Wall clock time and date at job start Tue Mar 31 2020 01:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 C 1.53946 * 113.74181 * 248.73733 * 3 2 1 5 5 N 1.47812 * 86.03688 * 222.08446 * 4 3 2 6 6 S 1.65599 * 134.45560 * 204.64158 * 5 4 3 7 7 O 1.42106 * 106.39963 * 23.40856 * 6 5 4 8 8 O 1.42098 * 106.40116 * 156.32909 * 6 5 4 9 9 N 1.65595 * 107.22085 * 269.87134 * 6 5 4 10 10 C 1.46501 * 119.99893 * 270.00078 * 9 6 5 11 11 C 1.46501 * 120.00348 * 89.99517 * 9 6 5 12 12 H 1.08993 * 109.47010 * 0.02562 * 11 9 6 13 13 C 1.52999 * 109.46750 * 120.00108 * 11 9 6 14 14 C 1.50705 * 109.47230 * 240.00042 * 11 9 6 15 15 H 1.07998 * 119.99993 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99489 * 180.02562 * 14 11 9 17 17 N 1.31509 * 120.00376 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99610 * 180.02562 * 16 14 11 19 19 H 1.48507 * 109.47261 * 60.00041 * 18 16 14 20 20 H 1.48500 * 109.47063 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47369 * 299.99962 * 18 16 14 22 22 C 1.47580 * 91.05055 * 24.55047 * 5 4 3 23 23 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 26 26 H 1.09003 * 112.94831 * 20.33264 * 3 2 1 27 27 H 1.09004 * 113.76766 * 336.35201 * 4 3 2 28 28 H 1.08997 * 113.77185 * 107.74396 * 4 3 2 29 29 H 1.09000 * 109.47276 * 89.99769 * 10 9 6 30 30 H 1.08997 * 109.47783 * 209.99858 * 10 9 6 31 31 H 1.09000 * 109.47080 * 329.99795 * 10 9 6 32 32 H 1.09002 * 109.47426 * 60.00332 * 13 11 9 33 33 H 1.09003 * 109.47306 * 179.97438 * 13 11 9 34 34 H 1.09000 * 109.47477 * 300.00317 * 13 11 9 35 35 H 0.97001 * 120.00318 * 179.97438 * 17 16 14 36 36 H 1.09006 * 113.76478 * 221.15127 * 22 5 4 37 37 H 1.08999 * 113.77096 * 89.75187 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.7292 1.6638 -1.3132 5 7 3.7844 2.2456 -0.4571 6 16 4.9359 3.4165 -0.6696 7 8 4.4682 4.2535 -1.7185 8 8 5.2589 3.9015 0.6264 9 7 6.2974 2.6671 -1.2412 10 6 7.3011 2.1569 -0.3039 11 6 6.4984 2.5142 -2.6843 12 1 5.6541 2.9517 -3.2171 13 6 7.7871 3.2275 -3.0982 14 6 6.6033 1.0498 -3.0245 15 1 6.5275 0.3073 -2.2440 16 6 6.7961 0.6581 -4.3323 17 7 6.8890 1.5623 -5.2828 18 14 6.9255 -1.1571 -4.7542 19 1 5.6741 -1.8489 -4.3532 20 1 7.1293 -1.3120 -6.2169 21 1 8.0753 -1.7534 -4.0278 22 6 3.3982 1.3659 0.6633 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 1.3233 2.0765 0.3488 27 1 3.0567 0.7960 -1.8858 28 1 2.1982 2.3985 -1.9185 29 1 7.0637 1.1255 -0.0432 30 1 8.2861 2.1966 -0.7688 31 1 7.3002 2.7690 0.5981 32 1 8.6316 2.7903 -2.5654 33 1 7.9369 3.1134 -4.1718 34 1 7.7112 4.2867 -2.8521 35 1 7.0250 1.2867 -6.2028 36 1 3.4003 1.8634 1.6332 37 1 3.9226 0.4105 0.6726 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407973003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:26 Heat of formation + Delta-G solvation = -100.862972 kcal Electronic energy + Delta-G solvation = -21163.813210 eV Core-core repulsion = 17876.006068 eV Total energy + Delta-G solvation = -3287.807142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49683 -38.37013 -37.91126 -37.36170 -36.95845 -34.53118 -30.94192 -29.23069 -27.35054 -27.27838 -27.02771 -26.82128 -22.62774 -22.10452 -19.76357 -18.80070 -18.57565 -18.35202 -17.81657 -17.29220 -16.64648 -16.06787 -15.95133 -15.32591 -15.18019 -14.70614 -14.65958 -14.57236 -13.75625 -13.61313 -13.53224 -13.48111 -13.27283 -13.22233 -12.95178 -12.78767 -12.64491 -12.53568 -12.27510 -12.22941 -12.17946 -12.08540 -11.89086 -11.21256 -10.51816 -10.51204 -10.15727 -9.65725 -8.10570 -6.25970 -0.41952 1.45434 1.45742 1.53458 1.85353 2.43562 2.50764 2.89107 3.14260 3.17381 3.50723 3.69705 4.00814 4.13941 4.48433 4.56267 4.59745 4.63257 4.69031 4.69581 4.75287 4.82738 4.91186 4.94050 4.95506 4.99373 5.13554 5.14310 5.44755 5.59239 5.71959 5.83733 6.07878 6.26934 6.27405 6.82757 7.43950 8.93762 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.007742 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.384075 B = 3615.991758 C = 4841.806652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.393 6.393 3 C 0.073 3.927 4 C 0.101 3.899 5 N -1.045 6.045 6 S 2.813 3.187 7 O -1.011 7.011 8 O -0.999 6.999 9 N -1.000 6.000 10 C 0.096 3.904 11 C 0.273 3.727 12 H 0.022 0.978 13 C -0.140 4.140 14 C -0.530 4.530 15 H 0.064 0.936 16 C 0.017 3.983 17 N -0.918 5.918 18 Si 0.958 3.042 19 H -0.271 1.271 20 H -0.287 1.287 21 H -0.270 1.270 22 C 0.125 3.875 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.048 0.952 26 H 0.123 0.877 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.019 0.981 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 -3.323 11.377 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.311 6.311 3 C 0.013 3.987 4 C -0.025 4.025 5 N -0.887 5.887 6 S 2.825 3.175 7 O -0.996 6.996 8 O -0.983 6.983 9 N -0.841 5.841 10 C -0.049 4.049 11 C 0.169 3.831 12 H 0.040 0.960 13 C -0.199 4.199 14 C -0.570 4.570 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.557 5.557 18 Si 0.784 3.216 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.195 1.195 22 C 0.000 4.000 23 H 0.078 0.922 24 H 0.115 0.885 25 H 0.067 0.933 26 H 0.141 0.859 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.429 -2.378 11.346 14.943 hybrid contribution 0.288 -0.868 -0.932 1.306 sum -9.141 -3.246 10.414 14.232 Atomic orbital electron populations 1.23051 0.79169 1.04044 1.01207 1.87943 1.21866 1.26841 1.94412 1.24238 0.94025 0.86215 0.94264 1.23437 0.85695 0.97761 0.95569 1.60488 1.48549 1.54402 1.25303 1.00681 0.71917 0.73289 0.71656 1.93526 1.81506 1.65790 1.58764 1.93501 1.84259 1.79295 1.41289 1.57722 1.35688 1.75740 1.14961 1.21413 0.92956 0.98912 0.91642 1.18387 0.94686 0.95641 0.74435 0.95983 1.21953 0.98652 0.96216 1.03104 1.21558 1.50051 0.92089 0.93252 0.91752 1.25681 0.94738 1.01585 0.96238 1.70003 1.49948 1.34718 1.01015 0.85610 0.78839 0.80312 0.76839 1.19656 1.21266 1.19544 1.23120 0.92526 0.93871 0.90486 0.92175 0.88454 0.93291 0.85924 0.90060 0.89631 0.92694 0.90729 0.90456 0.93564 0.91069 0.96143 0.92667 0.87537 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.86 113.37 1.23 1.54 16 2 O -0.39 -8.78 10.73 -148.98 -1.60 -10.38 16 3 C 0.07 1.64 4.48 31.25 0.14 1.78 16 4 C 0.10 3.02 8.82 86.44 0.76 3.78 16 5 N -1.04 -34.46 4.18 -533.61 -2.23 -36.69 16 6 S 2.81 113.74 6.65 -56.49 -0.38 113.36 16 7 O -1.01 -48.18 16.67 -128.00 -2.13 -50.31 16 8 O -1.00 -40.51 16.71 -128.00 -2.14 -42.65 16 9 N -1.00 -42.50 3.12 -520.45 -1.62 -44.12 16 10 C 0.10 3.41 9.90 127.77 1.26 4.67 16 11 C 0.27 13.76 2.62 44.25 0.12 13.87 16 12 H 0.02 1.27 6.91 -2.39 -0.02 1.26 16 13 C -0.14 -6.82 8.95 71.98 0.64 -6.18 16 14 C -0.53 -27.60 8.37 25.60 0.21 -27.38 16 15 H 0.06 3.24 7.65 -2.91 -0.02 3.22 16 16 C 0.02 0.92 5.30 84.65 0.45 1.37 16 17 N -0.92 -51.50 11.32 21.45 0.24 -51.26 16 18 Si 0.96 41.95 29.54 68.60 2.03 43.98 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C 0.12 3.10 8.81 86.49 0.76 3.86 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 24 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.12 2.11 7.89 -2.39 -0.02 2.09 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 2.63 6.43 -2.39 -0.02 2.61 16 31 H 0.08 2.46 7.02 -2.39 -0.02 2.44 16 32 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 33 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 34 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -67.50 318.55 -1.19 -68.69 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 1.06 Total: 12.06 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 5.58 Total: -2.68 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -3.61 Total: -132.07 kcal Atomic # 8 Polarization: -97.47 SS G_CDS: -5.87 Total: -103.34 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 113.74 SS G_CDS: -0.38 Total: 113.36 kcal Total: -67.50 -1.19 -68.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407973003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.176 kcal (2) G-P(sol) polarization free energy of solvation -67.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds