Wall clock time and date at job start Tue Mar 31 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.46498 * 119.99673 * 300.00431 * 12 2 1 14 14 S 1.65593 * 119.99939 * 119.99951 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.47424 * 125.64639 * 269.69106 * 17 14 12 19 19 C 1.55128 * 104.72274 * 155.81769 * 18 17 14 20 20 C 1.55164 * 101.48608 * 37.29483 * 19 18 17 21 21 H 1.08998 * 110.72297 * 82.69255 * 20 19 18 22 22 O 1.42898 * 110.87368 * 205.90136 * 20 19 18 23 23 C 1.47021 * 125.64886 * 90.00142 * 17 14 12 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 29 29 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 30 30 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 31 31 H 1.09003 * 110.36473 * 274.74249 * 18 17 14 32 32 H 1.08996 * 110.36754 * 37.06764 * 18 17 14 33 33 H 1.08999 * 111.19129 * 279.19493 * 19 18 17 34 34 H 1.08998 * 110.94325 * 155.28135 * 19 18 17 35 35 H 0.96696 * 113.99987 * 293.60800 * 22 20 19 36 36 H 1.09006 * 109.88036 * 300.43452 * 23 17 14 37 37 H 1.08998 * 109.88763 * 61.44679 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8230 -0.5646 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.2986 0.7742 -0.9057 19 6 6.4089 -0.1330 -0.3136 20 6 6.7786 -1.0092 -1.5397 21 1 7.4813 -0.4870 -2.1890 22 8 7.3157 -2.2663 -1.1237 23 6 5.4212 -1.2028 -2.2479 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7086 1.1614 3.4844 28 1 0.7377 -2.1444 -1.9993 29 1 2.4630 -2.5819 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 5.7385 1.6053 -1.4570 32 1 4.6494 1.1452 -0.1127 33 1 6.0243 -0.7451 0.5022 34 1 7.2627 0.4598 0.0145 35 1 8.1686 -2.1999 -0.6730 36 1 4.9858 -2.1596 -1.9595 37 1 5.5563 -1.1680 -3.3290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:47 Heat of formation + Delta-G solvation = -118.177168 kcal Electronic energy + Delta-G solvation = -21568.409630 eV Core-core repulsion = 18279.851688 eV Total energy + Delta-G solvation = -3288.557942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.74304 -36.71205 -36.12830 -35.56827 -35.26293 -32.60888 -29.96519 -29.08071 -28.38045 -25.49276 -25.18889 -22.33468 -21.18894 -20.68584 -18.57439 -17.74148 -17.29480 -16.72362 -16.41178 -15.54362 -14.83485 -14.56905 -14.24842 -13.96315 -13.68741 -13.36368 -13.11301 -12.81660 -12.64491 -12.04976 -11.95590 -11.77292 -11.62866 -11.42470 -11.39450 -11.21653 -11.16776 -10.97881 -10.90590 -10.76134 -10.43225 -10.21997 -10.09371 -9.98360 -9.33053 -8.73041 -8.49964 -7.95898 -6.11194 -4.19620 1.15866 3.22207 3.30136 3.32148 3.42691 4.00033 4.14069 4.33749 4.63203 4.66227 4.98564 5.03569 5.19104 5.39192 5.55096 5.59952 5.71589 5.80866 5.90969 6.00081 6.19000 6.25819 6.29410 6.41632 6.56309 6.70806 6.87715 6.90281 7.11115 7.48552 7.53610 7.61476 7.76533 8.03719 8.24688 8.84016 9.46704 10.93718 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.008644 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.447030 B = 3238.497592 C = 4269.163093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.107 3.893 14 S 2.795 3.205 15 O -0.993 6.993 16 O -0.975 6.975 17 N -1.017 6.017 18 C 0.125 3.875 19 C -0.162 4.162 20 C 0.095 3.905 21 H 0.071 0.929 22 O -0.560 6.560 23 C 0.131 3.869 24 H 0.012 0.988 25 H 0.032 0.968 26 H 0.093 0.907 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.380 0.620 36 H 0.074 0.926 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -3.069 -5.415 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.806 3.194 15 O -0.977 6.977 16 O -0.959 6.959 17 N -0.856 5.856 18 C 0.000 4.000 19 C -0.201 4.201 20 C 0.035 3.965 21 H 0.088 0.912 22 O -0.365 6.365 23 C 0.005 3.995 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.227 0.773 36 H 0.092 0.908 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.459 -2.659 -6.347 11.698 hybrid contribution 0.917 -0.468 1.589 1.893 sum 10.376 -3.126 -4.758 11.835 Atomic orbital electron populations 1.22049 0.97906 0.99692 1.00746 1.18742 0.91939 0.92645 0.80289 0.92463 1.21379 1.31768 1.13117 0.90111 0.91904 1.24923 0.94961 0.94988 0.98956 1.69883 1.36197 1.22631 1.23797 0.86538 0.78554 0.80006 0.82522 1.20683 1.21216 1.19928 1.57800 1.63871 1.21500 1.39944 1.21183 0.98911 0.81976 1.01835 1.01497 0.71501 0.73393 0.73047 1.93534 1.85727 1.76404 1.42079 1.93580 1.83359 1.32127 1.86835 1.59209 1.29175 1.35841 1.61388 1.21883 0.93577 0.92009 0.92564 1.23528 0.98912 0.98882 0.98796 1.22799 0.94493 0.84262 0.94955 0.91157 1.86493 1.40744 1.29691 1.79582 1.21364 0.89390 0.90679 0.98085 0.96893 0.94848 0.88896 0.92645 0.93839 0.93281 0.90201 0.91731 0.89280 0.89085 0.90226 0.77292 0.90757 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.27 6.53 2.62 -69.08 -0.18 6.35 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.35 7.99 -34.44 -0.28 -13.63 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 N -0.99 -21.01 3.12 -115.85 -0.36 -21.38 16 13 C 0.11 1.99 9.28 59.85 0.56 2.54 16 14 S 2.80 56.88 6.30 -107.50 -0.68 56.20 16 15 O -0.99 -20.99 16.79 -57.17 -0.96 -21.95 16 16 O -0.97 -22.53 16.28 -57.17 -0.93 -23.46 16 17 N -1.02 -17.28 3.75 -111.29 -0.42 -17.70 16 18 C 0.13 1.90 6.99 -2.41 -0.02 1.88 16 19 C -0.16 -1.99 6.83 -24.46 -0.17 -2.16 16 20 C 0.10 1.11 4.32 -24.89 -0.11 1.00 16 21 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 22 O -0.56 -6.36 13.39 -35.23 -0.47 -6.83 16 23 C 0.13 1.91 6.76 -3.06 -0.02 1.88 16 24 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 27 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.80 7.79 -51.92 -0.40 0.40 16 30 H 0.08 1.50 7.02 -51.93 -0.36 1.13 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.38 2.51 9.12 45.56 0.42 2.92 16 36 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -31.64 314.31 -8.20 -39.83 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.75 Total: 2.50 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 0.03 Total: -3.67 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.15 Total: -62.57 kcal Atomic # 8 Polarization: -49.88 SS G_CDS: -2.36 Total: -52.24 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.68 Total: 56.20 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.64 -8.20 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.343 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds