2.3460 33 1 6.7999 -2.3639 0.9510 34 1 9.5663 -0.3977 -0.4789 35 1 3.7952 -2.1435 -1.2181 36 1 4.1935 -0.4491 -0.7996 37 1 2.6033 -0.3925 -3.1281 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350870583.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:45 Heat of formation + Delta-G solvation = -150.902564 kcal Electronic energy + Delta-G solvation = -21446.889175 eV Core-core repulsion = 18156.912153 eV Total energy + Delta-G solvation = -3289.977022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10283 -38.38823 -37.24523 -36.96313 -36.59492 -34.51139 -33.31435 -29.74136 -29.41722 -26.96157 -26.75377 -24.23522 -23.33163 -21.33151 -20.03039 -18.95962 -18.73775 -18.43660 -18.03653 -17.30005 -16.62656 -16.11437 -15.63057 -15.14736 -15.08889 -14.79629 -14.58456 -14.26191 -14.05206 -13.95704 -13.51127 -13.44767 -13.31733 -13.22411 -13.05186 -12.94850 -12.91112 -12.52155 -12.41604 -12.36343 -12.00625 -11.86249 -11.76788 -11.34162 -11.03872 -10.60117 -10.03639 -9.78422 -8.19253 -6.33542 -0.41194 1.42484 1.43765 1.51485 1.89872 2.40391 2.50168 3.11240 3.15325 3.20759 3.58860 3.75799 3.99095 4.06757 4.27513 4.38686 4.47807 4.56490 4.67006 4.71764 4.75759 4.90651 4.96182 5.01385 5.04126 5.13207 5.18978 5.25976 5.36604 5.43069 5.49615 5.71883 5.90114 6.06964 6.78100 6.83387 7.36831 8.88787 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.008956 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.122247 B = 3125.498776 C = 4338.390920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 H 0.085 0.915 4 C 0.118 3.882 5 N -1.012 6.012 6 S 2.814 3.186 7 O -0.998 6.998 8 O -1.011 7.011 9 N -1.004 6.004 10 C 0.098 3.902 11 C 0.258 3.742 12 C -0.541 4.541 13 H 0.069 0.931 14 C 0.013 3.987 15 N -0.928 5.928 16 Si 0.958 3.042 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.264 1.264 20 C 0.085 3.915 21 C 0.106 3.894 22 H 0.092 0.908 23 O -0.567 6.567 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.021 0.979 33 H 0.018 0.982 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.536 2.587 -0.325 15.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.006 4.006 5 N -0.854 5.854 6 S 2.824 3.176 7 O -0.982 6.982 8 O -0.995 6.995 9 N -0.845 5.845 10 C -0.047 4.047 11 C 0.135 3.865 12 C -0.580 4.580 13 H 0.087 0.913 14 C -0.187 4.187 15 N -0.568 5.568 16 Si 0.783 3.217 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.041 4.041 21 C 0.045 3.955 22 H 0.110 0.890 23 O -0.374 6.374 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.695 2.007 0.212 15.824 hybrid contribution 1.239 0.533 -0.865 1.602 sum -14.456 2.541 -0.653 14.692 Atomic orbital electron populations 1.21730 0.91358 1.02971 1.03123 1.22206 0.97939 0.99411 0.91433 0.89645 1.22047 0.86540 0.94700 0.97345 1.58708 1.42655 1.63193 1.20829 1.00723 0.71791 0.73149 0.71947 1.93519 1.68660 1.80983 1.55022 1.93517 1.76956 1.62685 1.66378 1.57634 1.28248 1.68975 1.29671 1.21466 1.02091 0.98487 0.82696 1.18772 0.80209 0.96328 0.91239 1.21749 1.01305 1.06995 1.27987 0.91318 1.25802 0.94934 1.00307 0.97660 1.70056 1.05567 1.39384 1.41775 0.85604 0.77530 0.79594 0.78978 1.19325 1.21182 1.18917 1.22777 0.99830 1.01214 0.80325 1.23029 0.92978 0.93140 0.86303 0.89037 1.86451 1.85873 1.41470 1.23612 0.91532 0.90760 0.91558 0.89657 0.90809 0.92384 0.90806 0.90428 0.96109 0.96380 0.92476 0.90900 0.91898 0.75313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.16 71.98 0.66 -1.50 16 2 C -0.09 -2.01 3.29 -9.59 -0.03 -2.04 16 3 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 4 C 0.12 3.03 6.59 86.74 0.57 3.60 16 5 N -1.01 -33.85 3.76 -506.34 -1.90 -35.75 16 6 S 2.81 113.75 6.31 -56.49 -0.36 113.39 16 7 O -1.00 -39.99 16.79 -128.00 -2.15 -42.14 16 8 O -1.01 -48.39 16.01 -128.00 -2.05 -50.44 16 9 N -1.00 -42.35 3.23 -543.24 -1.75 -44.11 16 10 C 0.10 3.31 10.31 127.77 1.32 4.63 16 11 C 0.26 13.29 5.41 85.63 0.46 13.75 16 12 C -0.54 -28.51 9.38 25.60 0.24 -28.27 16 13 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 14 C 0.01 0.68 5.46 84.65 0.46 1.14 16 15 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 16 Si 0.96 42.21 29.54 68.60 2.03 44.23 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 18 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 20 C 0.08 2.74 6.84 86.86 0.59 3.34 16 21 C 0.11 2.56 3.88 31.99 0.12 2.68 16 22 H 0.09 1.85 8.05 -2.39 -0.02 1.83 16 23 O -0.57 -13.27 13.47 -148.98 -2.01 -15.27 16 24 H 0.07 0.97 8.06 -2.39 -0.02 0.95 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.09 1.93 7.77 -2.39 -0.02 1.91 16 28 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 31 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 32 H 0.02 1.12 8.11 -2.39 -0.02 1.10 16 33 H 0.02 1.05 6.91 -2.39 -0.02 1.03 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.07 2.42 7.78 -2.38 -0.02 2.40 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.40 6.31 9.12 -74.06 -0.68 5.63 16 Total: -1.00 -69.58 320.66 -3.12 -72.70 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.39 Total: 13.76 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 4.40 Total: -2.68 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -3.37 Total: -133.55 kcal Atomic # 8 Polarization: -101.65 SS G_CDS: -6.21 Total: -107.85 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 113.75 SS G_CDS: -0.36 Total: 113.39 kcal Total: -69.58 -3.12 -72.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870583.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.204 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds