Wall clock time and date at job start Tue Mar 31 2020 01:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.46497 * 120.00073 * 60.00310 * 12 2 1 14 14 S 1.65606 * 120.00188 * 240.00233 * 12 2 1 15 15 O 1.42096 * 106.40395 * 203.54186 * 14 12 2 16 16 O 1.42108 * 106.39975 * 336.45918 * 14 12 2 17 17 N 1.65593 * 107.21842 * 89.99816 * 14 12 2 18 18 C 1.47060 * 120.81601 * 269.72660 * 17 14 12 19 19 C 1.52890 * 108.65013 * 230.30436 * 18 17 14 20 20 C 1.53143 * 109.08879 * 307.51735 * 19 18 17 21 21 C 1.53066 * 109.42823 * 59.60764 * 20 19 18 22 22 O 1.42141 * 120.80955 * 90.00098 * 17 14 12 23 23 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 24 24 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.09001 * 109.46905 * 89.99959 * 13 12 2 28 28 H 1.09005 * 109.47144 * 209.99900 * 13 12 2 29 29 H 1.08993 * 109.47302 * 330.00087 * 13 12 2 30 30 H 1.09002 * 109.67732 * 350.09331 * 18 17 14 31 31 H 1.08995 * 109.68298 * 110.63922 * 18 17 14 32 32 H 1.08998 * 109.62416 * 187.56058 * 19 18 17 33 33 H 1.09000 * 109.39227 * 67.33022 * 19 18 17 34 34 H 1.09002 * 109.47423 * 299.62453 * 20 19 18 35 35 H 1.08998 * 109.47874 * 179.59625 * 20 19 18 36 36 H 1.09010 * 109.49179 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.51576 * 59.99345 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4281 14 16 2.9703 0.1143 2.2863 15 8 3.7118 -0.8787 2.9816 16 8 3.5794 1.1831 1.5748 17 7 1.9606 0.8092 3.3997 18 6 1.4392 2.1694 3.1984 19 6 1.6863 2.9811 4.4703 20 6 1.1250 2.2139 5.6710 21 6 1.8182 0.8532 5.7751 22 8 1.5813 0.1077 4.5764 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 0.7088 1.1611 -3.4845 27 1 2.4158 -2.7376 0.9718 28 1 1.6238 -2.2851 2.5003 29 1 0.6905 -2.3002 0.9847 30 1 1.9527 2.6389 2.3593 31 1 0.3689 2.1262 2.9966 32 1 1.1891 3.9477 4.3901 33 1 2.7580 3.1305 4.6017 34 1 0.0530 2.0665 5.5391 35 1 1.3042 2.7839 6.5826 36 1 1.4190 0.3060 6.6292 37 1 2.8903 0.9999 5.9065 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407974070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:28 Heat of formation + Delta-G solvation = -89.603514 kcal Electronic energy + Delta-G solvation = -21559.458097 eV Core-core repulsion = 18272.139201 eV Total energy + Delta-G solvation = -3287.318896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.75788 -38.53428 -37.93597 -37.04283 -34.83876 -34.54268 -33.54648 -30.93094 -27.71299 -27.30811 -27.02093 -25.41301 -22.61861 -21.78170 -20.27117 -19.20427 -18.62847 -18.27077 -17.94124 -17.03473 -16.44881 -16.04178 -15.82361 -15.39265 -15.24413 -14.96351 -14.70956 -14.49562 -14.07698 -13.78784 -13.51238 -13.32276 -13.26153 -13.18952 -13.00251 -12.82311 -12.62011 -12.30599 -12.24392 -12.15612 -12.11448 -11.93573 -11.68885 -11.20147 -11.16567 -10.50589 -10.20836 -9.73047 -8.11806 -6.25207 -0.74218 1.43432 1.43979 1.46454 1.55293 2.27140 2.45602 2.80689 3.16680 3.51164 3.82305 3.85942 3.92467 4.06721 4.16387 4.39995 4.54278 4.56768 4.67078 4.79782 4.83048 4.95697 4.97623 5.00209 5.01228 5.07780 5.11980 5.14532 5.27979 5.60385 5.67496 5.84821 5.96192 6.12449 6.28948 6.81405 7.43583 8.92643 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030786 B = 0.005946 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.297826 B = 4707.963674 C = 4976.846467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.270 3.730 3 H 0.030 0.970 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.268 1.268 11 H -0.278 1.278 12 N -0.988 5.988 13 C 0.105 3.895 14 S 2.804 3.196 15 O -0.997 6.997 16 O -0.989 6.989 17 N -0.877 5.877 18 C 0.088 3.912 19 C -0.135 4.135 20 C -0.142 4.142 21 C 0.015 3.985 22 O -0.139 6.139 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.034 0.966 26 H 0.265 0.735 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.140 0.860 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 2.476 15.459 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.048 0.952 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.192 1.192 11 H -0.203 1.203 12 N -0.831 5.831 13 C -0.040 4.040 14 S 2.813 3.187 15 O -0.981 6.981 16 O -0.973 6.973 17 N -0.757 5.757 18 C -0.037 4.037 19 C -0.173 4.173 20 C -0.180 4.180 21 C -0.063 4.063 22 O -0.145 6.145 23 H 0.089 0.911 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.126 0.874 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.124 0.876 36 H 0.157 0.843 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.186 2.436 15.349 15.695 hybrid contribution 0.064 -0.209 -0.923 0.949 sum -2.122 2.227 14.426 14.751 Atomic orbital electron populations 1.21926 0.96777 1.00294 1.00552 1.18516 0.92416 0.91540 0.80945 0.95184 1.21623 1.31836 1.13150 0.91352 0.92553 1.25619 0.95120 0.95722 1.01563 1.69962 1.37085 1.23634 1.24451 0.85589 0.78003 0.79149 0.79090 1.20723 1.19235 1.20314 1.57677 1.69980 1.20988 1.34466 1.21333 1.01885 0.80120 1.00701 1.01294 0.73217 0.72456 0.71718 1.93487 1.69643 1.60611 1.74389 1.93594 1.73789 1.57548 1.72402 1.61007 1.67585 1.24222 1.22868 1.22039 1.01167 0.79928 1.00519 1.21875 1.02334 0.99729 0.93396 1.22020 1.01053 0.95328 0.99567 1.23497 1.00869 0.95393 0.86564 1.90590 1.84972 1.31859 1.07124 0.91080 0.93946 0.94737 0.92521 0.93495 0.90776 0.90167 0.89052 0.89809 0.87390 0.91642 0.90162 0.87580 0.84269 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.15 8.95 71.98 0.64 -5.51 16 2 C 0.27 13.39 2.62 44.24 0.12 13.51 16 3 H 0.03 1.66 6.91 -2.38 -0.02 1.64 16 4 C -0.54 -29.41 8.37 25.60 0.21 -29.20 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.04 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -50.71 11.32 21.45 0.24 -50.47 16 8 Si 0.96 43.17 29.54 68.60 2.03 45.20 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.99 -42.74 3.12 -520.46 -1.62 -44.37 16 13 C 0.11 3.91 9.53 127.77 1.22 5.13 16 14 S 2.80 117.01 6.25 -56.49 -0.35 116.66 16 15 O -1.00 -44.19 16.92 -123.26 -2.09 -46.28 16 16 O -0.99 -46.84 15.30 -128.00 -1.96 -48.80 16 17 N -0.88 -29.34 4.03 -186.57 -0.75 -30.10 16 18 C 0.09 2.47 6.66 86.24 0.57 3.05 16 19 C -0.13 -2.67 6.12 30.61 0.19 -2.49 16 20 C -0.14 -2.29 6.06 30.66 0.19 -2.10 16 21 C 0.01 0.30 7.08 72.00 0.51 0.81 16 22 O -0.14 -4.16 11.48 -31.96 -0.37 -4.53 16 23 H 0.07 3.56 6.07 -2.39 -0.01 3.55 16 24 H 0.04 1.81 6.66 -2.39 -0.02 1.79 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.07 2.42 7.79 -2.38 -0.02 2.40 16 29 H 0.08 2.83 6.43 -2.39 -0.02 2.81 16 30 H 0.09 2.87 6.92 -2.39 -0.02 2.85 16 31 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.14 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -67.87 310.00 0.28 -67.59 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.06 Total: 10.37 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.10 Total: -15.28 kcal Atomic # 7 Polarization: -122.80 SS G_CDS: -2.13 Total: -124.93 kcal Atomic # 8 Polarization: -95.20 SS G_CDS: -4.41 Total: -99.61 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Atomic # 16 Polarization: 117.01 SS G_CDS: -0.35 Total: 116.66 kcal Total: -67.87 0.28 -67.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.011 kcal (2) G-P(sol) polarization free energy of solvation -67.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds