Wall clock time and date at job start Tue Mar 31 2020 01:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.47060 * 120.81601 * 269.72660 * 17 14 12 19 19 C 1.52890 * 108.65013 * 230.30436 * 18 17 14 20 20 C 1.53143 * 109.08879 * 307.51735 * 19 18 17 21 21 C 1.53066 * 109.42823 * 59.60764 * 20 19 18 22 22 O 1.42141 * 120.80955 * 90.00098 * 17 14 12 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 28 28 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 29 29 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 30 30 H 1.09002 * 109.67732 * 350.09331 * 18 17 14 31 31 H 1.08995 * 109.68298 * 110.63922 * 18 17 14 32 32 H 1.08998 * 109.62416 * 187.56058 * 19 18 17 33 33 H 1.09000 * 109.39227 * 67.33022 * 19 18 17 34 34 H 1.09002 * 109.47423 * 299.62453 * 20 19 18 35 35 H 1.08998 * 109.47874 * 179.59625 * 20 19 18 36 36 H 1.09010 * 109.49179 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.51576 * 59.99345 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.4392 2.1694 3.1984 19 6 1.6863 2.9811 4.4703 20 6 1.1250 2.2139 5.6710 21 6 1.8182 0.8532 5.7751 22 8 1.5813 0.1077 4.5764 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1611 -3.4845 27 1 2.4158 -2.7376 0.9718 28 1 1.6238 -2.2851 2.5003 29 1 0.6905 -2.3002 0.9847 30 1 1.9527 2.6389 2.3593 31 1 0.3689 2.1262 2.9966 32 1 1.1891 3.9477 4.3901 33 1 2.7580 3.1305 4.6017 34 1 0.0530 2.0665 5.5391 35 1 1.3042 2.7839 6.5826 36 1 1.4190 0.3060 6.6292 37 1 2.8903 0.9999 5.9065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407974070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:28 Heat of formation + Delta-G solvation = -67.469516 kcal Electronic energy + Delta-G solvation = -21558.498294 eV Core-core repulsion = 18272.139201 eV Total energy + Delta-G solvation = -3286.359094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.66931 -36.81804 -36.15693 -35.31556 -33.76888 -32.58212 -32.43518 -29.08065 -26.63208 -25.56963 -25.12499 -24.39605 -20.92324 -20.59602 -18.90600 -17.58666 -16.97362 -16.74934 -16.25045 -15.44607 -14.97459 -14.83832 -14.41183 -14.33054 -13.75387 -13.48000 -13.10415 -13.04146 -12.81542 -12.06763 -11.81112 -11.78050 -11.65973 -11.36556 -11.28492 -11.25592 -11.22029 -10.97272 -10.82342 -10.77453 -10.47866 -10.27013 -10.18443 -9.98514 -9.27124 -8.94945 -8.45622 -7.98132 -6.07831 -4.14235 0.82646 2.85191 3.29934 3.36198 3.39662 3.82468 4.17856 4.40891 4.66530 4.74403 4.75897 5.01892 5.23639 5.23962 5.29739 5.43958 5.60526 5.67417 5.71479 5.80289 5.86732 6.05381 6.12136 6.22615 6.41544 6.65148 6.78280 6.80245 6.99570 7.07721 7.46722 7.63193 7.78047 8.03561 8.26712 8.88050 9.51545 10.97945 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.005946 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.297826 B = 4707.963674 C = 4976.846467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.265 3.735 3 H 0.058 0.942 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.978 5.978 13 C 0.110 3.890 14 S 2.786 3.214 15 O -0.978 6.978 16 O -0.957 6.957 17 N -0.878 5.878 18 C 0.098 3.902 19 C -0.135 4.135 20 C -0.148 4.148 21 C 0.030 3.970 22 O -0.124 6.124 23 H 0.093 0.907 24 H 0.034 0.966 25 H 0.011 0.989 26 H 0.263 0.737 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 2.492 14.057 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.162 3.838 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.212 1.212 12 N -0.822 5.822 13 C -0.037 4.037 14 S 2.795 3.205 15 O -0.962 6.962 16 O -0.942 6.942 17 N -0.754 5.754 18 C -0.028 4.028 19 C -0.174 4.174 20 C -0.186 4.186 21 C -0.049 4.049 22 O -0.131 6.131 23 H 0.112 0.888 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.381 2.466 13.936 14.220 hybrid contribution -0.182 -0.247 -0.624 0.695 sum -1.563 2.218 13.312 13.586 Atomic orbital electron populations 1.22124 0.98155 0.99921 1.00633 1.18798 0.91497 0.92964 0.80510 0.92407 1.21327 1.31590 1.13055 0.89913 0.91855 1.24908 0.94919 0.95033 0.98999 1.69857 1.36518 1.22784 1.23801 0.86478 0.78642 0.80003 0.82185 1.20540 1.19833 1.21178 1.57758 1.69928 1.19873 1.34684 1.21179 1.01669 0.81520 0.99292 1.02117 0.73334 0.73211 0.71835 1.93525 1.68692 1.59863 1.74151 1.93640 1.72581 1.56649 1.71292 1.61594 1.67981 1.23603 1.22253 1.21795 1.01047 0.80949 0.98969 1.21811 1.02007 0.98944 0.94644 1.22018 1.01194 0.96415 0.99005 1.23065 1.00331 0.93951 0.87565 1.90612 1.85052 1.30756 1.06634 0.88816 0.94645 0.96960 0.92686 0.93129 0.92825 0.90918 0.87337 0.90752 0.90032 0.91249 0.90711 0.90666 0.87508 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.95 37.16 0.33 -3.05 16 2 C 0.27 6.49 2.62 -69.09 -0.18 6.31 16 3 H 0.06 1.54 6.91 -51.92 -0.36 1.18 16 4 C -0.52 -13.98 8.37 -34.44 -0.29 -14.27 16 5 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.54 11.32 55.43 0.63 -23.92 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.98 -21.09 3.12 -115.86 -0.36 -21.46 16 13 C 0.11 2.07 9.53 59.85 0.57 2.64 16 14 S 2.79 57.67 6.25 -107.50 -0.67 57.00 16 15 O -0.98 -21.67 16.92 -62.13 -1.05 -22.72 16 16 O -0.96 -22.03 15.30 -57.17 -0.87 -22.91 16 17 N -0.88 -15.00 4.03 -10.32 -0.04 -15.04 16 18 C 0.10 1.42 6.66 -3.79 -0.03 1.39 16 19 C -0.14 -1.50 6.12 -26.71 -0.16 -1.66 16 20 C -0.15 -1.45 6.06 -26.62 -0.16 -1.62 16 21 C 0.03 0.34 7.08 37.19 0.26 0.61 16 22 O -0.12 -1.96 11.48 -20.15 -0.23 -2.19 16 23 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 24 H 0.03 0.76 6.66 -51.93 -0.35 0.42 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.90 7.79 -51.93 -0.40 0.50 16 29 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 30 H 0.11 1.67 6.92 -51.93 -0.36 1.31 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 310.00 15.07 4.67 4.67 Total: -1.00 -31.61 310.00 -8.16 -39.77 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.46 Total: -1.22 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 0.25 Total: -8.02 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.22 Total: -60.42 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.16 Total: -47.83 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.67 Total: 57.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.61 -8.16 -39.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.700 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds