Wall clock time and date at job start Tue Mar 31 2020 01:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.53948 * 113.74054 * 248.74535 * 3 2 1 5 5 N 1.47816 * 86.03071 * 222.08331 * 4 3 2 6 6 S 1.65607 * 134.45258 * 204.64052 * 5 4 3 7 7 O 1.42108 * 106.39995 * 23.41261 * 6 5 4 8 8 O 1.42095 * 106.39953 * 156.32738 * 6 5 4 9 9 N 1.65593 * 107.21834 * 269.86820 * 6 5 4 10 10 C 1.46503 * 119.99821 * 90.00252 * 9 6 5 11 11 C 1.46504 * 120.00377 * 270.00049 * 9 6 5 12 12 H 1.09002 * 109.46722 * 0.02562 * 11 9 6 13 13 C 1.53000 * 109.47256 * 240.00218 * 11 9 6 14 14 C 1.50691 * 109.46948 * 120.00130 * 11 9 6 15 15 H 1.07992 * 120.00684 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99502 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00115 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99873 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47181 * 89.99570 * 18 16 14 20 20 H 1.48494 * 109.47209 * 209.99782 * 18 16 14 21 21 H 1.48508 * 109.46927 * 329.99805 * 18 16 14 22 22 C 1.47573 * 91.05389 * 24.55143 * 5 4 3 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.08994 * 112.94198 * 20.33372 * 3 2 1 27 27 H 1.09004 * 113.76610 * 336.34244 * 4 3 2 28 28 H 1.09001 * 113.76922 * 107.74687 * 4 3 2 29 29 H 1.08998 * 109.47402 * 89.99972 * 10 9 6 30 30 H 1.09000 * 109.47236 * 209.99619 * 10 9 6 31 31 H 1.09000 * 109.47533 * 330.00001 * 10 9 6 32 32 H 1.09000 * 109.47066 * 300.00550 * 13 11 9 33 33 H 1.09002 * 109.46860 * 59.99290 * 13 11 9 34 34 H 1.08999 * 109.47221 * 179.97438 * 13 11 9 35 35 H 0.96999 * 119.99355 * 180.02562 * 17 16 14 36 36 H 1.09005 * 113.76816 * 221.15233 * 22 5 4 37 37 H 1.09000 * 113.77248 * 89.75596 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7291 1.6638 -1.3134 5 7 3.7844 2.2455 -0.4572 6 16 4.9360 3.4164 -0.6697 7 8 4.4682 4.2535 -1.7185 8 8 5.2590 3.9014 0.6263 9 7 6.2974 2.6670 -1.2414 10 6 6.4983 2.5142 -2.6845 11 6 7.3011 2.1567 -0.3041 12 1 6.9807 2.3602 0.7177 13 6 8.6412 2.8471 -0.5660 14 6 7.4564 0.6699 -0.4947 15 1 6.8669 0.1565 -1.2397 16 6 8.3513 -0.0349 0.2822 17 7 9.0697 0.5904 1.1891 18 14 8.5444 -1.8778 0.0455 19 1 9.5988 -2.1391 -0.9670 20 1 8.9302 -2.5048 1.3351 21 1 7.2574 -2.4546 -0.4199 22 6 3.3983 1.3658 0.6631 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.3233 2.0764 0.3488 27 1 3.0566 0.7960 -1.8859 28 1 2.1980 2.3986 -1.9185 29 1 7.0344 3.3811 -3.0706 30 1 7.0794 1.6124 -2.8771 31 1 5.5305 2.4354 -3.1798 32 1 8.9613 2.6434 -1.5878 33 1 8.5287 3.9225 -0.4282 34 1 9.3878 2.4678 0.1317 35 1 9.6994 0.0945 1.7353 36 1 3.4005 1.8632 1.6331 37 1 3.9228 0.4104 0.6724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:24 Heat of formation + Delta-G solvation = -77.427283 kcal Electronic energy + Delta-G solvation = -21153.691345 eV Core-core repulsion = 17866.900450 eV Total energy + Delta-G solvation = -3286.790895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.42182 -36.67061 -36.38408 -36.11598 -35.25702 -32.59335 -29.08016 -28.15279 -26.24646 -25.95954 -25.45759 -25.17586 -21.11396 -20.65390 -18.30154 -17.32489 -17.16294 -16.60514 -16.41201 -15.76589 -15.15027 -14.94332 -14.62830 -13.91160 -13.70503 -13.30189 -13.12674 -12.80635 -12.52051 -12.40466 -11.97935 -11.79894 -11.60924 -11.50498 -11.39161 -11.23470 -11.21541 -11.04139 -10.96638 -10.84291 -10.43014 -10.22507 -10.07701 -9.60144 -9.33076 -8.82399 -8.48453 -7.94712 -6.09341 -4.17925 1.14387 3.25105 3.30439 3.33002 3.37164 3.73344 4.12633 4.35561 4.41879 4.74014 4.84826 4.92793 5.21125 5.23886 5.25718 5.49237 5.54309 5.63595 5.72790 5.80489 6.02391 6.11829 6.18010 6.32443 6.62397 6.69129 6.88695 6.89851 7.11893 7.11941 7.49005 7.62560 7.78090 8.04970 8.26052 8.85292 9.48511 10.95658 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.007579 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.990303 B = 3693.615964 C = 4882.475059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.052 3.948 4 C 0.109 3.891 5 N -1.039 6.039 6 S 2.798 3.202 7 O -0.993 6.993 8 O -0.974 6.974 9 N -0.990 5.990 10 C 0.108 3.892 11 C 0.267 3.733 12 H 0.058 0.942 13 C -0.144 4.144 14 C -0.526 4.526 15 H 0.062 0.938 16 C 0.064 3.936 17 N -0.887 5.887 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.134 3.866 23 H 0.084 0.916 24 H 0.041 0.959 25 H 0.042 0.958 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.048 0.952 32 H 0.032 0.968 33 H 0.012 0.988 34 H 0.093 0.907 35 H 0.264 0.736 36 H 0.087 0.913 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 -0.196 -3.622 13.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.008 4.008 4 C -0.017 4.017 5 N -0.880 5.880 6 S 2.809 3.191 7 O -0.977 6.977 8 O -0.959 6.959 9 N -0.833 5.833 10 C -0.039 4.039 11 C 0.164 3.836 12 H 0.076 0.924 13 C -0.204 4.204 14 C -0.565 4.565 15 H 0.081 0.919 16 C -0.138 4.138 17 N -0.525 5.525 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C 0.008 3.992 23 H 0.103 0.897 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.031 0.969 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.114 0.698 -3.327 13.547 hybrid contribution 0.195 -1.246 -0.279 1.292 sum -12.919 -0.548 -3.606 13.424 Atomic orbital electron populations 1.22802 0.81258 1.02718 0.99945 1.87991 1.19570 1.27113 1.94475 1.24463 0.94414 0.85273 0.96682 1.23220 0.86303 0.97719 0.94449 1.60733 1.49057 1.54461 1.23714 1.01371 0.71712 0.73036 0.72932 1.93533 1.81547 1.64431 1.58212 1.93576 1.83431 1.78176 1.40681 1.57826 1.36012 1.75846 1.13581 1.21162 1.00454 1.02200 0.80043 1.18736 0.84161 0.93197 0.87531 0.92432 1.22050 1.01048 0.96103 1.01168 1.21371 1.22783 0.92106 1.20239 0.91940 1.24929 0.95418 0.98549 0.94929 1.69884 1.24929 1.35778 1.21917 0.86531 0.78455 0.85081 0.77522 1.20699 1.21169 1.19832 1.22863 0.91025 0.94734 0.90533 0.89707 0.94008 0.93970 0.88614 0.89220 0.90043 0.93896 0.90232 0.93364 0.94882 0.96923 0.88894 0.92639 0.89468 0.88374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.86 101.05 1.10 1.35 16 2 O -0.37 -4.62 10.73 -35.23 -0.38 -5.00 16 3 C 0.05 0.64 4.48 -25.81 -0.12 0.53 16 4 C 0.11 1.47 8.82 -2.84 -0.03 1.45 16 5 N -1.04 -17.61 4.18 -118.83 -0.50 -18.11 16 6 S 2.80 57.10 6.60 -107.50 -0.71 56.40 16 7 O -0.99 -20.91 17.18 -57.17 -0.98 -21.90 16 8 O -0.97 -22.78 16.67 -57.17 -0.95 -23.74 16 9 N -0.99 -21.19 3.12 -115.85 -0.36 -21.55 16 10 C 0.11 1.99 9.28 59.85 0.56 2.54 16 11 C 0.27 6.62 2.62 -69.08 -0.18 6.44 16 12 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 13 C -0.14 -3.49 8.97 37.16 0.33 -3.15 16 14 C -0.53 -13.58 7.99 -34.44 -0.28 -13.86 16 15 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -24.46 11.32 55.43 0.63 -23.83 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.13 2.04 8.81 -2.97 -0.03 2.02 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.10 0.98 7.89 -51.93 -0.41 0.58 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 31 H 0.05 0.78 7.79 -51.93 -0.40 0.37 16 32 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -31.73 320.06 -7.76 -39.49 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.58 Total: -0.97 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 1.27 Total: -1.09 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: -0.23 Total: -63.49 kcal Atomic # 8 Polarization: -48.31 SS G_CDS: -2.31 Total: -50.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: 57.10 SS G_CDS: -0.71 Total: 56.40 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.73 -7.76 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.942 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds