Wall clock time and date at job start Tue Mar 31 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 N 1.46506 * 109.46733 * 120.00142 * 2 1 3 13 13 C 1.46494 * 120.00420 * 60.00297 * 12 2 1 14 14 S 1.65596 * 119.99722 * 239.99722 * 12 2 1 15 15 O 1.42102 * 106.40462 * 203.54329 * 14 12 2 16 16 O 1.42096 * 106.40497 * 336.46446 * 14 12 2 17 17 N 1.65604 * 107.21710 * 90.00391 * 14 12 2 18 18 C 1.47425 * 125.64548 * 269.69296 * 17 14 12 19 19 C 1.55136 * 104.71976 * 155.81771 * 18 17 14 20 20 C 1.55149 * 101.48641 * 37.29334 * 19 18 17 21 21 H 1.09000 * 110.71855 * 205.97266 * 20 19 18 22 22 O 1.42896 * 110.72320 * 82.69824 * 20 19 18 23 23 C 1.47019 * 125.64829 * 89.99771 * 17 14 12 24 24 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 25 25 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 26 26 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.47196 * 89.99281 * 13 12 2 29 29 H 1.08997 * 109.47546 * 209.99782 * 13 12 2 30 30 H 1.09004 * 109.46880 * 330.00158 * 13 12 2 31 31 H 1.08997 * 110.36511 * 274.74092 * 18 17 14 32 32 H 1.08994 * 110.36903 * 37.06656 * 18 17 14 33 33 H 1.09000 * 111.19043 * 279.18500 * 19 18 17 34 34 H 1.09002 * 110.93697 * 155.28691 * 19 18 17 35 35 H 0.96698 * 114.00146 * 66.47567 * 22 20 19 36 36 H 1.09003 * 109.88631 * 300.43966 * 23 17 14 37 37 H 1.08996 * 109.88413 * 61.60799 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5866 -4.8165 11 1 3.1475 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7118 -0.8790 2.9815 16 8 3.5793 1.1828 1.5749 17 7 1.9606 0.8089 3.3999 18 6 1.3783 2.1601 3.3065 19 6 0.0971 2.0984 4.1790 20 6 0.5619 1.1886 5.3466 21 1 -0.2874 0.6746 5.7966 22 8 1.2726 1.9476 6.3269 23 6 1.5014 0.1829 4.6483 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7097 1.1618 -3.4844 28 1 2.4157 -2.7377 0.9717 29 1 1.6237 -2.2853 2.5002 30 1 0.6904 -2.3003 0.9846 31 1 2.0736 2.9009 3.7014 32 1 1.1221 2.3922 2.2728 33 1 -0.7294 1.6426 3.6337 34 1 -0.1759 3.0897 4.5409 35 1 0.7271 2.5945 6.7949 36 1 0.9600 -0.7364 4.4249 37 1 2.3552 -0.0340 5.2902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:43 Heat of formation + Delta-G solvation = -116.185607 kcal Electronic energy + Delta-G solvation = -21418.335676 eV Core-core repulsion = 18129.864094 eV Total energy + Delta-G solvation = -3288.471582 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.93161 -36.66326 -36.15033 -35.40715 -35.19284 -32.58005 -30.04689 -29.11923 -28.62866 -25.58934 -25.14080 -22.50910 -21.25054 -20.65200 -18.50408 -17.62157 -17.40150 -16.85106 -16.28077 -15.68274 -15.09685 -14.63827 -14.44899 -13.87810 -13.44933 -13.17662 -13.03634 -12.93034 -12.75717 -12.23341 -12.03353 -11.76147 -11.62465 -11.47348 -11.36716 -11.23556 -11.20771 -10.98560 -10.84399 -10.80208 -10.46303 -10.28203 -10.12187 -10.02173 -9.26267 -8.81449 -8.46089 -7.96641 -6.08122 -4.14262 1.14612 3.27663 3.35879 3.40236 3.49840 3.96367 4.13114 4.38220 4.41742 4.58154 4.84054 5.08459 5.23592 5.28453 5.45886 5.52948 5.63934 5.71525 5.77864 5.85408 6.08469 6.14468 6.23926 6.38949 6.51808 6.63545 6.76892 6.80215 7.00699 7.46120 7.46820 7.63003 7.78351 8.03189 8.27099 8.88407 9.51620 10.97725 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.005845 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.825548 B = 4788.865736 C = 5106.066896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.518 4.518 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.990 5.990 13 C 0.111 3.889 14 S 2.791 3.209 15 O -0.991 6.991 16 O -0.968 6.968 17 N -1.022 6.022 18 C 0.127 3.873 19 C -0.161 4.161 20 C 0.094 3.906 21 H 0.075 0.925 22 O -0.559 6.559 23 C 0.130 3.870 24 H 0.010 0.990 25 H 0.093 0.907 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.378 0.622 36 H 0.075 0.925 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 1.037 14.351 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.558 4.558 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.832 5.832 13 C -0.036 4.036 14 S 2.802 3.198 15 O -0.975 6.975 16 O -0.952 6.952 17 N -0.861 5.861 18 C 0.002 3.998 19 C -0.200 4.200 20 C 0.033 3.967 21 H 0.092 0.908 22 O -0.364 6.364 23 C 0.004 3.996 24 H 0.029 0.971 25 H 0.111 0.889 26 H 0.052 0.948 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.225 0.775 36 H 0.093 0.907 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.224 0.791 13.933 14.580 hybrid contribution -0.690 -0.140 -0.772 1.045 sum -4.913 0.651 13.161 14.063 Atomic orbital electron populations 1.22115 0.98317 0.99710 1.00531 1.18742 0.91271 0.93000 0.80590 0.92411 1.21380 1.31580 1.12825 0.90013 0.91892 1.24912 0.94951 0.95031 0.99020 1.69864 1.36700 1.22775 1.23668 0.86434 0.78602 0.79686 0.82657 1.19720 1.21005 1.20878 1.57813 1.70145 1.19742 1.35534 1.21134 1.01681 0.82125 0.98640 1.01650 0.73348 0.72910 0.71883 1.93531 1.68894 1.60343 1.74776 1.93596 1.73581 1.56073 1.71960 1.59392 1.67580 1.25099 1.33992 1.21899 0.93566 0.83623 1.00718 1.23516 0.98314 1.00704 0.97515 1.22787 0.93494 0.92043 0.88328 0.90767 1.86564 1.40621 1.55222 1.54034 1.21587 0.98267 0.94604 0.85163 0.97104 0.88890 0.94784 0.92766 0.93237 0.93472 0.91015 0.91417 0.90224 0.89542 0.89883 0.77529 0.90660 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.95 37.16 0.33 -2.95 16 2 C 0.27 6.53 2.62 -69.08 -0.18 6.35 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -14.03 8.37 -34.44 -0.29 -14.32 16 5 H 0.06 1.71 7.64 -52.48 -0.40 1.31 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.99 -20.90 3.12 -115.86 -0.36 -21.26 16 13 C 0.11 2.00 9.53 59.84 0.57 2.57 16 14 S 2.79 57.65 6.30 -107.50 -0.68 56.97 16 15 O -0.99 -21.59 16.79 -57.17 -0.96 -22.55 16 16 O -0.97 -23.45 16.28 -57.17 -0.93 -24.38 16 17 N -1.02 -16.66 3.75 -111.29 -0.42 -17.08 16 18 C 0.13 1.83 6.98 -2.41 -0.02 1.81 16 19 C -0.16 -1.65 6.82 -24.46 -0.17 -1.81 16 20 C 0.09 0.94 4.33 -24.90 -0.11 0.84 16 21 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 22 O -0.56 -5.70 13.38 -35.23 -0.47 -6.17 16 23 C 0.13 1.72 6.75 -3.06 -0.02 1.70 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 26 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.05 0.71 7.79 -51.93 -0.40 0.31 16 30 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.38 2.01 9.12 45.56 0.42 2.42 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 LS Contribution 313.61 15.07 4.73 4.73 Total: -1.00 -33.58 313.61 -8.14 -41.72 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.68 Total: 0.16 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 0.03 Total: -4.21 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.15 Total: -62.43 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -2.36 Total: -53.10 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 57.65 SS G_CDS: -0.68 Total: 56.97 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.58 -8.14 -41.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.465 kcal (2) G-P(sol) polarization free energy of solvation -33.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds