Wall clock time and date at job start Tue Mar 31 2020 01:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.53948 * 113.74054 * 248.74535 * 3 2 1 5 5 N 1.47816 * 86.03071 * 222.08331 * 4 3 2 6 6 S 1.65607 * 134.45258 * 204.64052 * 5 4 3 7 7 O 1.42108 * 106.39995 * 23.41261 * 6 5 4 8 8 O 1.42095 * 106.39953 * 156.32738 * 6 5 4 9 9 N 1.65593 * 107.21834 * 269.86820 * 6 5 4 10 10 C 1.46503 * 119.99821 * 90.00252 * 9 6 5 11 11 C 1.46504 * 120.00377 * 270.00049 * 9 6 5 12 12 H 1.09002 * 109.46722 * 0.02562 * 11 9 6 13 13 C 1.53000 * 109.47256 * 240.00218 * 11 9 6 14 14 C 1.50691 * 109.46948 * 120.00130 * 11 9 6 15 15 H 1.07992 * 120.00684 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99502 * 180.02562 * 14 11 9 17 17 N 1.31515 * 120.00115 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99873 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.47181 * 89.99570 * 18 16 14 20 20 H 1.48494 * 109.47209 * 209.99782 * 18 16 14 21 21 H 1.48508 * 109.46927 * 329.99805 * 18 16 14 22 22 C 1.47573 * 91.05389 * 24.55143 * 5 4 3 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.08994 * 112.94198 * 20.33372 * 3 2 1 27 27 H 1.09004 * 113.76610 * 336.34244 * 4 3 2 28 28 H 1.09001 * 113.76922 * 107.74687 * 4 3 2 29 29 H 1.08998 * 109.47402 * 89.99972 * 10 9 6 30 30 H 1.09000 * 109.47236 * 209.99619 * 10 9 6 31 31 H 1.09000 * 109.47533 * 330.00001 * 10 9 6 32 32 H 1.09000 * 109.47066 * 300.00550 * 13 11 9 33 33 H 1.09002 * 109.46860 * 59.99290 * 13 11 9 34 34 H 1.08999 * 109.47221 * 179.97438 * 13 11 9 35 35 H 0.96999 * 119.99355 * 180.02562 * 17 16 14 36 36 H 1.09005 * 113.76816 * 221.15233 * 22 5 4 37 37 H 1.09000 * 113.77248 * 89.75596 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 2.7291 1.6638 -1.3134 5 7 3.7844 2.2455 -0.4572 6 16 4.9360 3.4164 -0.6697 7 8 4.4682 4.2535 -1.7185 8 8 5.2590 3.9014 0.6263 9 7 6.2974 2.6670 -1.2414 10 6 6.4983 2.5142 -2.6845 11 6 7.3011 2.1567 -0.3041 12 1 6.9807 2.3602 0.7177 13 6 8.6412 2.8471 -0.5660 14 6 7.4564 0.6699 -0.4947 15 1 6.8669 0.1565 -1.2397 16 6 8.3513 -0.0349 0.2822 17 7 9.0697 0.5904 1.1891 18 14 8.5444 -1.8778 0.0455 19 1 9.5988 -2.1391 -0.9670 20 1 8.9302 -2.5048 1.3351 21 1 7.2574 -2.4546 -0.4199 22 6 3.3983 1.3658 0.6631 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.3233 2.0764 0.3488 27 1 3.0566 0.7960 -1.8859 28 1 2.1980 2.3986 -1.9185 29 1 7.0344 3.3811 -3.0706 30 1 7.0794 1.6124 -2.8771 31 1 5.5305 2.4354 -3.1798 32 1 8.9613 2.6434 -1.5878 33 1 8.5287 3.9225 -0.4282 34 1 9.3878 2.4678 0.1317 35 1 9.6994 0.0945 1.7353 36 1 3.4005 1.8632 1.6331 37 1 3.9228 0.4104 0.6724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:23 Heat of formation + Delta-G solvation = -101.585758 kcal Electronic energy + Delta-G solvation = -21154.738935 eV Core-core repulsion = 17866.900450 eV Total energy + Delta-G solvation = -3287.838485 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.49688 -38.36654 -37.90095 -37.36052 -36.95466 -34.52486 -30.95683 -29.22682 -27.36363 -27.21339 -27.00183 -26.86933 -22.64567 -22.10806 -19.77603 -18.78234 -18.57405 -18.34492 -17.81242 -17.29834 -16.64377 -16.05778 -15.94188 -15.29998 -15.17919 -14.70524 -14.61160 -14.51018 -13.78858 -13.63194 -13.54086 -13.45610 -13.28218 -13.20790 -13.02139 -12.77598 -12.67225 -12.52706 -12.24333 -12.22913 -12.15640 -12.08297 -11.91265 -11.22427 -10.51581 -10.50393 -10.16150 -9.66262 -8.10346 -6.25515 -0.42427 1.44790 1.46487 1.55783 1.85520 2.44030 2.51654 2.90144 3.14222 3.17972 3.48948 3.70558 4.00131 4.12072 4.47998 4.56953 4.60201 4.64000 4.66807 4.69961 4.74922 4.81096 4.91947 4.95195 4.96302 4.97647 5.12928 5.22231 5.44575 5.59444 5.69219 5.83695 6.08474 6.27010 6.28285 6.83392 7.44269 8.94313 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015373 B = 0.007579 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.990303 B = 3693.615964 C = 4882.475059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.074 3.926 4 C 0.105 3.895 5 N -1.044 6.044 6 S 2.812 3.188 7 O -0.999 6.999 8 O -1.011 7.011 9 N -1.000 6.000 10 C 0.102 3.898 11 C 0.272 3.728 12 H 0.023 0.977 13 C -0.138 4.138 14 C -0.529 4.529 15 H 0.066 0.934 16 C 0.017 3.983 17 N -0.918 5.918 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.267 1.267 22 C 0.120 3.880 23 H 0.096 0.904 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.123 0.877 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.018 0.982 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.089 0.911 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.186 -1.125 -4.825 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.312 6.312 3 C 0.013 3.987 4 C -0.020 4.020 5 N -0.887 5.887 6 S 2.824 3.176 7 O -0.984 6.984 8 O -0.996 6.996 9 N -0.841 5.841 10 C -0.044 4.044 11 C 0.168 3.832 12 H 0.041 0.959 13 C -0.197 4.197 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.183 4.183 17 N -0.557 5.557 18 Si 0.785 3.215 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.191 1.191 22 C -0.006 4.006 23 H 0.114 0.886 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.140 0.860 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.896 -0.225 -4.561 15.580 hybrid contribution 0.644 -0.970 0.088 1.168 sum -14.252 -1.196 -4.473 14.985 Atomic orbital electron populations 1.23055 0.79066 1.04024 1.01306 1.87960 1.21944 1.26850 1.94464 1.24220 0.93323 0.86206 0.94965 1.23520 0.85173 0.98181 0.95089 1.60489 1.48527 1.54293 1.25421 1.00725 0.71669 0.73274 0.71936 1.93513 1.81556 1.65147 1.58166 1.93523 1.84172 1.79432 1.42452 1.57765 1.36125 1.75834 1.14394 1.21348 1.02022 1.02487 0.78500 1.18400 0.84963 0.93123 0.86729 0.95909 1.21935 1.00364 0.96327 1.01116 1.21582 1.22532 0.92702 1.20060 0.91561 1.25689 0.95240 1.02633 0.94700 1.70017 1.25571 1.37313 1.22769 0.85543 0.78585 0.80097 0.77298 1.20145 1.21305 1.19108 1.23039 0.93249 0.93711 0.90570 0.88552 0.92525 0.92706 0.85974 0.88913 0.87919 0.92932 0.90586 0.90938 0.93758 0.96277 0.91110 0.92686 0.89262 0.89864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.86 113.37 1.23 1.53 16 2 O -0.39 -8.76 10.73 -148.98 -1.60 -10.36 16 3 C 0.07 1.64 4.48 31.25 0.14 1.78 16 4 C 0.11 2.58 8.82 86.44 0.76 3.34 16 5 N -1.04 -34.30 4.18 -533.71 -2.23 -36.53 16 6 S 2.81 113.83 6.60 -56.49 -0.37 113.45 16 7 O -1.00 -40.78 17.18 -128.00 -2.20 -42.98 16 8 O -1.01 -48.22 16.67 -128.00 -2.13 -50.35 16 9 N -1.00 -42.49 3.12 -520.44 -1.62 -44.12 16 10 C 0.10 3.61 9.28 127.77 1.19 4.80 16 11 C 0.27 13.71 2.62 44.24 0.12 13.83 16 12 H 0.02 1.31 6.91 -2.39 -0.02 1.30 16 13 C -0.14 -6.76 8.97 71.98 0.65 -6.11 16 14 C -0.53 -27.40 7.99 25.60 0.20 -27.20 16 15 H 0.07 3.31 7.33 -2.91 -0.02 3.29 16 16 C 0.02 0.91 5.30 84.66 0.45 1.36 16 17 N -0.92 -51.44 11.32 21.45 0.24 -51.19 16 18 Si 0.96 41.84 29.54 68.60 2.03 43.87 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 C 0.12 3.57 8.81 86.49 0.76 4.33 16 23 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 26 H 0.12 2.10 7.89 -2.39 -0.02 2.08 16 27 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 28 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 2.73 7.02 -2.39 -0.02 2.71 16 31 H 0.07 2.18 7.79 -2.39 -0.02 2.17 16 32 H 0.04 2.00 7.67 -2.39 -0.02 1.99 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 35 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 36 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -67.62 320.06 -1.34 -68.96 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.05 Total: 11.60 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 5.50 Total: -2.35 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -3.61 Total: -131.84 kcal Atomic # 8 Polarization: -97.76 SS G_CDS: -5.93 Total: -103.69 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 113.83 SS G_CDS: -0.37 Total: 113.45 kcal Total: -67.62 -1.34 -68.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.627 kcal (2) G-P(sol) polarization free energy of solvation -67.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds