Wall clock time and date at job start Tue Mar 31 2020 01:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.47101 * 2 1 4 4 C 1.50706 * 109.47240 * 119.99755 * 2 1 3 5 5 H 1.07993 * 120.00161 * 119.99967 * 4 2 1 6 6 C 1.37880 * 119.99521 * 300.00231 * 4 2 1 7 7 N 1.31509 * 120.00188 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99450 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47470 * 60.00095 * 8 6 4 10 10 H 1.48501 * 109.46852 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47240 * 299.99669 * 8 6 4 12 12 N 1.46504 * 109.47235 * 239.99751 * 2 1 3 13 13 C 1.34770 * 120.00020 * 84.72174 * 12 2 1 14 14 O 1.21591 * 119.99999 * 0.27850 * 13 12 2 15 15 N 1.34777 * 120.00067 * 180.27614 * 13 12 2 16 16 C 1.40175 * 119.99926 * 175.54971 * 15 13 12 17 17 C 1.38822 * 120.04730 * 34.64187 * 16 15 13 18 18 C 1.38173 * 120.05940 * 179.97438 * 17 16 15 19 19 C 1.38251 * 120.20265 * 359.97438 * 18 17 16 20 20 C 1.38656 * 120.15800 * 359.97438 * 19 18 17 21 21 C 1.39073 * 120.04090 * 214.36449 * 16 15 13 22 22 O 1.36577 * 131.52922 * 0.63143 * 21 16 15 23 23 C 1.43990 * 105.52760 * 162.31558 * 22 21 16 24 24 O 1.36521 * 131.47441 * 180.02562 * 20 19 18 25 25 H 1.08995 * 109.47177 * 60.00416 * 1 2 3 26 26 H 1.08999 * 109.46680 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46943 * 300.00316 * 1 2 3 28 28 H 0.97004 * 120.00203 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99548 * 265.00351 * 12 2 1 30 30 H 0.96995 * 119.99712 * 355.54540 * 15 13 12 31 31 H 1.07994 * 119.97084 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.89372 * 179.97438 * 18 17 16 33 33 H 1.08002 * 119.92476 * 179.97438 * 19 18 17 34 34 H 1.09005 * 110.58163 * 268.30890 * 23 22 21 35 35 H 1.09011 * 110.70544 * 145.48308 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3213 -1.1201 4.0080 9 1 3.8063 -1.1207 4.0083 10 1 1.8269 -0.4196 5.2204 11 1 1.8258 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1962 13 6 2.1418 -0.0198 -2.3585 14 8 1.8526 1.1600 -2.4132 15 7 2.5858 -0.6565 -3.4603 16 6 2.6259 0.0154 -4.6898 17 6 2.9219 1.3711 -4.7317 18 6 2.9620 2.0335 -5.9436 19 6 2.7083 1.3503 -7.1185 20 6 2.4128 -0.0040 -7.0868 21 6 2.3747 -0.6764 -5.8698 22 8 2.0597 -1.9847 -6.1029 23 6 1.5122 -2.0181 -7.4342 24 8 2.1301 -0.8913 -8.0850 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.7094 1.1620 3.4843 29 1 2.2490 -1.6318 -1.1525 30 1 2.8776 -1.5797 -3.4023 31 1 3.1211 1.9083 -3.8164 32 1 3.1922 3.0884 -5.9731 33 1 2.7405 1.8727 -8.0632 34 1 0.4289 -1.8997 -7.4061 35 1 1.7820 -2.9460 -7.9388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360383670.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:01 Heat of formation + Delta-G solvation = -79.856970 kcal Electronic energy + Delta-G solvation = -21176.965690 eV Core-core repulsion = 17754.625485 eV Total energy + Delta-G solvation = -3422.340205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -43.16169 -41.35185 -38.82946 -37.37063 -36.77782 -35.52079 -34.31298 -31.30765 -30.92318 -29.63583 -27.33022 -26.72807 -24.56812 -23.95013 -22.78463 -21.61584 -20.06697 -19.36619 -18.85067 -18.45275 -17.83067 -17.32209 -17.07170 -16.48328 -16.25838 -15.78070 -15.57229 -15.22264 -15.12572 -14.49185 -14.33456 -14.00511 -13.90800 -13.68191 -13.24488 -12.98777 -12.89560 -12.72934 -12.66974 -12.27140 -12.14238 -12.03227 -11.40155 -11.11211 -11.03252 -10.59457 -9.87671 -9.17817 -9.01819 -8.16828 -6.34141 0.11430 0.16796 1.46226 1.48493 1.55791 1.66247 1.75404 2.10978 2.42669 2.50257 2.68405 3.13714 3.32701 3.63750 3.84362 3.97460 4.16370 4.23176 4.35398 4.43695 4.62548 4.74794 4.92956 4.99487 5.09080 5.21766 5.35149 5.37403 5.44634 5.57909 5.59450 5.64007 5.82618 6.08565 6.13739 6.18860 6.72574 7.15509 7.33919 7.61448 8.89471 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.035777 B = 0.003689 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.445715 B = 7587.453831 C = 7963.858116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.973 3.027 9 H -0.271 1.271 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.713 5.713 13 C 0.696 3.304 14 O -0.618 6.618 15 N -0.678 5.678 16 C 0.177 3.823 17 C -0.134 4.134 18 C -0.080 4.080 19 C -0.114 4.114 20 C 0.040 3.960 21 C -0.018 4.018 22 O -0.323 6.323 23 C 0.206 3.794 24 O -0.316 6.316 25 H 0.011 0.989 26 H 0.038 0.962 27 H 0.069 0.931 28 H 0.266 0.734 29 H 0.403 0.597 30 H 0.418 0.582 31 H 0.134 0.866 32 H 0.171 0.829 33 H 0.166 0.834 34 H 0.097 0.903 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.231 -5.027 -19.451 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.023 0.977 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.554 5.554 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.190 1.190 12 N -0.365 5.365 13 C 0.396 3.604 14 O -0.498 6.498 15 N -0.327 5.327 16 C 0.081 3.919 17 C -0.155 4.155 18 C -0.098 4.098 19 C -0.134 4.134 20 C -0.005 4.005 21 C -0.065 4.065 22 O -0.240 6.240 23 C 0.096 3.904 24 O -0.232 6.232 25 H 0.030 0.970 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.256 0.744 31 H 0.152 0.848 32 H 0.188 0.812 33 H 0.183 0.817 34 H 0.114 0.886 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.900 -4.092 -19.348 19.988 hybrid contribution 0.163 -1.269 1.063 1.663 sum 3.063 -5.360 -18.285 19.299 Atomic orbital electron populations 1.21927 0.98403 0.99372 0.99617 1.18298 0.90889 0.91874 0.80445 0.97745 1.21489 1.32816 1.13710 0.90664 0.90869 1.25767 0.94821 0.95568 1.02199 1.70038 1.36814 1.23793 1.24749 0.85383 0.78623 0.78647 0.77577 1.19609 1.21138 1.18983 1.45485 1.68726 1.14020 1.08301 1.16159 0.78302 0.85031 0.80875 1.90839 1.58535 1.15716 1.84728 1.42472 1.67886 1.16851 1.05466 1.16759 1.02037 0.91863 0.81207 1.21286 1.01511 0.92245 1.00420 1.21173 0.97709 1.01530 0.89417 1.20416 1.03382 0.88662 1.00892 1.19791 1.03400 0.92698 0.84613 1.19450 1.08500 0.84411 0.94118 1.87300 1.79672 1.21947 1.35110 1.26079 0.97462 0.91363 0.75522 1.87337 1.77209 1.28297 1.30380 0.96988 0.94285 0.91228 0.92463 0.76243 0.74447 0.84822 0.81168 0.81664 0.88554 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.85 9.26 71.98 0.67 -6.18 16 2 C 0.29 14.96 2.56 44.25 0.11 15.07 16 3 H 0.00 0.28 7.58 -2.38 -0.02 0.26 16 4 C -0.55 -28.82 8.73 25.60 0.22 -28.60 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.80 16 8 Si 0.97 41.59 29.54 68.60 2.03 43.62 16 9 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 10 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 12 N -0.71 -30.05 5.07 -461.39 -2.34 -32.39 16 13 C 0.70 28.97 8.37 179.06 1.50 30.47 16 14 O -0.62 -30.32 13.42 -4.00 -0.05 -30.37 16 15 N -0.68 -22.28 5.36 -316.87 -1.70 -23.98 16 16 C 0.18 5.65 6.32 38.15 0.24 5.89 16 17 C -0.13 -4.14 8.70 22.39 0.19 -3.95 16 18 C -0.08 -1.81 10.03 22.26 0.22 -1.58 16 19 C -0.11 -2.38 10.06 22.37 0.22 -2.16 16 20 C 0.04 0.99 7.14 22.57 0.16 1.15 16 21 C -0.02 -0.51 7.07 22.68 0.16 -0.35 16 22 O -0.32 -8.06 11.40 -76.95 -0.88 -8.94 16 23 C 0.21 3.49 8.90 113.37 1.01 4.50 16 24 O -0.32 -6.90 11.41 -76.29 -0.87 -7.77 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 28 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.40 14.25 8.56 -92.71 -0.79 13.46 16 30 H 0.42 11.26 8.84 -92.71 -0.82 10.44 16 31 H 0.13 4.83 6.19 -2.91 -0.02 4.81 16 32 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 33 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.17 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -69.15 303.24 1.13 -68.02 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: -0.46 Total: 28.00 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 5.17 Total: 15.61 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -3.80 Total: -108.16 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -1.80 Total: -47.08 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -69.15 1.13 -68.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383670.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.838 kcal (2) G-P(sol) polarization free energy of solvation -69.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds