Wall clock time and date at job start Tue Mar 31 2020 00:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47120 * 2 1 4 4 O 1.21310 * 120.00309 * 359.97438 * 3 2 1 5 5 C 1.46753 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.40130 * 120.09584 * 359.72272 * 5 3 2 7 7 C 1.36532 * 119.89727 * 179.69430 * 6 5 3 8 8 C 1.39333 * 120.09906 * 0.58279 * 7 6 5 9 9 N 1.38887 * 119.90471 * 179.69170 * 8 7 6 10 10 C 1.46502 * 119.99845 * 5.77924 * 9 8 7 11 11 C 1.50707 * 109.46852 * 179.97438 * 10 9 8 12 12 H 1.07997 * 120.00134 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99995 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99901 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00216 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47187 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47273 * 119.99903 * 15 13 11 18 18 H 1.48496 * 109.47348 * 239.99901 * 15 13 11 19 19 C 1.39298 * 120.18840 * 359.71351 * 8 7 6 20 20 N 1.48012 * 119.94957 * 180.02562 * 19 8 7 21 21 O 1.21799 * 120.00141 * 173.82877 * 20 19 8 22 22 O 1.21799 * 120.00069 * 353.82735 * 20 19 8 23 23 C 1.36559 * 120.09987 * 359.97438 * 19 8 7 24 24 H 1.09000 * 109.47251 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47225 * 300.00460 * 1 2 3 26 26 H 1.09002 * 109.47144 * 59.99907 * 1 2 3 27 27 H 1.09002 * 109.46913 * 119.99592 * 2 1 3 28 28 H 1.08998 * 109.47225 * 239.99540 * 2 1 3 29 29 H 1.07991 * 120.04795 * 0.02562 * 6 5 3 30 30 H 1.08004 * 119.94798 * 180.29180 * 7 6 5 31 31 H 0.96995 * 119.99836 * 185.78083 * 9 8 7 32 32 H 1.08996 * 109.47601 * 299.99775 * 10 9 8 33 33 H 1.09000 * 109.46803 * 60.00263 * 10 9 8 34 34 H 0.96995 * 120.00342 * 180.02562 * 14 13 11 35 35 H 1.07994 * 120.05062 * 180.02562 * 23 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2440 2.3429 -0.0005 5 6 3.4751 1.6889 -0.0006 6 6 4.3875 0.6253 0.0048 7 6 5.7289 0.8794 -0.0021 8 6 6.1912 2.1938 -0.0021 9 7 7.5567 2.4476 -0.0027 10 6 8.5074 1.3404 -0.1309 11 6 9.9141 1.8806 -0.1043 12 1 10.0829 2.9424 -0.0025 13 6 10.9854 1.0193 -0.2110 14 7 10.7798 -0.2736 -0.3365 15 14 12.7289 1.6889 -0.1788 16 1 12.6893 3.1660 -0.0305 17 1 13.4656 1.0966 0.9666 18 1 13.4181 1.3364 -1.4460 19 6 5.2877 3.2540 -0.0012 20 7 5.7846 4.6483 -0.0018 21 8 5.0010 5.5740 -0.1143 22 8 6.9770 4.8699 0.1103 23 6 3.9443 3.0090 -0.0007 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 4.0300 -0.3937 0.0089 30 1 6.4328 0.0602 -0.0028 31 1 7.8808 3.3579 0.0819 32 1 8.3692 0.6450 0.6969 33 1 8.3356 0.8215 -1.0740 34 1 11.5335 -0.8796 -0.4112 35 1 3.2445 3.8316 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358914139.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:31 Heat of formation + Delta-G solvation = -39.308952 kcal Electronic energy + Delta-G solvation = -20878.153661 eV Core-core repulsion = 17457.571749 eV Total energy + Delta-G solvation = -3420.581911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.39504 -41.23614 -39.87358 -37.97677 -36.88209 -34.81920 -33.97181 -32.93043 -31.47428 -29.01400 -27.70089 -25.99992 -24.86813 -23.90502 -22.69899 -21.33931 -19.84332 -19.74434 -18.93355 -18.69539 -17.92010 -17.43661 -17.01619 -16.40390 -16.37119 -15.88157 -15.47895 -15.39458 -14.85139 -14.25816 -14.18003 -14.08547 -13.70038 -13.17115 -13.02110 -12.84009 -12.83265 -12.73167 -12.45603 -12.43278 -12.35145 -12.00326 -11.92731 -11.52407 -11.49598 -10.77721 -10.73163 -10.67420 -8.85087 -8.38007 -6.50323 -1.11167 -0.37527 0.32690 0.38975 1.33775 1.38690 1.41549 1.53236 2.20139 2.42179 2.48150 2.97563 2.98664 3.24471 3.72986 3.85767 3.89162 4.03677 4.27530 4.38317 4.48825 4.69389 4.74309 4.84860 4.99944 5.07515 5.09547 5.12791 5.15506 5.16227 5.35336 5.41558 5.51711 5.74648 6.01611 6.35503 6.54212 6.59569 6.73003 7.21166 8.72769 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.004245 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.863159 B = 6594.266258 C = 7837.146250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.165 4.165 3 C 0.408 3.592 4 O -0.501 6.501 5 C -0.246 4.246 6 C 0.051 3.949 7 C -0.216 4.216 8 C 0.296 3.704 9 N -0.684 5.684 10 C 0.250 3.750 11 C -0.568 4.568 12 H 0.061 0.939 13 C 0.024 3.976 14 N -0.913 5.913 15 Si 0.968 3.032 16 H -0.270 1.270 17 H -0.273 1.273 18 H -0.274 1.274 19 C -0.165 4.165 20 N 0.057 4.943 21 O -0.173 6.173 22 O -0.240 6.240 23 C 0.044 3.956 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.199 0.801 30 H 0.157 0.843 31 H 0.412 0.588 32 H 0.028 0.972 33 H 0.023 0.977 34 H 0.272 0.728 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 -5.111 0.727 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.202 4.202 3 C 0.290 3.710 4 O -0.380 6.380 5 C -0.251 4.251 6 C 0.031 3.969 7 C -0.239 4.239 8 C 0.172 3.828 9 N -0.312 5.312 10 C 0.129 3.871 11 C -0.605 4.605 12 H 0.079 0.921 13 C -0.178 4.178 14 N -0.551 5.551 15 Si 0.792 3.208 16 H -0.195 1.195 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.258 4.258 20 N 0.558 4.442 21 O -0.389 6.389 22 O -0.430 6.430 23 C 0.024 3.976 24 H 0.103 0.897 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.216 0.784 30 H 0.174 0.826 31 H 0.260 0.740 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.788 -5.483 0.705 16.728 hybrid contribution 1.589 1.450 0.006 2.151 sum -14.199 -4.033 0.712 14.778 Atomic orbital electron populations 1.21614 0.94123 1.02809 1.01766 1.22099 0.97912 0.92726 1.07415 1.22708 0.86054 0.92865 0.69389 1.90541 1.58819 1.49336 1.39264 1.20325 0.96781 0.91557 1.16433 1.21692 0.90021 1.01035 0.84104 1.20838 0.98271 0.92811 1.11939 1.18473 0.84313 0.93596 0.86381 1.46906 1.02554 1.14372 1.67373 1.19164 0.86497 0.84973 0.96504 1.21498 0.91347 0.94458 1.53234 0.92089 1.25666 1.03488 0.94957 0.93659 1.69988 1.33345 1.03032 1.48769 0.85349 0.78623 0.78645 0.78160 1.19464 1.19859 1.19984 1.20256 0.95204 0.78422 1.31887 1.43717 1.00101 1.03935 0.96460 1.94447 1.53171 1.37784 1.53458 1.94216 1.00435 1.90109 1.58200 1.20787 0.91082 0.99606 0.86124 0.89697 0.93541 0.93554 0.85245 0.85286 0.78391 0.82550 0.74039 0.95423 0.95917 0.91844 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.16 -1.69 5.02 29.85 0.15 -1.54 16 3 C 0.41 8.14 7.10 27.91 0.20 8.34 16 4 O -0.50 -13.91 15.96 -3.12 -0.05 -13.96 16 5 C -0.25 -5.45 5.87 -20.14 -0.12 -5.57 16 6 C 0.05 0.92 9.42 22.33 0.21 1.13 16 7 C -0.22 -5.75 9.24 22.13 0.20 -5.55 16 8 C 0.30 10.28 6.63 38.54 0.26 10.54 16 9 N -0.68 -28.49 5.58 -343.11 -1.91 -30.40 16 10 C 0.25 11.65 4.68 85.63 0.40 12.05 16 11 C -0.57 -29.68 9.28 25.60 0.24 -29.44 16 12 H 0.06 3.22 7.60 -2.91 -0.02 3.19 16 13 C 0.02 1.24 5.46 84.65 0.46 1.70 16 14 N -0.91 -48.70 13.29 21.45 0.28 -48.41 16 15 Si 0.97 41.17 29.54 68.60 2.03 43.20 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 C -0.17 -5.69 6.82 36.24 0.25 -5.44 16 20 N 0.06 2.22 4.45 -46.79 -0.21 2.01 16 21 O -0.17 -6.62 18.44 18.89 0.35 -6.27 16 22 O -0.24 -10.18 15.70 18.89 0.30 -9.88 16 23 C 0.04 1.27 9.05 22.33 0.20 1.47 16 24 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.10 -2.39 -0.02 0.68 16 27 H 0.13 0.67 8.08 -2.39 -0.02 0.65 16 28 H 0.13 0.68 8.09 -2.39 -0.02 0.66 16 29 H 0.20 1.41 7.03 -2.92 -0.02 1.39 16 30 H 0.16 4.19 6.69 -2.91 -0.02 4.17 16 31 H 0.41 18.12 4.73 -100.84 -0.48 17.64 16 32 H 0.03 1.32 7.71 -2.39 -0.02 1.31 16 33 H 0.02 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 35 H 0.15 4.42 7.17 -2.91 -0.02 4.40 16 Total: -1.00 -64.34 309.91 4.55 -59.79 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.66 Total: 17.37 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 3.11 Total: -13.45 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -1.84 Total: -76.80 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: 0.59 Total: -30.11 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -64.34 4.55 -59.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358914139.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.481 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds