Wall clock time and date at job start Tue Mar 31 2020 01:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47101 * 2 1 4 4 C 1.50706 * 109.47240 * 119.99755 * 2 1 3 5 5 H 1.07993 * 120.00161 * 119.99967 * 4 2 1 6 6 C 1.37880 * 119.99521 * 300.00231 * 4 2 1 7 7 N 1.31509 * 120.00188 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99450 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47470 * 60.00095 * 8 6 4 10 10 H 1.48501 * 109.46852 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47240 * 299.99669 * 8 6 4 12 12 N 1.46504 * 109.47235 * 239.99751 * 2 1 3 13 13 C 1.34770 * 120.00020 * 84.72174 * 12 2 1 14 14 O 1.21591 * 119.99999 * 0.27850 * 13 12 2 15 15 N 1.34777 * 120.00067 * 180.27614 * 13 12 2 16 16 C 1.40175 * 119.99926 * 175.54971 * 15 13 12 17 17 C 1.38822 * 120.04730 * 34.64187 * 16 15 13 18 18 C 1.38173 * 120.05940 * 179.97438 * 17 16 15 19 19 C 1.38251 * 120.20265 * 359.97438 * 18 17 16 20 20 C 1.38656 * 120.15800 * 359.97438 * 19 18 17 21 21 C 1.39073 * 120.04090 * 214.36449 * 16 15 13 22 22 O 1.36577 * 131.52922 * 0.63143 * 21 16 15 23 23 C 1.43990 * 105.52760 * 162.31558 * 22 21 16 24 24 O 1.36521 * 131.47441 * 180.02562 * 20 19 18 25 25 H 1.08995 * 109.47177 * 60.00416 * 1 2 3 26 26 H 1.08999 * 109.46680 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46943 * 300.00316 * 1 2 3 28 28 H 0.97004 * 120.00203 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99548 * 265.00351 * 12 2 1 30 30 H 0.96995 * 119.99712 * 355.54540 * 15 13 12 31 31 H 1.07994 * 119.97084 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.89372 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.92476 * 179.97438 * 19 18 17 34 34 H 1.09005 * 110.58163 * 268.30890 * 23 22 21 35 35 H 1.09011 * 110.70544 * 145.48308 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8269 -0.4196 5.2204 11 1 1.8258 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1962 13 6 2.1418 -0.0198 -2.3585 14 8 1.8526 1.1600 -2.4132 15 7 2.5858 -0.6565 -3.4603 16 6 2.6259 0.0154 -4.6898 17 6 2.9219 1.3711 -4.7317 18 6 2.9620 2.0335 -5.9436 19 6 2.7083 1.3503 -7.1185 20 6 2.4128 -0.0040 -7.0868 21 6 2.3747 -0.6764 -5.8698 22 8 2.0597 -1.9847 -6.1029 23 6 1.5122 -2.0181 -7.4342 24 8 2.1301 -0.8913 -8.0850 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1620 3.4843 29 1 2.2490 -1.6318 -1.1525 30 1 2.8776 -1.5797 -3.4023 31 1 3.1211 1.9083 -3.8164 32 1 3.1922 3.0884 -5.9731 33 1 2.7405 1.8727 -8.0632 34 1 0.4289 -1.8997 -7.4061 35 1 1.7820 -2.9460 -7.9388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360383670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:02 Heat of formation + Delta-G solvation = -57.597285 kcal Electronic energy + Delta-G solvation = -21176.000438 eV Core-core repulsion = 17754.625485 eV Total energy + Delta-G solvation = -3421.374953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.18925 -39.85781 -37.61865 -36.36973 -35.02648 -34.07981 -32.42024 -29.92698 -29.72242 -28.12771 -25.89702 -25.27013 -23.28226 -22.84032 -21.20885 -19.90938 -18.58861 -18.19874 -17.70638 -17.39579 -16.31061 -16.09688 -15.59796 -14.88340 -14.80087 -14.50564 -14.21954 -14.12356 -13.59061 -13.14625 -13.01650 -12.87192 -12.41439 -12.17843 -11.83720 -11.61814 -11.15206 -11.09793 -10.96215 -10.75807 -10.36624 -10.24722 -10.09387 -9.42232 -9.07729 -8.58804 -8.18717 -8.09709 -7.76326 -6.14353 -4.23746 1.16217 1.25467 2.68833 3.06761 3.24783 3.30214 3.32016 3.35945 3.53068 3.92032 4.30449 4.56132 4.60802 4.73941 4.87579 5.11035 5.13723 5.18495 5.35574 5.40477 5.71936 6.03320 6.21956 6.38079 6.53397 6.73866 6.77645 6.95890 7.08102 7.17231 7.20943 7.42152 7.59835 7.79990 7.96053 8.12811 8.69103 8.80786 9.18021 9.44287 10.91658 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.003689 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.445715 B = 7587.453831 C = 7963.858116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.051 0.949 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.695 3.305 14 O -0.581 6.581 15 N -0.693 5.693 16 C 0.208 3.792 17 C -0.114 4.114 18 C -0.090 4.090 19 C -0.126 4.126 20 C 0.046 3.954 21 C -0.013 4.013 22 O -0.310 6.310 23 C 0.216 3.784 24 O -0.312 6.312 25 H 0.015 0.985 26 H 0.026 0.974 27 H 0.091 0.909 28 H 0.265 0.735 29 H 0.387 0.613 30 H 0.406 0.594 31 H 0.160 0.840 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.081 0.919 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -3.676 -17.899 18.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.367 5.367 13 C 0.395 3.605 14 O -0.459 6.459 15 N -0.342 5.342 16 C 0.111 3.889 17 C -0.134 4.134 18 C -0.109 4.109 19 C -0.146 4.146 20 C 0.001 3.999 21 C -0.060 4.060 22 O -0.226 6.226 23 C 0.104 3.896 24 O -0.228 6.228 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.219 0.781 30 H 0.241 0.759 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.399 -2.685 -17.735 18.096 hybrid contribution 0.319 -1.704 0.757 1.892 sum 2.718 -4.390 -16.978 17.746 Atomic orbital electron populations 1.22108 0.98499 0.99134 1.00970 1.18710 0.90887 0.93782 0.78761 0.93138 1.21166 1.32647 1.13338 0.90232 0.92099 1.24871 0.94776 0.94956 0.99014 1.69890 1.35712 1.22346 1.24062 0.86485 0.79160 0.79563 0.81743 1.20166 1.21102 1.20175 1.45880 1.68372 1.13439 1.09048 1.16120 0.78574 0.85490 0.80321 1.90862 1.57064 1.14001 1.84008 1.42819 1.68649 1.16483 1.06205 1.16570 0.99804 0.91285 0.81242 1.21348 0.99959 0.92136 0.99987 1.20861 0.99235 1.00201 0.90560 1.20017 1.05600 0.89140 0.99800 1.19500 1.03629 0.91960 0.84770 1.19433 1.08651 0.83655 0.94218 1.87324 1.79407 1.22631 1.33255 1.25541 0.96658 0.90571 0.76842 1.87346 1.77031 1.27940 1.30489 0.96557 0.95516 0.89049 0.92459 0.78066 0.75914 0.82257 0.84188 0.84989 0.90126 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.07 2.56 -69.08 -0.18 6.89 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.54 -14.01 8.73 -34.44 -0.30 -14.31 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.72 -14.86 5.07 -59.81 -0.30 -15.16 16 13 C 0.69 14.07 8.37 -86.92 -0.73 13.34 16 14 O -0.58 -13.65 13.42 5.29 0.07 -13.58 16 15 N -0.69 -11.27 5.36 -14.13 -0.08 -11.35 16 16 C 0.21 3.31 6.32 -83.52 -0.53 2.78 16 17 C -0.11 -1.74 8.70 -39.39 -0.34 -2.08 16 18 C -0.09 -1.09 10.03 -39.60 -0.40 -1.49 16 19 C -0.13 -1.49 10.06 -39.42 -0.40 -1.88 16 20 C 0.05 0.62 7.14 -39.11 -0.28 0.34 16 21 C -0.01 -0.19 7.07 -38.96 -0.28 -0.46 16 22 O -0.31 -4.11 11.40 -45.94 -0.52 -4.64 16 23 C 0.22 2.12 8.90 101.05 0.90 3.02 16 24 O -0.31 -3.82 11.41 -45.76 -0.52 -4.35 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 6.91 8.56 -40.82 -0.35 6.56 16 30 H 0.41 5.51 8.84 -40.82 -0.36 5.15 16 31 H 0.16 2.73 6.19 -52.49 -0.32 2.40 16 32 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 303.24 15.07 4.57 4.57 Total: -1.00 -31.31 303.24 -7.27 -38.59 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -3.82 Total: 9.98 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.28 Total: 4.50 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.25 Total: -50.47 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.97 Total: -22.56 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.31 -7.27 -38.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.012 kcal (2) G-P(sol) polarization free energy of solvation -31.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds