Wall clock time and date at job start Tue Mar 31 2020 01:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47363 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47233 * 120.00158 * 8 6 4 11 11 H 1.48508 * 109.46883 * 239.99963 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.46505 * 120.00341 * 300.00268 * 12 2 1 14 14 S 1.65599 * 119.99944 * 120.00026 * 12 2 1 15 15 O 1.42101 * 106.40626 * 203.54417 * 14 12 2 16 16 O 1.42101 * 106.40278 * 336.46186 * 14 12 2 17 17 N 1.65598 * 107.22076 * 90.00262 * 14 12 2 18 18 C 1.47428 * 125.65106 * 269.69580 * 17 14 12 19 19 C 1.55124 * 104.72353 * 155.81121 * 18 17 14 20 20 C 1.55157 * 101.48570 * 37.29695 * 19 18 17 21 21 H 1.09000 * 110.71975 * 205.96452 * 20 19 18 22 22 O 1.42908 * 110.71791 * 82.69260 * 20 19 18 23 23 C 1.47021 * 125.64981 * 89.99957 * 17 14 12 24 24 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 25 25 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 26 26 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 27 27 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 28 28 H 1.09005 * 109.46851 * 89.99998 * 13 12 2 29 29 H 1.08997 * 109.47129 * 209.99273 * 13 12 2 30 30 H 1.08993 * 109.46804 * 329.99912 * 13 12 2 31 31 H 1.09003 * 110.36376 * 274.74445 * 18 17 14 32 32 H 1.08999 * 110.36104 * 37.06502 * 18 17 14 33 33 H 1.09002 * 111.19535 * 279.18980 * 19 18 17 34 34 H 1.09004 * 110.90520 * 155.27298 * 19 18 17 35 35 H 0.96696 * 113.99776 * 66.48032 * 22 20 19 36 36 H 1.09005 * 109.88087 * 300.44691 * 23 17 14 37 37 H 1.09000 * 109.88754 * 61.60837 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.1474 -2.2863 3.6038 10 1 3.1473 -0.1857 4.8160 11 1 1.1678 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1141 -2.2862 15 8 2.8227 -0.5646 -3.5259 16 8 2.6904 1.4972 -2.1193 17 7 4.5437 -0.1043 -1.8180 18 6 5.2986 0.7741 -0.9059 19 6 6.4089 -0.1332 -0.3138 20 6 6.7785 -1.0093 -1.5399 21 1 7.1867 -1.9679 -1.2198 22 8 7.6998 -0.3247 -2.3912 23 6 5.4211 -1.2029 -2.2481 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.7082 1.1609 3.4844 28 1 0.7375 -2.1444 -1.9993 29 1 2.4628 -2.5819 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 5.7385 1.6052 -1.4572 32 1 4.6494 1.1451 -0.1128 33 1 6.0243 -0.7452 0.5021 34 1 7.2625 0.4602 0.0138 35 1 8.5686 -0.1779 -1.9930 36 1 4.9856 -2.1596 -1.9597 37 1 5.5583 -1.1664 -3.3288 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976608.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:45 Heat of formation + Delta-G solvation = -144.356017 kcal Electronic energy + Delta-G solvation = -21576.831353 eV Core-core repulsion = 18287.138210 eV Total energy + Delta-G solvation = -3289.693142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.84680 -38.40888 -37.89829 -36.96177 -36.29498 -34.50934 -31.07324 -30.91512 -29.63202 -27.26348 -27.01347 -23.63666 -22.52841 -22.09842 -19.99952 -18.85472 -18.62974 -18.32150 -18.19241 -17.15017 -16.51086 -16.23589 -15.53762 -15.29705 -14.96262 -14.66455 -14.50242 -14.06564 -13.86753 -13.71927 -13.51001 -13.31943 -13.21917 -13.20184 -13.00014 -12.80952 -12.73008 -12.67409 -12.28451 -12.17889 -12.14218 -11.91132 -11.71083 -11.19526 -10.85446 -10.50407 -10.03777 -9.66598 -8.08196 -6.23458 -0.41334 1.45639 1.48537 1.58633 1.96584 2.46054 2.54156 3.12997 3.20374 3.35305 3.64816 3.76700 4.08285 4.16845 4.37446 4.53892 4.61368 4.68005 4.77046 4.83784 4.87012 4.93363 4.94655 4.99324 5.10736 5.16676 5.22288 5.24938 5.38534 5.61195 5.72108 5.85614 6.09805 6.28482 6.85915 6.99014 7.46289 8.96841 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.008137 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.625092 B = 3440.131286 C = 4396.382893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.272 3.728 3 H 0.022 0.978 4 C -0.525 4.525 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.961 3.039 9 H -0.260 1.260 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.996 5.996 13 C 0.101 3.899 14 S 2.807 3.193 15 O -1.004 7.004 16 O -1.015 7.015 17 N -1.019 6.019 18 C 0.118 3.882 19 C -0.150 4.150 20 C 0.106 3.894 21 H 0.110 0.890 22 O -0.577 6.577 23 C 0.115 3.885 24 H 0.016 0.984 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.399 0.601 36 H 0.092 0.908 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.325 -6.625 -4.041 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.168 3.832 3 H 0.039 0.961 4 C -0.564 4.564 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.818 3.182 15 O -0.988 6.988 16 O -0.999 6.999 17 N -0.860 5.860 18 C -0.007 4.007 19 C -0.189 4.189 20 C 0.046 3.954 21 H 0.128 0.872 22 O -0.386 6.386 23 C -0.010 4.010 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.250 0.750 36 H 0.110 0.890 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.347 -6.027 -5.131 13.835 hybrid contribution 0.244 -0.050 1.538 1.558 sum 11.591 -6.077 -3.593 13.572 Atomic orbital electron populations 1.21948 0.97954 1.00103 0.99852 1.18426 0.91903 0.91323 0.81553 0.96054 1.21612 1.31437 1.13009 0.90344 0.91055 1.25721 0.95203 0.95595 1.01932 1.70035 1.37492 1.24126 1.24256 0.85462 0.78000 0.78705 0.79139 1.18335 1.21052 1.21245 1.57716 1.64684 1.22596 1.38728 1.21391 1.00363 0.80405 1.02308 1.00854 0.72198 0.72407 0.72740 1.93506 1.86411 1.76357 1.42570 1.93520 1.84533 1.34647 1.87238 1.58915 1.28133 1.37350 1.61610 1.22064 0.93911 0.93251 0.91463 1.23502 0.98539 0.98752 0.98115 1.22731 0.88377 0.95809 0.88495 0.87211 1.86506 1.27382 1.80316 1.44413 1.21949 0.89733 0.89460 0.99839 0.96507 0.91107 0.93620 0.92783 0.93090 0.90787 0.90184 0.91598 0.92499 0.89416 0.87174 0.74997 0.89033 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.75 8.97 71.98 0.65 -6.10 16 2 C 0.27 13.46 2.62 44.25 0.12 13.58 16 3 H 0.02 1.22 6.91 -2.39 -0.02 1.20 16 4 C -0.52 -26.15 7.99 25.60 0.20 -25.94 16 5 H 0.07 3.37 7.33 -2.91 -0.02 3.35 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -50.64 11.32 21.45 0.24 -50.40 16 8 Si 0.96 40.18 29.54 68.60 2.03 42.21 16 9 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 10 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -12.02 7.11 99.48 0.71 -11.31 16 12 N -1.00 -41.75 3.12 -520.44 -1.62 -43.38 16 13 C 0.10 3.47 9.29 127.77 1.19 4.66 16 14 S 2.81 116.79 6.30 -56.49 -0.36 116.44 16 15 O -1.00 -42.69 16.79 -128.00 -2.15 -44.84 16 16 O -1.01 -49.92 16.28 -128.00 -2.08 -52.01 16 17 N -1.02 -34.75 3.75 -506.02 -1.90 -36.65 16 18 C 0.12 3.71 6.98 86.93 0.61 4.32 16 19 C -0.15 -3.22 6.82 32.06 0.22 -3.00 16 20 C 0.11 2.05 4.33 31.78 0.14 2.18 16 21 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 22 O -0.58 -10.97 13.38 -148.98 -1.99 -12.97 16 23 C 0.12 3.04 6.75 86.73 0.59 3.63 16 24 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 26 H 0.04 2.04 7.67 -2.38 -0.02 2.02 16 27 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 28 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 30 H 0.08 2.74 7.02 -2.39 -0.02 2.73 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.40 3.50 9.12 -74.06 -0.68 2.82 16 36 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.07 1.91 8.07 -2.39 -0.02 1.89 16 Total: -1.00 -69.24 314.30 -3.29 -72.54 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.39 Total: 14.53 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 4.15 Total: -5.47 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -3.28 Total: -130.43 kcal Atomic # 8 Polarization: -103.59 SS G_CDS: -6.23 Total: -109.81 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Atomic # 16 Polarization: 116.79 SS G_CDS: -0.36 Total: 116.44 kcal Total: -69.24 -3.29 -72.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976608.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.820 kcal (2) G-P(sol) polarization free energy of solvation -69.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds