Wall clock time and date at job start Tue Mar 31 2020 01:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47138 * 2 1 4 4 C 1.50695 * 109.47381 * 239.99764 * 2 1 3 5 5 H 1.08004 * 120.00546 * 240.27913 * 4 2 1 6 6 C 1.37885 * 119.99721 * 60.00164 * 4 2 1 7 7 N 1.31514 * 120.00035 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99853 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47228 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46793 * 120.00131 * 8 6 4 11 11 H 1.48500 * 109.47000 * 240.00224 * 8 6 4 12 12 N 1.46506 * 109.46733 * 120.00142 * 2 1 3 13 13 C 1.46494 * 120.00420 * 60.00297 * 12 2 1 14 14 S 1.65596 * 119.99722 * 239.99722 * 12 2 1 15 15 O 1.42102 * 106.40462 * 203.54329 * 14 12 2 16 16 O 1.42096 * 106.40497 * 336.46446 * 14 12 2 17 17 N 1.65604 * 107.21710 * 90.00391 * 14 12 2 18 18 C 1.47425 * 125.64548 * 269.69296 * 17 14 12 19 19 C 1.55136 * 104.71976 * 155.81771 * 18 17 14 20 20 C 1.55149 * 101.48641 * 37.29334 * 19 18 17 21 21 H 1.09000 * 110.71855 * 205.97266 * 20 19 18 22 22 O 1.42896 * 110.72320 * 82.69824 * 20 19 18 23 23 C 1.47019 * 125.64829 * 89.99771 * 17 14 12 24 24 H 1.08996 * 109.47481 * 299.99642 * 1 2 3 25 25 H 1.08996 * 109.46841 * 60.00367 * 1 2 3 26 26 H 1.09005 * 109.47057 * 179.97438 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.47196 * 89.99281 * 13 12 2 29 29 H 1.08997 * 109.47546 * 209.99782 * 13 12 2 30 30 H 1.09004 * 109.46880 * 330.00158 * 13 12 2 31 31 H 1.08997 * 110.36511 * 274.74092 * 18 17 14 32 32 H 1.08994 * 110.36903 * 37.06656 * 18 17 14 33 33 H 1.09000 * 111.19043 * 279.18500 * 19 18 17 34 34 H 1.09002 * 110.93697 * 155.28691 * 19 18 17 35 35 H 0.96698 * 114.00146 * 66.47567 * 22 20 19 36 36 H 1.09003 * 109.88631 * 300.43966 * 23 17 14 37 37 H 1.08996 * 109.88413 * 61.60799 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6496 -1.5912 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1679 -1.5866 -4.8165 11 1 3.1475 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7118 -0.8790 2.9815 16 8 3.5793 1.1828 1.5749 17 7 1.9606 0.8089 3.3999 18 6 1.3783 2.1601 3.3065 19 6 0.0971 2.0984 4.1790 20 6 0.5619 1.1886 5.3466 21 1 -0.2874 0.6746 5.7966 22 8 1.2726 1.9476 6.3269 23 6 1.5014 0.1829 4.6483 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7097 1.1618 -3.4844 28 1 2.4157 -2.7377 0.9717 29 1 1.6237 -2.2853 2.5002 30 1 0.6904 -2.3003 0.9846 31 1 2.0736 2.9009 3.7014 32 1 1.1221 2.3922 2.2728 33 1 -0.7294 1.6426 3.6337 34 1 -0.1759 3.0897 4.5409 35 1 0.7271 2.5945 6.7949 36 1 0.9600 -0.7364 4.4249 37 1 2.3552 -0.0340 5.2902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:43 Heat of formation + Delta-G solvation = -144.151557 kcal Electronic energy + Delta-G solvation = -21419.548370 eV Core-core repulsion = 18129.864094 eV Total energy + Delta-G solvation = -3289.684276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.86393 -38.40707 -37.91043 -36.94657 -36.30840 -34.54558 -31.06980 -30.92140 -29.64282 -27.30243 -27.01707 -23.67283 -22.45553 -22.10133 -19.97638 -18.95421 -18.74659 -18.29373 -18.10386 -17.15382 -16.52597 -16.25333 -15.53198 -15.39495 -14.84861 -14.80313 -14.54968 -14.07177 -13.87129 -13.75421 -13.46521 -13.30275 -13.21372 -13.17831 -13.02150 -12.83223 -12.75490 -12.60532 -12.29369 -12.23428 -12.15801 -11.92459 -11.71203 -11.15919 -10.85109 -10.52661 -10.06621 -9.68618 -8.13455 -6.26836 -0.45074 1.40243 1.43319 1.53884 2.00635 2.41554 2.55124 3.12319 3.14926 3.35824 3.63323 3.76498 4.05937 4.15523 4.36208 4.52066 4.59930 4.65755 4.78949 4.82461 4.86407 4.95221 4.97779 5.01876 5.09423 5.13651 5.15186 5.22611 5.38209 5.60600 5.76901 5.86713 6.12982 6.29223 6.80612 7.00375 7.42171 8.90973 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.029849 B = 0.005845 C = 0.005482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.825548 B = 4788.865736 C = 5106.066896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.272 3.728 3 H 0.022 0.978 4 C -0.539 4.539 5 H 0.054 0.946 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.284 1.284 12 N -0.996 5.996 13 C 0.104 3.896 14 S 2.805 3.195 15 O -1.007 7.007 16 O -1.014 7.014 17 N -1.020 6.020 18 C 0.113 3.887 19 C -0.148 4.148 20 C 0.105 3.895 21 H 0.113 0.887 22 O -0.579 6.579 23 C 0.113 3.887 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.043 0.957 27 H 0.265 0.735 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.400 0.600 36 H 0.096 0.904 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.373 0.487 15.777 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.168 3.832 3 H 0.040 0.960 4 C -0.579 4.579 5 H 0.072 0.928 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.781 3.219 9 H -0.196 1.196 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.837 5.837 13 C -0.041 4.041 14 S 2.816 3.184 15 O -0.991 6.991 16 O -0.998 6.998 17 N -0.861 5.861 18 C -0.012 4.012 19 C -0.187 4.187 20 C 0.045 3.955 21 H 0.131 0.869 22 O -0.389 6.389 23 C -0.012 4.012 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.129 0.871 35 H 0.251 0.749 36 H 0.114 0.886 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.932 0.231 15.376 16.483 hybrid contribution -0.132 0.075 -1.112 1.123 sum -6.064 0.306 14.264 15.503 Atomic orbital electron populations 1.21890 0.96450 1.00315 1.00569 1.18432 0.92534 0.91176 0.81058 0.95996 1.21678 1.31811 1.12860 0.91557 0.92763 1.25627 0.95171 0.95731 1.01605 1.69972 1.37277 1.23631 1.24340 0.85546 0.78327 0.78547 0.79438 1.19605 1.19747 1.20998 1.57685 1.70053 1.21026 1.34985 1.21343 1.01783 0.80202 1.00778 1.00908 0.73469 0.72126 0.71879 1.93496 1.69844 1.60890 1.74889 1.93529 1.75257 1.57545 1.73488 1.58991 1.67146 1.25904 1.34109 1.22146 0.95827 0.82424 1.00762 1.23524 0.95937 1.02609 0.96642 1.22763 0.93213 0.91359 0.88195 0.86932 1.86517 1.42051 1.56100 1.54206 1.21994 0.98910 0.96557 0.83744 0.94363 0.91454 0.93754 0.92573 0.94170 0.90311 0.90035 0.91761 0.92145 0.88702 0.87051 0.74947 0.88637 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.84 8.95 71.98 0.64 -5.19 16 2 C 0.27 13.51 2.62 44.24 0.12 13.63 16 3 H 0.02 1.25 6.91 -2.39 -0.02 1.24 16 4 C -0.54 -29.63 8.37 25.60 0.21 -29.42 16 5 H 0.05 2.99 7.64 -2.91 -0.02 2.97 16 6 C 0.02 1.01 5.30 84.66 0.45 1.46 16 7 N -0.91 -51.24 11.32 21.45 0.24 -51.00 16 8 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 N -1.00 -42.04 3.12 -520.46 -1.62 -43.67 16 13 C 0.10 3.64 9.53 127.77 1.22 4.86 16 14 S 2.80 117.29 6.30 -56.49 -0.36 116.94 16 15 O -1.01 -43.94 16.79 -128.00 -2.15 -46.09 16 16 O -1.01 -51.20 16.28 -128.00 -2.08 -53.29 16 17 N -1.02 -32.44 3.75 -506.01 -1.90 -34.34 16 18 C 0.11 3.16 6.98 86.93 0.61 3.77 16 19 C -0.15 -2.52 6.82 32.06 0.22 -2.31 16 20 C 0.10 1.71 4.33 31.78 0.14 1.85 16 21 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 22 O -0.58 -9.92 13.38 -148.98 -1.99 -11.92 16 23 C 0.11 2.72 6.75 86.73 0.59 3.31 16 24 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.07 3.34 6.07 -2.39 -0.01 3.32 16 26 H 0.04 1.81 6.66 -2.38 -0.02 1.80 16 27 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 28 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.08 2.21 7.79 -2.39 -0.02 2.20 16 30 H 0.08 2.66 6.43 -2.38 -0.02 2.65 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.40 2.71 9.12 -74.06 -0.68 2.04 16 36 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.06 1.73 8.07 -2.39 -0.02 1.71 16 Total: -1.00 -73.99 313.61 -3.25 -77.25 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.40 Total: 8.54 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 4.19 Total: -8.04 kcal Atomic # 7 Polarization: -125.73 SS G_CDS: -3.28 Total: -129.01 kcal Atomic # 8 Polarization: -105.07 SS G_CDS: -6.23 Total: -111.29 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 117.29 SS G_CDS: -0.36 Total: 116.94 kcal Total: -73.99 -3.25 -77.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.906 kcal (2) G-P(sol) polarization free energy of solvation -73.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds