Wall clock time and date at job start Tue Mar 31 2020 01:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42106 * 106.40062 * 203.54297 * 14 12 2 16 16 O 1.42107 * 106.39897 * 336.45833 * 14 12 2 17 17 N 1.65593 * 107.21769 * 90.00204 * 14 12 2 18 18 C 1.47066 * 120.80710 * 269.72229 * 17 14 12 19 19 C 1.52893 * 108.64599 * 230.30220 * 18 17 14 20 20 C 1.53143 * 109.09212 * 307.51994 * 19 18 17 21 21 C 1.53072 * 109.42774 * 59.61160 * 20 19 18 22 22 O 1.42131 * 120.81307 * 90.00055 * 17 14 12 23 23 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 24 24 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 28 28 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 29 29 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 30 30 H 1.08995 * 109.68146 * 350.09644 * 18 17 14 31 31 H 1.09000 * 109.67335 * 110.64425 * 18 17 14 32 32 H 1.09003 * 109.61989 * 187.56744 * 19 18 17 33 33 H 1.09000 * 109.38953 * 67.33808 * 19 18 17 34 34 H 1.09001 * 109.47816 * 299.62503 * 20 19 18 35 35 H 1.08995 * 109.47834 * 179.59572 * 20 19 18 36 36 H 1.08996 * 109.49572 * 180.02562 * 21 20 19 37 37 H 1.09000 * 109.51769 * 59.98496 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.8227 -0.5648 -3.5259 16 8 2.6903 1.4972 -2.1193 17 7 4.5437 -0.1044 -1.8181 18 6 5.1944 0.8416 -0.8991 19 6 6.5331 1.2671 -1.5027 20 6 7.3389 0.0166 -1.8660 21 6 6.5513 -0.8207 -2.8769 22 8 5.3000 -1.2074 -2.2992 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5277 4.4376 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9863 29 1 1.5295 -2.5969 -0.4707 30 1 4.5595 1.7171 -0.7634 31 1 5.3660 0.3592 0.0632 32 1 7.0891 1.8614 -0.7776 33 1 6.3535 1.8589 -2.4003 34 1 7.5191 -0.5735 -0.9674 35 1 8.2921 0.3128 -2.3038 36 1 7.1237 -1.7114 -3.1360 37 1 6.3702 -0.2311 -3.7756 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407974074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:30 Heat of formation + Delta-G solvation = -83.319560 kcal Electronic energy + Delta-G solvation = -21740.991613 eV Core-core repulsion = 18453.945210 eV Total energy + Delta-G solvation = -3287.046403 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.75071 -38.59294 -38.11017 -37.09197 -34.83780 -34.52764 -33.54635 -31.82375 -27.72805 -27.30266 -26.99587 -25.41061 -22.72753 -21.79976 -20.30894 -19.18714 -18.85028 -18.48447 -17.94680 -17.19842 -16.48057 -16.14816 -15.84105 -15.40458 -15.34521 -14.92576 -14.82885 -14.45729 -14.20866 -14.04868 -13.87536 -13.61468 -13.37408 -13.27503 -13.20142 -13.00359 -12.72797 -12.31231 -12.29223 -12.11671 -12.00809 -11.71261 -11.46290 -11.40205 -11.16420 -10.74323 -10.19388 -9.81949 -8.28095 -6.32660 -0.73850 1.32712 1.34275 1.40832 1.48632 2.22874 2.32577 2.75293 3.06052 3.47609 3.81838 3.85421 3.92458 3.98547 4.14199 4.38414 4.44094 4.53934 4.59139 4.61241 4.64938 4.80368 4.84812 4.87203 4.96894 4.98056 5.06539 5.08985 5.22364 5.27791 5.45370 5.50793 5.75788 5.98127 6.34613 6.72638 7.32219 8.87366 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.007674 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.017775 B = 3647.679456 C = 4156.821834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 H 0.049 0.951 4 C -0.518 4.518 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.937 5.937 8 Si 0.926 3.074 9 H -0.262 1.262 10 H -0.296 1.296 11 H -0.249 1.249 12 N -0.982 5.982 13 C 0.100 3.900 14 S 2.808 3.192 15 O -0.988 6.988 16 O -0.984 6.984 17 N -0.876 5.876 18 C 0.090 3.910 19 C -0.133 4.133 20 C -0.145 4.145 21 C 0.017 3.983 22 O -0.142 6.142 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.267 0.733 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.137 0.863 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.490 2.683 -10.901 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.067 0.933 4 C -0.558 4.558 5 H 0.069 0.931 6 C -0.172 4.172 7 N -0.577 5.577 8 Si 0.753 3.247 9 H -0.187 1.187 10 H -0.223 1.223 11 H -0.173 1.173 12 N -0.824 5.824 13 C -0.045 4.045 14 S 2.817 3.183 15 O -0.973 6.973 16 O -0.969 6.969 17 N -0.755 5.755 18 C -0.034 4.034 19 C -0.171 4.171 20 C -0.182 4.182 21 C -0.061 4.061 22 O -0.149 6.149 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.155 0.845 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.149 2.943 -11.480 13.841 hybrid contribution -0.150 0.233 0.979 1.017 sum 7.000 3.176 -10.501 13.014 Atomic orbital electron populations 1.22380 0.96908 1.02460 1.00109 1.18957 0.92491 0.92585 0.82778 0.93341 1.21337 1.31502 1.13250 0.89676 0.93059 1.25592 0.96926 0.99299 0.95422 1.70001 1.47056 1.42059 0.98556 0.86200 0.79953 0.80819 0.77685 1.18749 1.22311 1.17346 1.57534 1.63854 1.22872 1.38133 1.21416 1.00747 0.80117 1.02246 1.01231 0.71475 0.72752 0.72857 1.93518 1.85549 1.76114 1.42087 1.93584 1.83324 1.32679 1.87279 1.60912 1.24662 1.30913 1.59026 1.21971 0.97095 0.91595 0.92765 1.21867 0.94303 0.98536 1.02429 1.22028 0.99735 0.96437 1.00031 1.23481 0.84070 1.02696 0.95872 1.90596 1.32859 1.12797 1.78645 0.92288 0.91307 0.93690 0.92399 0.91350 0.91364 0.90901 0.88423 0.91284 0.87737 0.90836 0.91058 0.87347 0.84529 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.50 8.67 71.98 0.62 -5.88 16 2 C 0.24 10.77 2.21 44.25 0.10 10.87 16 3 H 0.05 2.28 5.97 -2.39 -0.01 2.26 16 4 C -0.52 -27.41 8.57 25.60 0.22 -27.19 16 5 H 0.05 3.00 7.58 -2.91 -0.02 2.98 16 6 C 0.03 1.46 5.45 84.66 0.46 1.92 16 7 N -0.94 -55.21 13.96 21.45 0.30 -54.92 16 8 Si 0.93 42.36 24.37 68.60 1.67 44.03 16 9 H -0.26 -11.32 6.87 99.48 0.68 -10.64 16 10 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.25 -10.84 6.53 99.48 0.65 -10.19 16 12 N -0.98 -39.93 3.12 -520.43 -1.62 -41.55 16 13 C 0.10 3.58 9.28 127.77 1.19 4.77 16 14 S 2.81 109.52 6.25 -56.49 -0.35 109.17 16 15 O -0.99 -40.40 16.92 -123.27 -2.09 -42.49 16 16 O -0.98 -41.04 15.30 -128.00 -1.96 -43.00 16 17 N -0.88 -30.75 4.03 -186.56 -0.75 -31.51 16 18 C 0.09 2.83 6.66 86.24 0.57 3.40 16 19 C -0.13 -2.92 6.12 30.61 0.19 -2.73 16 20 C -0.14 -2.76 6.06 30.67 0.19 -2.58 16 21 C 0.02 0.37 7.08 72.01 0.51 0.88 16 22 O -0.14 -4.64 11.48 -31.94 -0.37 -5.01 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.07 2.65 7.67 -2.39 -0.02 2.63 16 25 H 0.04 1.87 3.27 -2.39 -0.01 1.86 16 26 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 2.28 7.79 -2.39 -0.02 2.26 16 29 H 0.07 2.77 7.02 -2.38 -0.02 2.76 16 30 H 0.10 3.15 6.92 -2.39 -0.02 3.13 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -67.25 303.87 -0.14 -67.40 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.98 Total: 14.41 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 4.05 Total: -16.54 kcal Atomic # 7 Polarization: -125.90 SS G_CDS: -2.08 Total: -127.98 kcal Atomic # 8 Polarization: -86.08 SS G_CDS: -4.41 Total: -90.49 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.67 Total: 44.03 kcal Atomic # 16 Polarization: 109.52 SS G_CDS: -0.35 Total: 109.17 kcal Total: -67.25 -0.14 -67.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407974074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.924 kcal (2) G-P(sol) polarization free energy of solvation -67.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds