Wall clock time and date at job start Tue Mar 31 2020 01:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 H 1.07996 * 119.99751 * 120.00006 * 4 2 1 6 6 C 1.37877 * 120.00001 * 300.00469 * 4 2 1 7 7 N 1.31517 * 120.00094 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99955 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47171 * 89.99544 * 8 6 4 10 10 H 1.48500 * 109.46632 * 209.99795 * 8 6 4 11 11 H 1.48494 * 109.47053 * 329.99231 * 8 6 4 12 12 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 13 13 C 1.46498 * 119.99673 * 300.00431 * 12 2 1 14 14 S 1.65593 * 119.99939 * 119.99951 * 12 2 1 15 15 O 1.42101 * 106.40455 * 203.53915 * 14 12 2 16 16 O 1.42093 * 106.40554 * 336.46252 * 14 12 2 17 17 N 1.65604 * 107.21648 * 90.00264 * 14 12 2 18 18 C 1.47424 * 125.64639 * 269.69106 * 17 14 12 19 19 C 1.55128 * 104.72274 * 155.81769 * 18 17 14 20 20 C 1.55164 * 101.48608 * 37.29483 * 19 18 17 21 21 H 1.08998 * 110.72297 * 82.69255 * 20 19 18 22 22 O 1.42898 * 110.87368 * 205.90136 * 20 19 18 23 23 C 1.47021 * 125.64886 * 90.00142 * 17 14 12 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 0.97000 * 120.00333 * 179.97438 * 7 6 4 28 28 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 29 29 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 30 30 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 31 31 H 1.09003 * 110.36473 * 274.74249 * 18 17 14 32 32 H 1.08996 * 110.36754 * 37.06764 * 18 17 14 33 33 H 1.08999 * 111.19129 * 279.19493 * 19 18 17 34 34 H 1.08998 * 110.94325 * 155.28135 * 19 18 17 35 35 H 0.96696 * 113.99987 * 293.60800 * 22 20 19 36 36 H 1.09006 * 109.88036 * 300.43452 * 23 17 14 37 37 H 1.08998 * 109.88763 * 61.44679 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5440 4.4119 10 1 1.3442 -0.9490 5.1122 11 1 2.4878 -2.5653 3.7123 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4280 14 16 2.9705 0.1142 -2.2862 15 8 2.8230 -0.5646 -3.5258 16 8 2.6905 1.4972 -2.1192 17 7 4.5438 -0.1043 -1.8179 18 6 5.2986 0.7742 -0.9057 19 6 6.4089 -0.1330 -0.3136 20 6 6.7786 -1.0092 -1.5397 21 1 7.4813 -0.4870 -2.1890 22 8 7.3157 -2.2663 -1.1237 23 6 5.4212 -1.2028 -2.2479 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 0.7086 1.1614 3.4844 28 1 0.7377 -2.1444 -1.9993 29 1 2.4630 -2.5819 -1.9863 30 1 1.5295 -2.5969 -0.4708 31 1 5.7385 1.6053 -1.4570 32 1 4.6494 1.1452 -0.1127 33 1 6.0243 -0.7451 0.5022 34 1 7.2627 0.4598 0.0145 35 1 8.1686 -2.1999 -0.6730 36 1 4.9858 -2.1596 -1.9595 37 1 5.5563 -1.1680 -3.3290 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976930.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:47 Heat of formation + Delta-G solvation = -143.888605 kcal Electronic energy + Delta-G solvation = -21569.524562 eV Core-core repulsion = 18279.851688 eV Total energy + Delta-G solvation = -3289.672874 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.79516 -38.41507 -37.91264 -36.97206 -36.55776 -34.52850 -31.12335 -30.92991 -29.48650 -27.27429 -27.03824 -23.57177 -22.53639 -22.17387 -20.03963 -18.90560 -18.80027 -18.34252 -18.18620 -17.19213 -16.51735 -15.88861 -15.39905 -15.30533 -14.98474 -14.89488 -14.57516 -14.49426 -13.92292 -13.71415 -13.51421 -13.34562 -13.21843 -13.19932 -13.01096 -12.77714 -12.72342 -12.54183 -12.40982 -12.21301 -12.15594 -11.93774 -11.70045 -11.22639 -10.87463 -10.50791 -10.06887 -9.68138 -8.10070 -6.25015 -0.42681 1.43887 1.46234 1.55386 1.91183 2.44145 2.51243 3.02924 3.18033 3.49351 3.56045 3.75337 4.03411 4.17531 4.30853 4.53404 4.55548 4.65718 4.74350 4.78031 4.85340 4.91431 4.93785 4.95371 5.08175 5.14588 5.21305 5.26671 5.36842 5.59397 5.71013 5.83414 6.08430 6.27199 6.83585 6.94115 7.44526 8.94507 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.015591 B = 0.008644 C = 0.006557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.447030 B = 3238.497592 C = 4269.163093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.527 4.527 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 0.958 3.042 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.268 1.268 12 N -0.998 5.998 13 C 0.102 3.898 14 S 2.808 3.192 15 O -1.002 7.002 16 O -1.008 7.008 17 N -1.018 6.018 18 C 0.114 3.886 19 C -0.153 4.153 20 C 0.108 3.892 21 H 0.104 0.896 22 O -0.575 6.575 23 C 0.117 3.883 24 H 0.018 0.982 25 H 0.043 0.957 26 H 0.071 0.929 27 H 0.264 0.736 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.402 0.598 36 H 0.064 0.936 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.590 -4.229 -5.448 14.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.566 4.566 5 H 0.082 0.918 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.784 3.216 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.193 1.193 12 N -0.839 5.839 13 C -0.043 4.043 14 S 2.819 3.181 15 O -0.986 6.986 16 O -0.993 6.993 17 N -0.859 5.859 18 C -0.011 4.011 19 C -0.192 4.192 20 C 0.048 3.952 21 H 0.122 0.878 22 O -0.384 6.384 23 C -0.008 4.008 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.253 0.747 36 H 0.082 0.918 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.573 -3.839 -6.389 13.765 hybrid contribution 0.309 -0.118 1.551 1.586 sum 11.881 -3.958 -4.838 13.425 Atomic orbital electron populations 1.21941 0.97828 1.00056 0.99984 1.18424 0.91999 0.91339 0.81397 0.95701 1.21547 1.31503 1.12975 0.90621 0.91760 1.25662 0.95151 0.95599 1.01724 1.70013 1.37296 1.23930 1.24354 0.85561 0.78009 0.79107 0.78953 1.20069 1.21306 1.19263 1.57735 1.64816 1.22490 1.38858 1.21351 1.00291 0.80579 1.02116 1.00867 0.72051 0.72451 0.72710 1.93512 1.86300 1.76343 1.42462 1.93530 1.84337 1.34210 1.87218 1.58904 1.28316 1.37043 1.61666 1.22117 0.93799 0.93208 0.91954 1.23500 0.98799 0.98508 0.98353 1.22714 0.93536 0.84420 0.94530 0.87794 1.86444 1.42431 1.29473 1.80005 1.21666 0.90663 0.89211 0.99295 0.96260 0.93801 0.91033 0.92682 0.92773 0.91215 0.90588 0.89468 0.92396 0.91276 0.86604 0.74725 0.91791 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.75 8.97 71.98 0.65 -6.11 16 2 C 0.27 13.61 2.62 44.25 0.12 13.73 16 3 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 4 C -0.53 -27.02 7.99 25.60 0.20 -26.81 16 5 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16 6 C 0.02 0.96 5.30 84.65 0.45 1.41 16 7 N -0.92 -50.72 11.32 21.45 0.24 -50.48 16 8 Si 0.96 41.29 29.54 68.60 2.03 43.31 16 9 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 N -1.00 -42.59 3.12 -520.43 -1.62 -44.21 16 13 C 0.10 3.70 9.28 127.77 1.19 4.89 16 14 S 2.81 114.61 6.30 -56.49 -0.36 114.26 16 15 O -1.00 -41.70 16.79 -128.00 -2.15 -43.84 16 16 O -1.01 -47.75 16.28 -128.00 -2.08 -49.84 16 17 N -1.02 -33.79 3.75 -506.01 -1.90 -35.69 16 18 C 0.11 3.36 6.99 86.93 0.61 3.96 16 19 C -0.15 -3.37 6.83 32.07 0.22 -3.15 16 20 C 0.11 2.16 4.32 31.79 0.14 2.30 16 21 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 22 O -0.57 -11.13 13.39 -148.98 -2.00 -13.13 16 23 C 0.12 3.17 6.76 86.73 0.59 3.76 16 24 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.04 1.98 7.67 -2.39 -0.02 1.96 16 26 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 27 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.20 7.79 -2.38 -0.02 2.19 16 30 H 0.08 2.79 7.02 -2.39 -0.02 2.78 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.40 3.76 9.12 -74.06 -0.68 3.08 16 36 H 0.06 1.85 8.06 -2.38 -0.02 1.83 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -68.11 314.31 -3.29 -71.41 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.39 Total: 14.22 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: 4.15 Total: -6.02 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -3.28 Total: -130.37 kcal Atomic # 8 Polarization: -100.58 SS G_CDS: -6.23 Total: -106.81 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 114.61 SS G_CDS: -0.36 Total: 114.26 kcal Total: -68.11 -3.29 -71.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976930.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.480 kcal (2) G-P(sol) polarization free energy of solvation -68.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds