Wall clock time and date at job start Tue Mar 31 2020 01:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42106 * 106.40062 * 203.54297 * 14 12 2 16 16 O 1.42107 * 106.39897 * 336.45833 * 14 12 2 17 17 N 1.65593 * 107.21769 * 90.00204 * 14 12 2 18 18 C 1.47066 * 120.80710 * 269.72229 * 17 14 12 19 19 C 1.52893 * 108.64599 * 230.30220 * 18 17 14 20 20 C 1.53143 * 109.09212 * 307.51994 * 19 18 17 21 21 C 1.53072 * 109.42774 * 59.61160 * 20 19 18 22 22 O 1.42131 * 120.81307 * 90.00055 * 17 14 12 23 23 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 24 24 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 28 28 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 29 29 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 30 30 H 1.08995 * 109.68146 * 350.09644 * 18 17 14 31 31 H 1.09000 * 109.67335 * 110.64425 * 18 17 14 32 32 H 1.09003 * 109.61989 * 187.56744 * 19 18 17 33 33 H 1.09000 * 109.38953 * 67.33808 * 19 18 17 34 34 H 1.09001 * 109.47816 * 299.62503 * 20 19 18 35 35 H 1.08995 * 109.47834 * 179.59572 * 20 19 18 36 36 H 1.08996 * 109.49572 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.51769 * 59.98496 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1044 -1.8181 18 6 5.1944 0.8416 -0.8991 19 6 6.5331 1.2671 -1.5027 20 6 7.3389 0.0166 -1.8660 21 6 6.5513 -0.8207 -2.8769 22 8 5.3000 -1.2074 -2.2992 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5277 4.4376 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9863 29 1 1.5295 -2.5969 -0.4707 30 1 4.5595 1.7171 -0.7634 31 1 5.3660 0.3592 0.0632 32 1 7.0891 1.8614 -0.7776 33 1 6.3535 1.8589 -2.4003 34 1 7.5191 -0.5735 -0.9674 35 1 8.2921 0.3128 -2.3038 36 1 7.1237 -1.7114 -3.1360 37 1 6.3702 -0.2311 -3.7756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407974074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:30 Heat of formation + Delta-G solvation = -59.986813 kcal Electronic energy + Delta-G solvation = -21739.979829 eV Core-core repulsion = 18453.945210 eV Total energy + Delta-G solvation = -3286.034619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -38.59580 -36.97094 -36.40043 -35.46953 -33.69268 -32.53781 -32.38006 -30.04093 -26.57753 -25.71725 -25.06247 -24.31539 -20.99229 -20.62927 -18.94065 -17.60570 -17.16560 -16.83938 -16.40226 -15.58497 -15.00440 -14.80957 -14.60339 -14.27744 -13.74330 -13.52742 -13.21618 -12.95179 -12.82688 -12.37176 -12.16751 -11.99378 -11.87780 -11.78760 -11.54449 -11.25612 -11.21205 -11.17019 -10.98099 -10.72394 -10.56703 -10.16807 -10.12220 -9.61008 -9.44961 -8.87367 -8.67987 -8.14308 -6.18485 -4.19936 0.77196 2.77206 3.21079 3.33683 3.34997 3.73759 4.12389 4.30701 4.74535 4.82538 4.84524 4.96748 5.12339 5.29096 5.35835 5.50601 5.56573 5.68006 5.79826 5.92540 5.98803 6.11692 6.13386 6.17916 6.25400 6.26235 6.40250 6.54207 6.65999 6.84178 7.07503 7.26317 7.36407 7.60251 8.40796 8.86102 9.41895 10.93736 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.007674 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.017775 B = 3647.679456 C = 4156.821834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.236 3.764 3 H 0.056 0.944 4 C -0.528 4.528 5 H 0.085 0.915 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.973 5.973 13 C 0.104 3.896 14 S 2.794 3.206 15 O -0.976 6.976 16 O -0.968 6.968 17 N -0.872 5.872 18 C 0.099 3.901 19 C -0.135 4.135 20 C -0.149 4.149 21 C 0.030 3.970 22 O -0.121 6.121 23 H 0.035 0.965 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.266 0.734 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.126 1.822 -9.637 12.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.131 3.869 3 H 0.073 0.927 4 C -0.567 4.567 5 H 0.103 0.897 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.705 3.295 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.816 5.816 13 C -0.042 4.042 14 S 2.803 3.197 15 O -0.960 6.960 16 O -0.952 6.952 17 N -0.749 5.749 18 C -0.026 4.026 19 C -0.174 4.174 20 C -0.187 4.187 21 C -0.048 4.048 22 O -0.128 6.128 23 H 0.054 0.946 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.791 2.092 -10.189 12.422 hybrid contribution -0.173 0.592 0.647 0.894 sum 6.618 2.684 -9.542 11.919 Atomic orbital electron populations 1.22414 0.98578 1.01522 0.99213 1.19139 0.91176 0.93269 0.83299 0.92678 1.21225 1.32729 1.14505 0.88212 0.89747 1.24894 0.95529 0.96541 0.95730 1.69875 1.45042 1.40068 0.97974 0.87042 0.80930 0.83967 0.77543 1.20251 1.22134 1.18608 1.57520 1.63022 1.22065 1.39001 1.21293 0.99253 0.81242 1.02454 1.01784 0.71347 0.73325 0.73256 1.93542 1.85049 1.75948 1.41500 1.93613 1.82736 1.31778 1.87097 1.61219 1.24664 1.30282 1.58746 1.21808 0.95118 0.92416 0.93231 1.21818 0.96216 0.97561 1.01776 1.22019 0.98772 0.97435 1.00465 1.23064 0.85472 1.00776 0.95522 1.90629 1.31110 1.12843 1.78194 0.94636 0.92128 0.93230 0.92436 0.93587 0.92337 0.89631 0.87643 0.89842 0.90018 0.91504 0.90475 0.90746 0.87479 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.38 8.67 37.16 0.32 -3.05 16 2 C 0.24 5.42 2.21 -69.08 -0.15 5.27 16 3 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 4 C -0.53 -13.76 8.57 -34.44 -0.30 -14.05 16 5 H 0.08 2.38 7.58 -52.49 -0.40 1.98 16 6 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 8 Si 0.88 20.83 24.37 -169.99 -4.14 16.69 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.03 6.53 56.52 0.37 -5.67 16 12 N -0.97 -20.05 3.12 -115.85 -0.36 -20.41 16 13 C 0.10 1.89 9.28 59.85 0.56 2.44 16 14 S 2.79 55.38 6.25 -107.50 -0.67 54.71 16 15 O -0.98 -20.45 16.92 -62.12 -1.05 -21.50 16 16 O -0.97 -20.53 15.30 -57.17 -0.87 -21.40 16 17 N -0.87 -15.50 4.03 -10.32 -0.04 -15.54 16 18 C 0.10 1.57 6.66 -3.79 -0.03 1.54 16 19 C -0.13 -1.62 6.12 -26.71 -0.16 -1.78 16 20 C -0.15 -1.62 6.06 -26.62 -0.16 -1.78 16 21 C 0.03 0.37 7.08 37.19 0.26 0.64 16 22 O -0.12 -2.03 11.48 -20.14 -0.23 -2.26 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.99 7.79 -51.93 -0.40 0.58 16 29 H 0.09 1.62 7.02 -51.93 -0.36 1.25 16 30 H 0.11 1.69 6.92 -51.93 -0.36 1.33 16 31 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 303.87 15.07 4.58 4.58 Total: -1.00 -31.46 303.87 -7.17 -38.63 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.39 Total: 0.31 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.25 Total: -8.81 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 0.37 Total: -60.94 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.16 Total: -45.17 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.14 Total: 16.69 kcal Atomic # 16 Polarization: 55.38 SS G_CDS: -0.67 Total: 54.71 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.46 -7.17 -38.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.360 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds