Wall clock time and date at job start Tue Mar 31 2020 00:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47120 * 2 1 4 4 O 1.21310 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.46753 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.40130 * 120.09584 * 359.72272 * 5 3 2 7 7 C 1.36532 * 119.89727 * 179.69430 * 6 5 3 8 8 C 1.39333 * 120.09906 * 0.58279 * 7 6 5 9 9 N 1.38887 * 119.90471 * 179.69170 * 8 7 6 10 10 C 1.46502 * 119.99845 * 5.77924 * 9 8 7 11 11 C 1.50707 * 109.46852 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99995 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00216 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47187 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47273 * 119.99903 * 15 13 11 18 18 H 1.48496 * 109.47348 * 239.99901 * 15 13 11 19 19 C 1.39298 * 120.18840 * 359.71351 * 8 7 6 20 20 N 1.48012 * 119.94957 * 180.02562 * 19 8 7 21 21 O 1.21799 * 120.00141 * 173.82877 * 20 19 8 22 22 O 1.21799 * 120.00069 * 353.82735 * 20 19 8 23 23 C 1.36559 * 120.09987 * 359.97438 * 19 8 7 24 24 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47225 * 300.00460 * 1 2 3 26 26 H 1.09002 * 109.47144 * 59.99907 * 1 2 3 27 27 H 1.09002 * 109.46913 * 119.99592 * 2 1 3 28 28 H 1.08998 * 109.47225 * 239.99540 * 2 1 3 29 29 H 1.07991 * 120.04795 * 0.02562 * 6 5 3 30 30 H 1.08004 * 119.94798 * 180.29180 * 7 6 5 31 31 H 0.96995 * 119.99836 * 185.78083 * 9 8 7 32 32 H 1.08996 * 109.47601 * 299.99775 * 10 9 8 33 33 H 1.09000 * 109.46803 * 60.00263 * 10 9 8 34 34 H 0.96995 * 120.00342 * 180.02562 * 14 13 11 35 35 H 1.07994 * 120.05062 * 180.02562 * 23 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3429 -0.0005 5 6 3.4751 1.6889 -0.0006 6 6 4.3875 0.6253 0.0048 7 6 5.7289 0.8794 -0.0021 8 6 6.1912 2.1938 -0.0021 9 7 7.5567 2.4476 -0.0027 10 6 8.5074 1.3404 -0.1309 11 6 9.9141 1.8806 -0.1043 12 1 10.0829 2.9424 -0.0025 13 6 10.9854 1.0193 -0.2110 14 7 10.7798 -0.2736 -0.3365 15 14 12.7289 1.6889 -0.1788 16 1 12.6893 3.1660 -0.0305 17 1 13.4656 1.0966 0.9666 18 1 13.4181 1.3364 -1.4460 19 6 5.2877 3.2540 -0.0012 20 7 5.7846 4.6483 -0.0018 21 8 5.0010 5.5740 -0.1143 22 8 6.9770 4.8699 0.1103 23 6 3.9443 3.0090 -0.0007 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 4.0300 -0.3937 0.0089 30 1 6.4328 0.0602 -0.0028 31 1 7.8808 3.3579 0.0819 32 1 8.3692 0.6450 0.6969 33 1 8.3356 0.8215 -1.0740 34 1 11.5335 -0.8796 -0.4112 35 1 3.2445 3.8316 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358914139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:32 Heat of formation + Delta-G solvation = -23.549771 kcal Electronic energy + Delta-G solvation = -20877.470291 eV Core-core repulsion = 17457.571749 eV Total energy + Delta-G solvation = -3419.898542 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.96345 -40.09754 -38.69742 -36.53392 -35.40146 -33.27292 -32.86634 -31.81403 -30.12518 -27.38587 -26.44738 -24.72485 -23.44463 -22.74458 -21.32359 -20.21403 -18.46774 -18.35945 -17.55389 -17.23543 -16.56029 -15.99663 -15.67394 -15.56379 -15.03481 -14.53879 -14.12789 -14.02106 -13.47548 -13.29243 -12.98195 -12.47807 -12.37536 -12.31805 -12.06430 -11.59536 -11.35061 -11.21788 -11.11931 -11.06512 -10.90620 -10.73558 -10.36265 -10.10978 -9.75586 -9.64519 -9.59545 -8.79752 -7.44804 -6.43189 -4.49945 0.27210 0.75791 1.62684 1.75250 2.39135 3.12495 3.20937 3.25682 3.60588 3.69247 3.93407 4.19664 4.50911 4.68579 4.85963 4.92508 4.95575 5.00019 5.06600 5.15870 5.41643 5.59727 5.68832 5.73239 5.87118 5.98101 6.02336 6.14217 6.35563 6.60381 6.73544 6.94136 7.25021 7.52576 7.60593 7.63932 7.91164 8.19348 8.57478 9.18227 10.67138 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.004245 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.863159 B = 6594.266258 C = 7837.146250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.170 4.170 3 C 0.406 3.594 4 O -0.468 6.468 5 C -0.263 4.263 6 C 0.017 3.983 7 C -0.210 4.210 8 C 0.313 3.687 9 N -0.662 5.662 10 C 0.229 3.771 11 C -0.547 4.547 12 H 0.070 0.930 13 C 0.068 3.932 14 N -0.888 5.888 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.160 4.160 20 N 0.057 4.943 21 O -0.175 6.175 22 O -0.202 6.202 23 C 0.058 3.942 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.142 0.858 30 H 0.154 0.846 31 H 0.419 0.581 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.268 0.732 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.169 -2.851 0.685 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.207 4.207 3 C 0.286 3.714 4 O -0.345 6.345 5 C -0.268 4.268 6 C -0.003 4.003 7 C -0.232 4.232 8 C 0.185 3.815 9 N -0.286 5.286 10 C 0.109 3.891 11 C -0.585 4.585 12 H 0.088 0.912 13 C -0.137 4.137 14 N -0.525 5.525 15 Si 0.735 3.265 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.252 4.252 20 N 0.563 4.437 21 O -0.388 6.388 22 O -0.400 6.400 23 C 0.038 3.962 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.172 0.828 31 H 0.268 0.732 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.311 -3.221 0.656 14.684 hybrid contribution 1.433 0.795 0.023 1.639 sum -12.878 -2.426 0.679 13.122 Atomic orbital electron populations 1.21584 0.93783 1.01625 1.03064 1.21973 0.98213 0.95840 1.04671 1.22109 0.87236 0.91125 0.70945 1.90527 1.58321 1.47705 1.37908 1.19892 0.95388 0.92318 1.19227 1.21179 0.92016 0.98912 0.88195 1.20627 0.96686 0.94258 1.11671 1.18116 0.85397 0.92204 0.85738 1.47231 1.01726 1.15682 1.63990 1.19644 0.86984 0.84670 0.97794 1.21170 0.89467 0.94652 1.53198 0.91186 1.24911 1.00016 0.94675 0.94049 1.69922 1.32224 1.02205 1.48141 0.86264 0.82868 0.79476 0.77921 1.19270 1.20580 1.20583 1.20076 0.94457 0.79718 1.30941 1.43406 1.00340 1.03108 0.96818 1.94486 1.53402 1.36952 1.53996 1.94215 0.99809 1.89669 1.56293 1.20623 0.92181 0.98136 0.85280 0.92160 0.92177 0.92156 0.88307 0.88285 0.84007 0.82804 0.73224 0.94435 0.94477 0.92192 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.20 37.15 0.34 -0.81 16 2 C -0.17 -1.33 5.02 -27.88 -0.14 -1.47 16 3 C 0.41 4.77 7.10 -30.87 -0.22 4.55 16 4 O -0.47 -6.93 15.96 5.53 0.09 -6.85 16 5 C -0.26 -3.34 5.87 -105.05 -0.62 -3.96 16 6 C 0.02 0.20 9.42 -39.49 -0.37 -0.18 16 7 C -0.21 -3.01 9.24 -39.79 -0.37 -3.37 16 8 C 0.31 5.43 6.63 -83.86 -0.56 4.87 16 9 N -0.66 -13.25 5.58 -59.80 -0.33 -13.59 16 10 C 0.23 5.19 4.68 -5.19 -0.02 5.16 16 11 C -0.55 -13.91 9.28 -34.44 -0.32 -14.23 16 12 H 0.07 1.78 7.60 -52.49 -0.40 1.38 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -23.55 13.29 55.43 0.74 -22.82 16 15 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 17 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 C -0.16 -2.73 6.82 -80.16 -0.55 -3.28 16 20 N 0.06 1.08 4.45 33.86 0.15 1.23 16 21 O -0.18 -3.27 18.44 -29.46 -0.54 -3.82 16 22 O -0.20 -4.05 15.70 -29.46 -0.46 -4.51 16 23 C 0.06 0.86 9.05 -39.49 -0.36 0.50 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 26 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.10 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.14 1.03 7.03 -52.49 -0.37 0.66 16 30 H 0.15 2.19 6.69 -52.48 -0.35 1.84 16 31 H 0.42 8.69 4.73 -41.33 -0.20 8.50 16 32 H 0.04 0.87 7.71 -51.93 -0.40 0.47 16 33 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 34 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 35 H 0.15 2.26 7.17 -52.49 -0.38 1.89 16 LS Contribution 309.91 15.07 4.67 4.67 Total: -1.00 -28.33 309.91 -7.74 -36.07 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.75 Total: 5.21 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -3.28 Total: -10.56 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.55 Total: -35.17 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.92 Total: -15.17 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.33 -7.74 -36.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358914139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.523 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds