Wall clock time and date at job start Tue Mar 31 2020 01:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46739 * 2 1 4 4 C 1.50699 * 109.46805 * 240.00017 * 2 1 3 5 5 H 1.08010 * 119.99609 * 239.99550 * 4 2 1 6 6 C 1.37870 * 120.00516 * 59.99890 * 4 2 1 7 7 N 1.31513 * 120.00096 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00175 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47039 * 120.00162 * 8 6 4 11 11 H 1.48504 * 109.46861 * 240.00121 * 8 6 4 12 12 N 1.46493 * 109.46836 * 119.99861 * 2 1 3 13 13 C 1.46494 * 120.00444 * 59.72574 * 12 2 1 14 14 S 1.65608 * 119.99916 * 239.99895 * 12 2 1 15 15 O 1.42100 * 106.40059 * 23.26834 * 14 12 2 16 16 O 1.42096 * 106.40050 * 156.18867 * 14 12 2 17 17 N 1.65599 * 107.21718 * 269.72928 * 14 12 2 18 18 C 1.47430 * 125.64634 * 269.69173 * 17 14 12 19 19 C 1.55130 * 104.72253 * 155.81951 * 18 17 14 20 20 C 1.55159 * 101.48543 * 37.29234 * 19 18 17 21 21 H 1.08998 * 110.71781 * 82.69606 * 20 19 18 22 22 O 1.42901 * 110.87150 * 205.89649 * 20 19 18 23 23 C 1.47021 * 125.64930 * 90.00066 * 17 14 12 24 24 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47559 * 300.00236 * 1 2 3 26 26 H 1.09007 * 109.47281 * 60.00494 * 1 2 3 27 27 H 0.96996 * 120.00861 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47693 * 270.27497 * 13 12 2 29 29 H 1.09003 * 109.47006 * 30.27410 * 13 12 2 30 30 H 1.09004 * 109.47665 * 150.27102 * 13 12 2 31 31 H 1.08998 * 110.36241 * 274.74505 * 18 17 14 32 32 H 1.08994 * 110.36756 * 37.06935 * 18 17 14 33 33 H 1.09003 * 111.18987 * 279.18768 * 19 18 17 34 34 H 1.08997 * 110.93552 * 155.28828 * 19 18 17 35 35 H 0.96702 * 113.99839 * 293.61651 * 22 20 19 36 36 H 1.09002 * 109.87847 * 300.43242 * 23 17 14 37 37 H 1.08997 * 109.88485 * 61.45065 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 3.1483 -2.2858 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0182 -0.6906 1.1962 13 6 1.6594 -2.0913 1.4311 14 16 2.9703 0.1143 2.2863 15 8 2.6950 1.4978 2.1148 16 8 2.8177 -0.5606 3.5274 17 7 4.5441 -0.1104 1.8223 18 6 5.4213 -1.2100 2.2636 19 6 6.4837 -1.3416 1.1409 20 6 6.7071 0.1435 0.7513 21 1 7.4127 0.6190 1.4326 22 8 7.1598 0.2529 -0.5997 23 6 5.2997 0.7573 0.9070 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 0.7094 1.1617 -3.4844 28 1 0.7311 -2.1381 2.0004 29 1 1.5251 -2.5973 0.4750 30 1 2.4550 -2.5810 1.9927 31 1 5.8970 -0.9585 3.2116 32 1 4.8524 -2.1349 2.3573 33 1 6.0966 -1.9130 0.2972 34 1 7.4017 -1.7875 1.5237 35 1 8.0398 -0.1182 -0.7509 36 1 4.8027 0.7956 -0.0623 37 1 5.3748 1.7611 1.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407976932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:49 Heat of formation + Delta-G solvation = -117.179289 kcal Electronic energy + Delta-G solvation = -21608.608383 eV Core-core repulsion = 18320.093712 eV Total energy + Delta-G solvation = -3288.514671 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.71504 -36.71245 -36.12111 -35.51580 -35.26115 -32.58019 -29.97875 -29.07941 -28.34416 -25.50767 -25.15822 -22.35344 -21.17803 -20.65868 -18.57094 -17.69245 -17.28514 -16.72192 -16.41576 -15.43996 -14.96141 -14.48496 -14.21968 -13.95000 -13.61629 -13.37066 -13.15786 -12.77998 -12.58474 -12.08040 -11.95442 -11.77921 -11.65551 -11.46851 -11.38230 -11.20952 -11.18612 -10.95297 -10.84819 -10.69795 -10.39994 -10.20342 -10.07276 -9.94851 -9.30207 -8.71176 -8.46342 -7.94789 -6.07333 -4.15584 1.15753 3.26326 3.34263 3.36223 3.43693 4.04905 4.15484 4.38130 4.59716 4.67241 4.98747 5.06086 5.23607 5.31538 5.51110 5.52194 5.68146 5.74682 5.98228 6.09382 6.14980 6.17447 6.28893 6.42670 6.56265 6.70676 6.88557 6.91413 7.12976 7.49754 7.64108 7.65332 7.79472 8.06338 8.27460 8.87500 9.50931 10.97790 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.009246 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.521505 B = 3027.649865 C = 4171.404997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.523 4.523 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.283 1.283 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.795 3.205 15 O -0.975 6.975 16 O -0.993 6.993 17 N -1.017 6.017 18 C 0.127 3.873 19 C -0.164 4.164 20 C 0.097 3.903 21 H 0.069 0.931 22 O -0.554 6.554 23 C 0.127 3.873 24 H 0.032 0.968 25 H 0.012 0.988 26 H 0.093 0.907 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.377 0.623 36 H 0.091 0.909 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.598 -4.704 6.517 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.831 5.831 13 C -0.039 4.039 14 S 2.806 3.194 15 O -0.959 6.959 16 O -0.977 6.977 17 N -0.856 5.856 18 C 0.001 3.999 19 C -0.203 4.203 20 C 0.037 3.963 21 H 0.087 0.913 22 O -0.358 6.358 23 C 0.001 3.999 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.111 0.889 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.224 0.776 36 H 0.109 0.891 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.544 -3.770 7.092 12.473 hybrid contribution 0.950 -1.039 -1.180 1.837 sum 10.493 -4.809 5.913 12.969 Atomic orbital electron populations 1.22054 0.97923 0.99649 1.00761 1.18750 0.91891 0.92731 0.80255 0.92397 1.21385 1.31688 1.13091 0.90102 0.91933 1.24914 0.94913 0.94966 0.98989 1.69885 1.36329 1.22604 1.23687 0.86469 0.78516 0.79625 0.82912 1.19864 1.21105 1.20931 1.57799 1.63816 1.21566 1.39943 1.21173 0.98813 0.82117 1.01763 1.01494 0.71508 0.73418 0.73022 1.93579 1.83464 1.32099 1.86768 1.93536 1.85665 1.76619 1.41916 1.59197 1.29231 1.36670 1.60524 1.21824 0.91651 0.89856 0.96570 1.23541 0.99175 0.97803 0.99760 1.22758 0.95444 0.94584 0.83534 0.91308 1.86595 1.38140 1.83931 1.27175 1.21448 0.90681 0.92605 0.95161 0.94879 0.96917 0.88868 0.92712 0.93850 0.90212 0.93415 0.91601 0.90787 0.89293 0.90315 0.77614 0.89098 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.97 37.16 0.33 -3.15 16 2 C 0.27 6.62 2.62 -69.09 -0.18 6.43 16 3 H 0.06 1.60 6.90 -51.93 -0.36 1.24 16 4 C -0.52 -13.57 7.99 -34.44 -0.28 -13.84 16 5 H 0.06 1.59 7.35 -52.48 -0.39 1.21 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.61 11.32 55.43 0.63 -23.98 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.99 -21.03 3.12 -115.86 -0.36 -21.39 16 13 C 0.11 1.96 9.27 59.84 0.56 2.51 16 14 S 2.79 56.92 6.31 -107.50 -0.68 56.24 16 15 O -0.97 -22.87 16.28 -57.17 -0.93 -23.80 16 16 O -0.99 -20.68 16.79 -57.17 -0.96 -21.64 16 17 N -1.02 -17.29 3.75 -111.29 -0.42 -17.70 16 18 C 0.13 1.67 6.99 -2.41 -0.02 1.66 16 19 C -0.16 -1.84 6.83 -24.46 -0.17 -2.01 16 20 C 0.10 1.21 4.32 -24.89 -0.11 1.11 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 O -0.55 -7.20 13.40 -35.23 -0.47 -7.67 16 23 C 0.13 2.09 6.76 -3.06 -0.02 2.07 16 24 H 0.03 0.74 7.66 -51.93 -0.40 0.34 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.09 2.44 6.07 -51.92 -0.32 2.13 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.47 7.04 -51.93 -0.37 1.10 16 30 H 0.05 0.75 7.79 -51.93 -0.40 0.34 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.38 2.89 9.12 45.56 0.42 3.31 16 36 H 0.09 1.77 8.06 -51.93 -0.42 1.35 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -32.52 314.31 -8.20 -40.72 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.75 Total: 2.36 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.03 Total: -3.60 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.15 Total: -63.07 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -2.36 Total: -53.11 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 56.92 SS G_CDS: -0.68 Total: 56.24 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.52 -8.20 -40.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.463 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds