Wall clock time and date at job start Tue Mar 31 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.92081 * 2 1 4 4 C 1.54918 * 111.00487 * 236.10116 * 2 1 3 5 5 N 1.47422 * 104.83543 * 204.91504 * 4 2 1 6 6 S 1.65598 * 125.64832 * 204.09048 * 5 4 2 7 7 O 1.42093 * 106.39963 * 23.56104 * 6 5 4 8 8 O 1.42101 * 106.39922 * 156.47736 * 6 5 4 9 9 N 1.65597 * 107.21722 * 270.01684 * 6 5 4 10 10 C 1.46501 * 119.99829 * 90.00440 * 9 6 5 11 11 C 1.46502 * 120.00200 * 269.99965 * 9 6 5 12 12 C 1.50695 * 109.46742 * 95.00365 * 11 9 6 13 13 H 1.07999 * 120.00539 * 359.97438 * 12 11 9 14 14 C 1.37880 * 119.99556 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00029 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 120.00252 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47145 * 89.99859 * 16 14 12 18 18 H 1.48500 * 109.47217 * 210.00062 * 16 14 12 19 19 H 1.48498 * 109.47216 * 330.00073 * 16 14 12 20 20 C 1.47022 * 108.70013 * 24.13008 * 5 4 2 21 21 C 1.54322 * 107.27269 * 358.93759 * 20 5 4 22 22 H 1.09007 * 110.72008 * 96.35019 * 21 20 5 23 23 O 1.42905 * 110.71976 * 219.44332 * 21 20 5 24 24 H 1.09001 * 109.46782 * 296.09514 * 1 2 3 25 25 H 1.08995 * 109.47072 * 56.09228 * 1 2 3 26 26 H 1.08997 * 109.47326 * 176.09497 * 1 2 3 27 27 H 1.09006 * 110.36678 * 86.07594 * 4 2 1 28 28 H 1.08998 * 110.36447 * 323.75691 * 4 2 1 29 29 H 1.09001 * 109.47078 * 89.99558 * 10 9 6 30 30 H 1.09001 * 109.47331 * 209.99541 * 10 9 6 31 31 H 1.08995 * 109.46861 * 329.99761 * 10 9 6 32 32 H 1.08998 * 109.47111 * 215.00194 * 11 9 6 33 33 H 1.08995 * 109.46673 * 335.00171 * 11 9 6 34 34 H 0.96998 * 120.00161 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.87976 * 239.52290 * 20 5 4 36 36 H 1.09005 * 110.01113 * 118.43119 * 20 5 4 37 37 H 0.96695 * 113.99926 * 298.54785 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0853 -0.8066 -1.2004 5 7 3.4271 -1.2431 -0.7735 6 16 4.6810 -1.6344 -1.7820 7 8 4.4304 -0.9671 -3.0112 8 8 5.8726 -1.4548 -1.0289 9 7 4.5677 -3.2559 -2.0985 10 6 3.7856 -3.7255 -3.2448 11 6 5.2496 -4.2207 -1.2323 12 6 4.2883 -4.7238 -0.1865 13 1 3.2713 -4.3608 -0.1684 14 6 4.7076 -5.6467 0.7482 15 7 3.8686 -6.0862 1.6607 16 14 6.4668 -6.2740 0.7175 17 1 7.3187 -5.4001 1.5635 18 1 6.5065 -7.6624 1.2429 19 1 6.9737 -6.2582 -0.6782 20 6 3.4674 -1.2742 0.6958 21 6 2.0862 -0.8080 1.2021 22 1 1.4478 -1.6634 1.4238 23 8 2.2252 0.0283 2.3525 24 1 -0.3633 0.4520 0.9229 25 1 -0.3633 0.5733 -0.8529 26 1 -0.3634 -1.0252 -0.0700 27 1 2.1559 -0.1719 -2.0838 28 1 1.4518 -1.6703 -1.4026 29 1 4.4280 -3.7844 -4.1234 30 1 3.3774 -4.7124 -3.0264 31 1 2.9694 -3.0293 -3.4375 32 1 5.6057 -5.0587 -1.8315 33 1 6.0960 -3.7367 -0.7452 34 1 4.1636 -6.7352 2.3184 35 1 4.2426 -0.5998 1.0598 36 1 3.6662 -2.2885 1.0421 37 1 2.6405 -0.4087 3.1085 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350870584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:48 Heat of formation + Delta-G solvation = -147.349640 kcal Electronic energy + Delta-G solvation = -21444.973990 eV Core-core repulsion = 18155.151034 eV Total energy + Delta-G solvation = -3289.822956 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11715 -38.42115 -37.32444 -36.99049 -36.57777 -34.50067 -33.32366 -30.28369 -29.44153 -27.00590 -26.74927 -23.87283 -23.28724 -21.40426 -20.02264 -19.23262 -18.80950 -18.33600 -18.16856 -17.42532 -16.59876 -16.19411 -15.60902 -15.44948 -14.88991 -14.65413 -14.53530 -14.35533 -14.18954 -14.06189 -13.71820 -13.50254 -13.35950 -13.24705 -13.15396 -13.03987 -12.89691 -12.45704 -12.38924 -12.29500 -12.01572 -11.93186 -11.67660 -11.34417 -11.05088 -10.77271 -10.05246 -9.77988 -8.29221 -6.32706 -0.44123 1.35986 1.39973 1.46477 1.85773 2.33929 2.48114 3.04915 3.12735 3.20653 3.49678 3.74687 3.98669 4.08393 4.21356 4.44243 4.48667 4.55446 4.64469 4.71560 4.78030 4.84589 4.90227 4.91858 4.98421 5.01108 5.13513 5.24698 5.28104 5.36087 5.44067 5.47634 5.77585 6.30539 6.71226 6.78581 7.31219 8.85076 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.007994 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.695631 B = 3501.981306 C = 4370.837238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.088 4.088 3 H 0.090 0.910 4 C 0.115 3.885 5 N -1.013 6.013 6 S 2.813 3.187 7 O -0.995 6.995 8 O -1.009 7.009 9 N -0.998 5.998 10 C 0.096 3.904 11 C 0.218 3.782 12 C -0.533 4.533 13 H 0.057 0.943 14 C 0.027 3.973 15 N -0.932 5.932 16 Si 0.919 3.081 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.246 1.246 20 C 0.089 3.911 21 C 0.108 3.892 22 H 0.077 0.923 23 O -0.566 6.566 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.500 8.802 -4.226 11.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.109 0.891 4 C -0.010 4.010 5 N -0.854 5.854 6 S 2.823 3.177 7 O -0.979 6.979 8 O -0.993 6.993 9 N -0.839 5.839 10 C -0.049 4.049 11 C 0.093 3.907 12 C -0.572 4.572 13 H 0.075 0.925 14 C -0.173 4.173 15 N -0.571 5.571 16 Si 0.743 3.257 17 H -0.199 1.199 18 H -0.205 1.205 19 H -0.170 1.170 20 C -0.038 4.038 21 C 0.047 3.953 22 H 0.094 0.906 23 O -0.374 6.374 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -5.047 9.661 -4.895 11.949 hybrid contribution 0.907 -1.436 0.968 1.955 sum -4.140 8.225 -3.927 10.011 Atomic orbital electron populations 1.21680 0.91481 1.02856 1.03189 1.22356 0.97773 0.99321 0.91323 0.89133 1.22345 0.81535 0.98774 0.98339 1.58701 1.27653 1.82326 1.16689 1.00779 0.72339 0.72678 0.71927 1.93526 1.86342 1.73948 1.44109 1.93510 1.46384 1.86124 1.73328 1.57482 1.63937 1.24491 1.37951 1.21511 0.95091 1.01742 0.86535 1.19391 0.92442 0.89198 0.89643 1.21576 0.98609 1.24560 1.12482 0.92470 1.25555 1.00802 0.96190 0.94756 1.69992 1.36911 1.32270 1.17963 0.86135 0.81262 0.78087 0.80189 1.19854 1.20520 1.16977 1.22480 1.00031 1.01756 0.79521 1.22850 0.93025 0.92948 0.86462 0.90552 1.86422 1.84288 1.42322 1.24325 0.91621 0.90357 0.91988 0.88860 0.90372 0.91631 0.90668 0.90676 0.93476 0.94967 0.92400 0.91480 0.92036 0.75443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.31 71.98 0.67 -1.80 16 2 C -0.09 -2.10 3.36 -9.40 -0.03 -2.13 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 4 C 0.11 3.07 6.57 86.86 0.57 3.64 16 5 N -1.01 -34.80 3.76 -506.40 -1.90 -36.70 16 6 S 2.81 110.26 6.31 -56.49 -0.36 109.90 16 7 O -0.99 -38.81 16.53 -128.00 -2.12 -40.93 16 8 O -1.01 -46.08 16.27 -128.00 -2.08 -48.16 16 9 N -1.00 -39.28 3.23 -543.24 -1.75 -41.03 16 10 C 0.10 3.03 10.31 127.77 1.32 4.35 16 11 C 0.22 9.92 4.48 85.63 0.38 10.30 16 12 C -0.53 -27.59 9.49 25.60 0.24 -27.35 16 13 H 0.06 3.18 8.06 -2.91 -0.02 3.15 16 14 C 0.03 1.44 5.47 84.65 0.46 1.90 16 15 N -0.93 -53.27 13.96 21.45 0.30 -52.97 16 16 Si 0.92 41.51 27.47 68.60 1.88 43.40 16 17 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 19 H -0.25 -10.34 6.54 99.48 0.65 -9.69 16 20 C 0.09 3.04 6.76 86.73 0.59 3.63 16 21 C 0.11 2.98 3.80 31.78 0.12 3.10 16 22 H 0.08 2.13 8.04 -2.38 -0.02 2.11 16 23 O -0.57 -14.42 13.39 -148.98 -2.00 -16.42 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.13 8.07 -2.39 -0.02 1.11 16 27 H 0.09 2.28 7.78 -2.38 -0.02 2.26 16 28 H 0.08 1.94 7.98 -2.39 -0.02 1.92 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 31 H 0.07 2.05 7.79 -2.39 -0.02 2.03 16 32 H 0.05 2.05 7.17 -2.39 -0.02 2.03 16 33 H 0.03 1.54 6.34 -2.39 -0.02 1.53 16 34 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.07 2.30 8.06 -2.38 -0.02 2.28 16 36 H 0.06 2.49 7.69 -2.38 -0.02 2.47 16 37 H 0.40 7.52 9.11 -74.06 -0.67 6.84 16 Total: -1.00 -66.89 316.26 -3.36 -70.25 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.33 Total: 17.03 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 4.32 Total: -4.37 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -3.35 Total: -130.70 kcal Atomic # 8 Polarization: -99.31 SS G_CDS: -6.19 Total: -105.51 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: 110.26 SS G_CDS: -0.36 Total: 109.90 kcal Total: -66.89 -3.36 -70.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350870584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.101 kcal (2) G-P(sol) polarization free energy of solvation -66.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds