Wall clock time and date at job start Tue Mar 31 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46865 * 2 1 4 4 C 1.50696 * 109.47413 * 240.00192 * 2 1 3 5 5 H 1.08000 * 120.00450 * 240.00374 * 4 2 1 6 6 C 1.37878 * 119.99822 * 59.99475 * 4 2 1 7 7 N 1.31517 * 120.00331 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47467 * 270.00055 * 8 6 4 10 10 H 1.48496 * 109.47181 * 30.00621 * 8 6 4 11 11 H 1.48506 * 109.46829 * 150.00324 * 8 6 4 12 12 N 1.46492 * 109.47220 * 119.99698 * 2 1 3 13 13 C 1.34771 * 120.00465 * 275.00336 * 12 2 1 14 14 O 1.21594 * 119.99972 * 359.97438 * 13 12 2 15 15 N 1.34778 * 120.00171 * 179.97438 * 13 12 2 16 16 C 1.40186 * 120.00060 * 175.54351 * 15 13 12 17 17 C 1.38825 * 120.03946 * 34.64505 * 16 15 13 18 18 C 1.38176 * 120.05828 * 180.02562 * 17 16 15 19 19 C 1.38253 * 120.19891 * 0.02562 * 18 17 16 20 20 C 1.38652 * 120.16054 * 359.97438 * 19 18 17 21 21 C 1.39061 * 120.04502 * 214.36897 * 16 15 13 22 22 O 1.36588 * 131.52989 * 0.66802 * 21 16 15 23 23 C 1.43988 * 105.53338 * 162.25653 * 22 21 16 24 24 O 1.36521 * 131.47660 * 180.02562 * 20 19 18 25 25 H 1.08997 * 109.46560 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46877 * 299.99811 * 1 2 3 27 27 H 1.09005 * 109.46969 * 59.99750 * 1 2 3 28 28 H 0.96996 * 120.00049 * 179.97438 * 7 6 4 29 29 H 0.97006 * 119.99874 * 95.00433 * 12 2 1 30 30 H 0.96992 * 120.00147 * 355.55033 * 15 13 12 31 31 H 1.07994 * 119.97301 * 0.02562 * 17 16 15 32 32 H 1.08003 * 119.90020 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.92106 * 179.97438 * 19 18 17 34 34 H 1.09009 * 110.57487 * 268.28687 * 23 22 21 35 35 H 1.08999 * 110.70718 * 145.46502 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.6298 -0.5458 -4.4124 10 1 2.4859 -2.5661 -3.7120 11 1 1.3432 -0.9492 -5.1121 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1617 2.4116 15 7 2.5959 -0.6537 3.4577 16 6 2.8186 0.0653 4.6403 17 6 1.9954 1.1335 4.9698 18 6 2.2150 1.8427 6.1351 19 6 3.2543 1.4926 6.9769 20 6 4.0818 0.4273 6.6564 21 6 3.8609 -0.2942 5.4878 22 8 4.8025 -1.2796 5.3978 23 6 5.8424 -0.9047 6.3205 24 8 5.1557 -0.1106 7.3053 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7094 1.1618 -3.4844 29 1 2.2491 -1.6317 1.1526 30 1 2.7648 -1.6084 3.4314 31 1 1.1827 1.4104 4.3147 32 1 1.5732 2.6736 6.3887 33 1 3.4221 2.0504 7.8865 34 1 6.6060 -0.3119 5.8167 35 1 6.2860 -1.7875 6.7807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360383669.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:04:57 Heat of formation + Delta-G solvation = -79.984832 kcal Electronic energy + Delta-G solvation = -21176.560638 eV Core-core repulsion = 17754.214888 eV Total energy + Delta-G solvation = -3422.345750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -43.16675 -41.35144 -38.83006 -37.37379 -36.77798 -35.52015 -34.31456 -31.30536 -30.92624 -29.63127 -27.32868 -26.73104 -24.57456 -23.94682 -22.77318 -21.62502 -20.06777 -19.35847 -18.86361 -18.46607 -17.80954 -17.31335 -17.05318 -16.52881 -16.33359 -15.67776 -15.58406 -15.23274 -15.09491 -14.51531 -14.39297 -13.98960 -13.83705 -13.71578 -13.24182 -12.98367 -12.89682 -12.74572 -12.67075 -12.26423 -12.13079 -12.02443 -11.40268 -11.10538 -11.03251 -10.59646 -9.87899 -9.17430 -9.01792 -8.17456 -6.34526 0.11432 0.16877 1.45598 1.46330 1.56405 1.66263 1.75381 2.11296 2.42008 2.50124 2.68711 3.13224 3.32705 3.63633 3.84565 3.97393 4.16372 4.23106 4.35391 4.43472 4.62608 4.76099 4.94767 4.99844 5.09777 5.21654 5.35204 5.38345 5.44691 5.58035 5.59427 5.64830 5.83214 6.09348 6.13844 6.18897 6.72445 7.15537 7.33570 7.61465 8.89076 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031081 B = 0.003841 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.658026 B = 7288.436574 C = 7944.484664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H 0.002 0.998 4 C -0.548 4.548 5 H 0.072 0.928 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.279 1.279 10 H -0.261 1.261 11 H -0.283 1.283 12 N -0.713 5.713 13 C 0.696 3.304 14 O -0.618 6.618 15 N -0.678 5.678 16 C 0.177 3.823 17 C -0.133 4.133 18 C -0.080 4.080 19 C -0.114 4.114 20 C 0.040 3.960 21 C -0.019 4.019 22 O -0.324 6.324 23 C 0.206 3.794 24 O -0.316 6.316 25 H 0.039 0.961 26 H 0.015 0.985 27 H 0.068 0.932 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.418 0.582 31 H 0.135 0.865 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.096 0.904 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.767 -4.087 18.557 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.184 3.816 3 H 0.020 0.980 4 C -0.586 4.586 5 H 0.090 0.910 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.204 1.204 10 H -0.185 1.185 11 H -0.209 1.209 12 N -0.365 5.365 13 C 0.396 3.604 14 O -0.498 6.498 15 N -0.327 5.327 16 C 0.081 3.919 17 C -0.154 4.154 18 C -0.098 4.098 19 C -0.134 4.134 20 C -0.005 4.005 21 C -0.066 4.066 22 O -0.241 6.241 23 C 0.096 3.904 24 O -0.232 6.232 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.237 0.763 30 H 0.255 0.745 31 H 0.153 0.847 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.113 0.887 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.516 -3.135 18.435 19.803 hybrid contribution 0.527 -1.172 -1.162 1.733 sum 7.042 -4.307 17.273 19.144 Atomic orbital electron populations 1.21917 0.98100 0.99500 0.99761 1.18304 0.91110 0.91738 0.80427 0.97991 1.21518 1.32720 1.13663 0.90720 0.90966 1.25765 0.94824 0.95595 1.02185 1.70045 1.36830 1.23827 1.24678 0.85337 0.77756 0.79132 0.78043 1.20443 1.18484 1.20850 1.45484 1.68732 1.14015 1.08296 1.16158 0.78459 0.84924 0.80813 1.90839 1.58108 1.15990 1.84884 1.42473 1.69813 1.12114 1.08283 1.16768 0.94102 0.95865 0.85156 1.21288 0.99823 0.96015 0.98263 1.21180 0.96964 0.99770 0.91911 1.20419 0.95079 0.95024 1.02840 1.19800 0.92815 0.96939 0.90970 1.19465 0.95178 0.93418 0.98497 1.87303 1.31133 1.42593 1.63039 1.26051 0.88005 0.96329 0.80032 1.87312 1.37724 1.62869 1.35296 0.94149 0.96628 0.91310 0.92468 0.76250 0.74454 0.84711 0.81115 0.81664 0.88682 0.81724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.29 14.91 2.56 44.25 0.11 15.03 16 3 H 0.00 0.13 7.58 -2.38 -0.02 0.11 16 4 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.07 11.32 21.45 0.24 -51.83 16 8 Si 0.97 41.73 29.54 68.60 2.03 43.76 16 9 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 12 N -0.71 -30.03 5.07 -461.42 -2.34 -32.37 16 13 C 0.70 28.95 8.38 179.06 1.50 30.45 16 14 O -0.62 -30.29 13.42 -4.01 -0.05 -30.34 16 15 N -0.68 -22.27 5.36 -316.86 -1.70 -23.97 16 16 C 0.18 5.64 6.32 38.14 0.24 5.88 16 17 C -0.13 -4.09 8.70 22.40 0.19 -3.90 16 18 C -0.08 -1.80 10.03 22.26 0.22 -1.57 16 19 C -0.11 -2.39 10.06 22.37 0.22 -2.16 16 20 C 0.04 0.99 7.15 22.58 0.16 1.15 16 21 C -0.02 -0.53 7.07 22.67 0.16 -0.37 16 22 O -0.32 -8.19 11.40 -77.08 -0.88 -9.07 16 23 C 0.21 3.57 8.89 113.37 1.01 4.58 16 24 O -0.32 -6.96 11.40 -76.30 -0.87 -7.83 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 3.78 6.07 -2.38 -0.01 3.77 16 28 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.40 14.26 8.56 -92.70 -0.79 13.47 16 30 H 0.42 11.25 8.84 -92.71 -0.82 10.43 16 31 H 0.14 4.80 6.19 -2.91 -0.02 4.78 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.32 303.24 1.13 -68.19 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: -0.46 Total: 27.78 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 5.17 Total: 15.69 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.79 Total: -108.17 kcal Atomic # 8 Polarization: -45.43 SS G_CDS: -1.80 Total: -47.24 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -69.32 1.13 -68.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383669.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.798 kcal (2) G-P(sol) polarization free energy of solvation -69.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds