Wall clock time and date at job start Tue Mar 31 2020 01:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53946 * 113.74181 * 248.73733 * 3 2 1 5 5 N 1.47812 * 86.03688 * 222.08446 * 4 3 2 6 6 S 1.65599 * 134.45560 * 204.64158 * 5 4 3 7 7 O 1.42106 * 106.39963 * 23.40856 * 6 5 4 8 8 O 1.42098 * 106.40116 * 156.32909 * 6 5 4 9 9 N 1.65595 * 107.22085 * 269.87134 * 6 5 4 10 10 C 1.46501 * 119.99893 * 270.00078 * 9 6 5 11 11 C 1.46501 * 120.00348 * 89.99517 * 9 6 5 12 12 H 1.08993 * 109.47010 * 0.02562 * 11 9 6 13 13 C 1.52999 * 109.46750 * 120.00108 * 11 9 6 14 14 C 1.50705 * 109.47230 * 240.00042 * 11 9 6 15 15 H 1.07998 * 119.99993 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99489 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00376 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.47261 * 60.00041 * 18 16 14 20 20 H 1.48500 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47369 * 299.99962 * 18 16 14 22 22 C 1.47580 * 91.05055 * 24.55047 * 5 4 3 23 23 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 26 26 H 1.09003 * 112.94831 * 20.33264 * 3 2 1 27 27 H 1.09004 * 113.76766 * 336.35201 * 4 3 2 28 28 H 1.08997 * 113.77185 * 107.74396 * 4 3 2 29 29 H 1.09000 * 109.47276 * 89.99769 * 10 9 6 30 30 H 1.08997 * 109.47783 * 209.99858 * 10 9 6 31 31 H 1.09000 * 109.47080 * 329.99795 * 10 9 6 32 32 H 1.09002 * 109.47426 * 60.00332 * 13 11 9 33 33 H 1.09003 * 109.47306 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47477 * 300.00317 * 13 11 9 35 35 H 0.97001 * 120.00318 * 179.97438 * 17 16 14 36 36 H 1.09006 * 113.76478 * 221.15127 * 22 5 4 37 37 H 1.08999 * 113.77096 * 89.75187 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.7292 1.6638 -1.3132 5 7 3.7844 2.2456 -0.4571 6 16 4.9359 3.4165 -0.6696 7 8 4.4682 4.2535 -1.7185 8 8 5.2589 3.9015 0.6264 9 7 6.2974 2.6671 -1.2412 10 6 7.3011 2.1569 -0.3039 11 6 6.4984 2.5142 -2.6843 12 1 5.6541 2.9517 -3.2171 13 6 7.7871 3.2275 -3.0982 14 6 6.6033 1.0498 -3.0245 15 1 6.5275 0.3073 -2.2440 16 6 6.7961 0.6581 -4.3323 17 7 6.8890 1.5623 -5.2828 18 14 6.9255 -1.1571 -4.7542 19 1 5.6741 -1.8489 -4.3532 20 1 7.1293 -1.3120 -6.2169 21 1 8.0753 -1.7534 -4.0278 22 6 3.3982 1.3659 0.6633 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.3233 2.0765 0.3488 27 1 3.0567 0.7960 -1.8858 28 1 2.1982 2.3985 -1.9185 29 1 7.0637 1.1255 -0.0432 30 1 8.2861 2.1966 -0.7688 31 1 7.3002 2.7690 0.5981 32 1 8.6316 2.7903 -2.5654 33 1 7.9369 3.1134 -4.1718 34 1 7.7112 4.2867 -2.8521 35 1 7.0250 1.2867 -6.2028 36 1 3.4003 1.8634 1.6332 37 1 3.9226 0.4105 0.6726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407973003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:26 Heat of formation + Delta-G solvation = -76.738696 kcal Electronic energy + Delta-G solvation = -21162.767103 eV Core-core repulsion = 17876.006068 eV Total energy + Delta-G solvation = -3286.761035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.41319 -36.67826 -36.37430 -36.12386 -35.26280 -32.59235 -29.06376 -28.14677 -26.19586 -26.00328 -25.50471 -25.13055 -21.10598 -20.63456 -18.28578 -17.32318 -17.17581 -16.60013 -16.41683 -15.74744 -15.12990 -14.95936 -14.61333 -13.92109 -13.71936 -13.33634 -13.12712 -12.82523 -12.52515 -12.42514 -11.94182 -11.79727 -11.58470 -11.52334 -11.36077 -11.22002 -11.16046 -11.04507 -10.98908 -10.82249 -10.46257 -10.27174 -10.02930 -9.58171 -9.31811 -8.81545 -8.47992 -7.94281 -6.08852 -4.17445 1.14848 3.26537 3.30345 3.31980 3.36500 3.73138 4.11666 4.36092 4.43773 4.76428 4.82704 4.93695 5.21339 5.24862 5.29334 5.52028 5.57117 5.70401 5.73204 5.78910 6.03812 6.11276 6.18805 6.34430 6.60570 6.69436 6.84989 6.88941 7.10279 7.12595 7.49418 7.63583 7.78343 8.04526 8.26640 8.85826 9.49048 10.96109 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.007742 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.384075 B = 3615.991758 C = 4841.806652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.052 3.948 4 C 0.114 3.886 5 N -1.039 6.039 6 S 2.799 3.201 7 O -0.974 6.974 8 O -0.993 6.993 9 N -0.990 5.990 10 C 0.100 3.900 11 C 0.267 3.733 12 H 0.058 0.942 13 C -0.146 4.146 14 C -0.525 4.525 15 H 0.061 0.939 16 C 0.064 3.936 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.130 3.870 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.043 0.957 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.093 0.907 34 H 0.012 0.988 35 H 0.264 0.736 36 H 0.085 0.915 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.823 -1.972 9.829 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.009 4.009 4 C -0.012 4.012 5 N -0.880 5.880 6 S 2.810 3.190 7 O -0.959 6.959 8 O -0.978 6.978 9 N -0.832 5.832 10 C -0.046 4.046 11 C 0.164 3.836 12 H 0.075 0.925 13 C -0.205 4.205 14 C -0.564 4.564 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.724 3.276 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.004 3.996 23 H 0.059 0.941 24 H 0.103 0.897 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.101 0.899 29 H 0.061 0.939 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.112 0.888 34 H 0.031 0.969 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.635 -1.025 9.769 13.079 hybrid contribution 0.119 -1.267 -0.498 1.367 sum -8.516 -2.292 9.272 12.796 Atomic orbital electron populations 1.22802 0.81161 1.02727 1.00009 1.87970 1.19670 1.27106 1.94509 1.24459 0.94068 0.85285 0.97039 1.23248 0.85612 0.98276 0.94030 1.60725 1.49469 1.54310 1.23457 1.01322 0.72025 0.73196 0.72442 1.93579 1.80935 1.63941 1.57424 1.93520 1.83944 1.78772 1.41543 1.57783 1.34100 1.75324 1.16036 1.21241 0.93716 0.97903 0.91747 1.18725 0.95921 0.96276 0.72649 0.92474 1.22068 0.98343 0.95656 1.04451 1.21345 1.50511 0.91509 0.93060 0.92041 1.24924 0.94962 0.97690 0.96264 1.69868 1.49097 1.32888 1.00781 0.86589 0.78661 0.85086 0.77216 1.20179 1.21262 1.20305 1.22823 0.91970 0.94253 0.90549 0.94070 0.89709 0.93807 0.88630 0.88490 0.89855 0.93940 0.90638 0.92149 0.94811 0.88824 0.96852 0.92595 0.89673 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.86 101.05 1.10 1.36 16 2 O -0.38 -4.65 10.73 -35.23 -0.38 -5.03 16 3 C 0.05 0.64 4.48 -25.80 -0.12 0.53 16 4 C 0.11 1.74 8.82 -2.84 -0.03 1.72 16 5 N -1.04 -17.65 4.18 -118.80 -0.50 -18.15 16 6 S 2.80 57.00 6.65 -107.50 -0.71 56.28 16 7 O -0.97 -22.77 16.67 -57.17 -0.95 -23.73 16 8 O -0.99 -20.76 16.71 -57.17 -0.96 -21.71 16 9 N -0.99 -21.17 3.12 -115.85 -0.36 -21.54 16 10 C 0.10 1.85 9.90 59.85 0.59 2.44 16 11 C 0.27 6.65 2.62 -69.08 -0.18 6.46 16 12 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 13 C -0.15 -3.51 8.95 37.16 0.33 -3.18 16 14 C -0.52 -13.66 8.37 -34.44 -0.29 -13.95 16 15 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 16 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 17 N -0.89 -24.55 11.32 55.43 0.63 -23.93 16 18 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.13 1.76 8.81 -2.97 -0.03 1.74 16 23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.10 0.99 7.89 -51.93 -0.41 0.58 16 27 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.38 6.43 -51.93 -0.33 1.04 16 31 H 0.06 1.01 7.02 -51.93 -0.36 0.65 16 32 H 0.03 0.76 6.66 -51.93 -0.35 0.41 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 318.55 15.07 4.80 4.80 Total: -1.00 -31.75 318.55 -7.63 -39.38 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.47 Total: -0.68 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 1.29 Total: -1.28 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.23 Total: -63.61 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -2.29 Total: -50.47 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 57.00 SS G_CDS: -0.71 Total: 56.28 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.75 -7.63 -39.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.360 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds