Wall clock time and date at job start Tue Mar 31 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.92081 * 2 1 4 4 C 1.54918 * 111.00487 * 236.10116 * 2 1 3 5 5 N 1.47422 * 104.83543 * 204.91504 * 4 2 1 6 6 S 1.65598 * 125.64832 * 204.09048 * 5 4 2 7 7 O 1.42093 * 106.39963 * 23.56104 * 6 5 4 8 8 O 1.42101 * 106.39922 * 156.47736 * 6 5 4 9 9 N 1.65597 * 107.21722 * 270.01684 * 6 5 4 10 10 C 1.46501 * 119.99829 * 90.00440 * 9 6 5 11 11 C 1.46502 * 120.00200 * 269.99965 * 9 6 5 12 12 C 1.50695 * 109.46742 * 95.00365 * 11 9 6 13 13 H 1.07999 * 120.00539 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99556 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00029 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00252 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47145 * 89.99859 * 16 14 12 18 18 H 1.48500 * 109.47217 * 210.00062 * 16 14 12 19 19 H 1.48498 * 109.47216 * 330.00073 * 16 14 12 20 20 C 1.47022 * 108.70013 * 24.13008 * 5 4 2 21 21 C 1.54322 * 107.27269 * 358.93759 * 20 5 4 22 22 H 1.09007 * 110.72008 * 96.35019 * 21 20 5 23 23 O 1.42905 * 110.71976 * 219.44332 * 21 20 5 24 24 H 1.09001 * 109.46782 * 296.09514 * 1 2 3 25 25 H 1.08995 * 109.47072 * 56.09228 * 1 2 3 26 26 H 1.08997 * 109.47326 * 176.09497 * 1 2 3 27 27 H 1.09006 * 110.36678 * 86.07594 * 4 2 1 28 28 H 1.08998 * 110.36447 * 323.75691 * 4 2 1 29 29 H 1.09001 * 109.47078 * 89.99558 * 10 9 6 30 30 H 1.09001 * 109.47331 * 209.99541 * 10 9 6 31 31 H 1.08995 * 109.46861 * 329.99761 * 10 9 6 32 32 H 1.08998 * 109.47111 * 215.00194 * 11 9 6 33 33 H 1.08995 * 109.46673 * 335.00171 * 11 9 6 34 34 H 0.96998 * 120.00161 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.87976 * 239.52290 * 20 5 4 36 36 H 1.09005 * 110.01113 * 118.43119 * 20 5 4 37 37 H 0.96695 * 113.99926 * 298.54785 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7735 6 16 4.6810 -1.6344 -1.7820 7 8 4.4304 -0.9671 -3.0112 8 8 5.8726 -1.4548 -1.0289 9 7 4.5677 -3.2559 -2.0985 10 6 3.7856 -3.7255 -3.2448 11 6 5.2496 -4.2207 -1.2323 12 6 4.2883 -4.7238 -0.1865 13 1 3.2713 -4.3608 -0.1684 14 6 4.7076 -5.6467 0.7482 15 7 3.8686 -6.0862 1.6607 16 14 6.4668 -6.2740 0.7175 17 1 7.3187 -5.4001 1.5635 18 1 6.5065 -7.6624 1.2429 19 1 6.9737 -6.2582 -0.6782 20 6 3.4674 -1.2742 0.6958 21 6 2.0862 -0.8080 1.2021 22 1 1.4478 -1.6634 1.4238 23 8 2.2252 0.0283 2.3525 24 1 -0.3633 0.4520 0.9229 25 1 -0.3633 0.5733 -0.8529 26 1 -0.3634 -1.0252 -0.0700 27 1 2.1559 -0.1719 -2.0838 28 1 1.4518 -1.6703 -1.4026 29 1 4.4280 -3.7844 -4.1234 30 1 3.3774 -4.7124 -3.0264 31 1 2.9694 -3.0293 -3.4375 32 1 5.6057 -5.0587 -1.8315 33 1 6.0960 -3.7367 -0.7452 34 1 4.1636 -6.7352 2.3184 35 1 4.2426 -0.5998 1.0598 36 1 3.6662 -2.2885 1.0421 37 1 2.6405 -0.4087 3.1085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350870584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:48 Heat of formation + Delta-G solvation = -121.275402 kcal Electronic energy + Delta-G solvation = -21443.843326 eV Core-core repulsion = 18155.151034 eV Total energy + Delta-G solvation = -3288.692292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.93420 -36.77463 -35.66403 -35.43200 -35.32978 -32.51589 -32.21029 -28.49343 -28.15894 -25.90730 -25.20153 -22.22739 -21.81790 -20.31590 -18.49894 -17.57457 -17.20066 -16.88231 -16.66223 -15.93094 -15.17326 -14.42297 -14.31165 -13.94114 -13.53363 -13.37501 -13.14988 -12.98876 -12.59058 -12.53674 -12.44287 -11.96088 -11.86942 -11.83874 -11.64979 -11.42454 -11.30823 -11.28406 -10.90212 -10.75639 -10.52879 -10.28136 -10.24780 -9.89628 -9.64680 -8.71692 -8.65182 -8.14835 -6.23176 -4.23708 1.11710 3.21843 3.28284 3.32507 3.37067 4.02444 4.27650 4.29627 4.46937 4.66628 5.03275 5.10818 5.16096 5.37944 5.45638 5.51503 5.57005 5.60913 5.86161 5.88851 5.96343 6.02391 6.10482 6.17774 6.25000 6.34875 6.37783 6.48389 6.66649 6.79915 7.06345 7.34279 7.48356 7.73751 8.34200 8.79488 9.37855 10.88763 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.007994 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.695631 B = 3501.981306 C = 4370.837238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.090 0.910 4 C 0.123 3.877 5 N -1.010 6.010 6 S 2.803 3.197 7 O -0.992 6.992 8 O -0.976 6.976 9 N -0.992 5.992 10 C 0.106 3.894 11 C 0.212 3.788 12 C -0.542 4.542 13 H 0.081 0.919 14 C 0.077 3.923 15 N -0.893 5.893 16 Si 0.869 3.131 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.088 3.912 21 C 0.100 3.900 22 H 0.077 0.923 23 O -0.563 6.563 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.087 8.254 -3.262 10.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.108 0.892 4 C -0.003 4.003 5 N -0.849 5.849 6 S 2.813 3.187 7 O -0.977 6.977 8 O -0.960 6.960 9 N -0.833 5.833 10 C -0.041 4.041 11 C 0.089 3.911 12 C -0.581 4.581 13 H 0.099 0.901 14 C -0.127 4.127 15 N -0.531 5.531 16 Si 0.696 3.304 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.038 4.038 21 C 0.040 3.960 22 H 0.095 0.905 23 O -0.368 6.368 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -4.632 9.108 -3.903 10.938 hybrid contribution 0.852 -1.323 0.665 1.708 sum -3.779 7.785 -3.238 9.240 Atomic orbital electron populations 1.21703 0.93669 1.02285 1.02123 1.22332 0.96091 0.99962 0.92989 0.89184 1.22042 0.83097 0.97918 0.97241 1.58866 1.26723 1.82570 1.16778 1.01242 0.72550 0.72800 0.72149 1.93538 1.86257 1.73977 1.43897 1.93559 1.44182 1.85679 1.72624 1.57507 1.63431 1.24960 1.37363 1.21251 0.94384 1.01305 0.87143 1.19615 0.93241 0.88513 0.89765 1.21444 0.99188 1.25356 1.12078 0.90075 1.24853 0.97292 0.95652 0.94896 1.69884 1.35070 1.31181 1.16933 0.86949 0.85554 0.78617 0.79321 1.19692 1.20991 1.18830 1.22492 0.98052 1.03637 0.79592 1.22934 0.94947 0.92516 0.85620 0.90476 1.86446 1.84192 1.42148 1.24048 0.91928 0.92298 0.92167 0.90070 0.91357 0.93595 0.90563 0.92624 0.94524 0.93948 0.92450 0.91146 0.88830 0.77039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.31 37.16 0.35 -1.13 16 2 C -0.09 -1.21 3.36 -88.47 -0.30 -1.51 16 3 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.12 1.75 6.57 -2.53 -0.02 1.73 16 5 N -1.01 -17.62 3.76 -111.41 -0.42 -18.04 16 6 S 2.80 55.85 6.31 -107.50 -0.68 55.17 16 7 O -0.99 -20.14 16.53 -57.17 -0.95 -21.08 16 8 O -0.98 -22.22 16.27 -57.17 -0.93 -23.15 16 9 N -0.99 -19.99 3.23 -123.06 -0.40 -20.38 16 10 C 0.11 1.76 10.31 59.85 0.62 2.38 16 11 C 0.21 4.90 4.48 -5.19 -0.02 4.87 16 12 C -0.54 -13.93 9.49 -34.44 -0.33 -14.26 16 13 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 14 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 15 N -0.89 -25.17 13.96 55.43 0.77 -24.40 16 16 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 20 C 0.09 1.50 6.76 -3.06 -0.02 1.48 16 21 C 0.10 1.42 3.80 -24.90 -0.09 1.33 16 22 H 0.08 1.10 8.04 -51.92 -0.42 0.68 16 23 O -0.56 -7.49 13.39 -35.23 -0.47 -7.96 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.08 1.09 7.78 -51.93 -0.40 0.68 16 28 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.06 0.82 7.79 -51.93 -0.40 0.42 16 32 H 0.04 0.83 7.17 -51.93 -0.37 0.46 16 33 H 0.04 1.02 6.34 -51.93 -0.33 0.69 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.07 1.19 8.06 -51.92 -0.42 0.77 16 36 H 0.09 1.82 7.69 -51.93 -0.40 1.42 16 37 H 0.38 3.77 9.11 45.56 0.42 4.19 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -31.78 316.26 -7.75 -39.53 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.86 Total: 2.98 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 0.09 Total: -3.15 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.04 Total: -62.82 kcal Atomic # 8 Polarization: -49.85 SS G_CDS: -2.35 Total: -52.20 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 16 Polarization: 55.85 SS G_CDS: -0.68 Total: 55.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.78 -7.75 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.743 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds