Wall clock time and date at job start Tue Mar 31 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.47428 * 125.65106 * 269.69580 * 17 14 12 19 19 C 1.55124 * 104.72353 * 155.81121 * 18 17 14 20 20 C 1.55157 * 101.48570 * 37.29695 * 19 18 17 21 21 H 1.09000 * 110.71975 * 205.96452 * 20 19 18 22 22 O 1.42908 * 110.71791 * 82.69260 * 20 19 18 23 23 C 1.47021 * 125.64981 * 89.99957 * 17 14 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 29 29 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 30 30 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 31 31 H 1.09003 * 110.36376 * 274.74445 * 18 17 14 32 32 H 1.08999 * 110.36104 * 37.06502 * 18 17 14 33 33 H 1.09002 * 111.19535 * 279.18980 * 19 18 17 34 34 H 1.09004 * 110.90520 * 155.27298 * 19 18 17 35 35 H 0.96696 * 113.99776 * 66.48032 * 22 20 19 36 36 H 1.09005 * 109.88087 * 300.44691 * 23 17 14 37 37 H 1.09000 * 109.88754 * 61.60837 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.2986 0.7741 -0.9059 19 6 6.4089 -0.1332 -0.3138 20 6 6.7785 -1.0093 -1.5399 21 1 7.1867 -1.9679 -1.2198 22 8 7.6998 -0.3247 -2.3912 23 6 5.4211 -1.2029 -2.2481 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 0.7375 -2.1444 -1.9993 29 1 2.4628 -2.5819 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 5.7385 1.6052 -1.4572 32 1 4.6494 1.1451 -0.1128 33 1 6.0243 -0.7452 0.5021 34 1 7.2625 0.4602 0.0138 35 1 8.5686 -0.1779 -1.9930 36 1 4.9856 -2.1596 -1.9597 37 1 5.5583 -1.1664 -3.3288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:45 Heat of formation + Delta-G solvation = -118.275246 kcal Electronic energy + Delta-G solvation = -21575.700406 eV Core-core repulsion = 18287.138210 eV Total energy + Delta-G solvation = -3288.562195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.80748 -36.67665 -36.13311 -35.30083 -35.22210 -32.62314 -29.92328 -29.09311 -28.52219 -25.50283 -25.20633 -22.38320 -21.13500 -20.68688 -18.49075 -17.51425 -17.27175 -16.78208 -16.42411 -15.61449 -15.07015 -14.66645 -14.34910 -13.76889 -13.44133 -13.18221 -12.94023 -12.79415 -12.68216 -12.11427 -11.99388 -11.80557 -11.58751 -11.47409 -11.39010 -11.23054 -11.12442 -10.99122 -10.90050 -10.72764 -10.43411 -10.23627 -10.10938 -9.99919 -9.32645 -8.67727 -8.52016 -7.96155 -6.12831 -4.21432 1.19549 3.19416 3.28277 3.29828 3.49767 4.05261 4.17130 4.31331 4.51621 4.69443 4.95195 5.14763 5.17605 5.42986 5.56638 5.64008 5.73869 5.86120 5.89075 6.01499 6.16713 6.26125 6.29476 6.44415 6.57993 6.71340 6.87012 6.90613 7.10881 7.48819 7.55737 7.60198 7.75756 8.02830 8.23395 8.82075 9.44808 10.92159 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.008137 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.625092 B = 3440.131286 C = 4396.382893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.795 3.205 15 O -0.994 6.994 16 O -0.976 6.976 17 N -1.017 6.017 18 C 0.130 3.870 19 C -0.160 4.160 20 C 0.093 3.907 21 H 0.074 0.926 22 O -0.560 6.560 23 C 0.132 3.868 24 H 0.012 0.988 25 H 0.092 0.908 26 H 0.032 0.968 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.377 0.623 36 H 0.075 0.925 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.278 -4.582 -4.465 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.806 3.194 15 O -0.978 6.978 16 O -0.960 6.960 17 N -0.856 5.856 18 C 0.004 3.996 19 C -0.200 4.200 20 C 0.033 3.967 21 H 0.092 0.908 22 O -0.366 6.366 23 C 0.006 3.994 24 H 0.031 0.969 25 H 0.111 0.889 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.224 0.776 36 H 0.093 0.907 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.283 -3.962 -5.534 11.511 hybrid contribution 0.839 -0.715 1.749 2.067 sum 10.122 -4.677 -3.785 11.775 Atomic orbital electron populations 1.22050 0.97938 0.99666 1.00762 1.18740 0.91923 0.92699 0.80284 0.92435 1.21408 1.31774 1.13061 0.90113 0.91886 1.24933 0.94998 0.94982 0.98972 1.69892 1.36195 1.22625 1.23701 0.86493 0.78654 0.79550 0.82945 1.19855 1.20997 1.21002 1.57830 1.63998 1.21441 1.39971 1.21175 0.98910 0.82059 1.01746 1.01476 0.71548 0.73406 0.73004 1.93531 1.85805 1.76436 1.42068 1.93578 1.83463 1.32152 1.86787 1.59186 1.28990 1.36023 1.61397 1.21892 0.93273 0.92234 0.92188 1.23505 0.99261 0.99181 0.98014 1.22796 0.89622 0.94463 0.89814 0.90833 1.86551 1.25965 1.80195 1.43844 1.21566 0.88250 0.89893 0.99740 0.96876 0.88915 0.94871 0.92676 0.93863 0.93360 0.90236 0.91771 0.89667 0.89195 0.90066 0.77601 0.90696 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.27 6.48 2.62 -69.08 -0.18 6.30 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -13.14 7.99 -34.44 -0.28 -13.42 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -23.98 11.32 55.43 0.63 -23.35 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.99 -20.85 3.12 -115.85 -0.36 -21.21 16 13 C 0.11 1.94 9.29 59.85 0.56 2.49 16 14 S 2.80 57.73 6.30 -107.50 -0.68 57.05 16 15 O -0.99 -21.36 16.79 -57.17 -0.96 -22.32 16 16 O -0.98 -23.12 16.28 -57.17 -0.93 -24.05 16 17 N -1.02 -17.68 3.75 -111.29 -0.42 -18.10 16 18 C 0.13 2.06 6.98 -2.41 -0.02 2.05 16 19 C -0.16 -1.95 6.82 -24.47 -0.17 -2.12 16 20 C 0.09 1.07 4.33 -24.90 -0.11 0.96 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 22 O -0.56 -6.27 13.38 -35.23 -0.47 -6.74 16 23 C 0.13 1.89 6.75 -3.07 -0.02 1.87 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 27 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.75 7.79 -51.93 -0.40 0.35 16 30 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.38 2.40 9.12 45.56 0.42 2.81 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -31.94 314.30 -8.20 -40.13 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -4.75 Total: 2.43 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.03 Total: -3.44 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.15 Total: -62.65 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.36 Total: -53.12 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 57.73 SS G_CDS: -0.68 Total: 57.05 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.94 -8.20 -40.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.142 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds