Wall clock time and date at job start Tue Mar 31 2020 01:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46739 * 2 1 4 4 C 1.50699 * 109.46805 * 240.00017 * 2 1 3 5 5 H 1.08010 * 119.99609 * 239.99550 * 4 2 1 6 6 C 1.37870 * 120.00516 * 59.99890 * 4 2 1 7 7 N 1.31513 * 120.00096 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00175 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47039 * 120.00162 * 8 6 4 11 11 H 1.48504 * 109.46861 * 240.00121 * 8 6 4 12 12 N 1.46493 * 109.46836 * 119.99861 * 2 1 3 13 13 C 1.46494 * 120.00444 * 59.72574 * 12 2 1 14 14 S 1.65608 * 119.99916 * 239.99895 * 12 2 1 15 15 O 1.42100 * 106.40059 * 23.26834 * 14 12 2 16 16 O 1.42096 * 106.40050 * 156.18867 * 14 12 2 17 17 N 1.65599 * 107.21718 * 269.72928 * 14 12 2 18 18 C 1.47430 * 125.64634 * 269.69173 * 17 14 12 19 19 C 1.55130 * 104.72253 * 155.81951 * 18 17 14 20 20 C 1.55159 * 101.48543 * 37.29234 * 19 18 17 21 21 H 1.08998 * 110.71781 * 82.69606 * 20 19 18 22 22 O 1.42901 * 110.87150 * 205.89649 * 20 19 18 23 23 C 1.47021 * 125.64930 * 90.00066 * 17 14 12 24 24 H 1.09001 * 109.47192 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47559 * 300.00236 * 1 2 3 26 26 H 1.09007 * 109.47281 * 60.00494 * 1 2 3 27 27 H 0.96996 * 120.00861 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.47693 * 270.27497 * 13 12 2 29 29 H 1.09003 * 109.47006 * 30.27410 * 13 12 2 30 30 H 1.09004 * 109.47665 * 150.27102 * 13 12 2 31 31 H 1.08998 * 110.36241 * 274.74505 * 18 17 14 32 32 H 1.08994 * 110.36756 * 37.06935 * 18 17 14 33 33 H 1.09003 * 111.18987 * 279.18768 * 19 18 17 34 34 H 1.08997 * 110.93552 * 155.28828 * 19 18 17 35 35 H 0.96702 * 113.99839 * 293.61651 * 22 20 19 36 36 H 1.09002 * 109.87847 * 300.43242 * 23 17 14 37 37 H 1.08997 * 109.88485 * 61.45065 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3224 -1.1198 -4.0079 9 1 3.1483 -2.2858 -3.6037 10 1 1.1677 -1.5868 -4.8164 11 1 3.1472 -0.1859 -4.8161 12 7 2.0182 -0.6906 1.1962 13 6 1.6594 -2.0913 1.4311 14 16 2.9703 0.1143 2.2863 15 8 2.6950 1.4978 2.1148 16 8 2.8177 -0.5606 3.5274 17 7 4.5441 -0.1104 1.8223 18 6 5.4213 -1.2100 2.2636 19 6 6.4837 -1.3416 1.1409 20 6 6.7071 0.1435 0.7513 21 1 7.4127 0.6190 1.4326 22 8 7.1598 0.2529 -0.5997 23 6 5.2997 0.7573 0.9070 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 0.7094 1.1617 -3.4844 28 1 0.7311 -2.1381 2.0004 29 1 1.5251 -2.5973 0.4750 30 1 2.4550 -2.5810 1.9927 31 1 5.8970 -0.9585 3.2116 32 1 4.8524 -2.1349 2.3573 33 1 6.0966 -1.9130 0.2972 34 1 7.4017 -1.7875 1.5237 35 1 8.0398 -0.1182 -0.7509 36 1 4.8027 0.7956 -0.0623 37 1 5.3748 1.7611 1.3250 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407976932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:49 Heat of formation + Delta-G solvation = -144.035128 kcal Electronic energy + Delta-G solvation = -21609.772939 eV Core-core repulsion = 18320.093712 eV Total energy + Delta-G solvation = -3289.679228 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79184 -38.41428 -37.91324 -36.97142 -36.57665 -34.52811 -31.08271 -30.96137 -29.49745 -27.28192 -27.03158 -23.53612 -22.57500 -22.15592 -20.04036 -18.91419 -18.79387 -18.37555 -18.18358 -17.16299 -16.54642 -15.90423 -15.40307 -15.25842 -14.95186 -14.89093 -14.63996 -14.47932 -13.88665 -13.76482 -13.46699 -13.33217 -13.26882 -13.19205 -13.01934 -12.78650 -12.70101 -12.53969 -12.39699 -12.21000 -12.15798 -11.92677 -11.69147 -11.21436 -10.87007 -10.51840 -10.06536 -9.67593 -8.10455 -6.25103 -0.42754 1.42754 1.45238 1.55300 1.91615 2.43891 2.51186 3.04532 3.18142 3.51480 3.55131 3.74854 4.04657 4.16288 4.30892 4.53825 4.56737 4.66371 4.75693 4.80972 4.84254 4.93355 4.94088 4.95025 5.08671 5.14207 5.22072 5.25810 5.38830 5.59551 5.70584 5.84253 6.08501 6.26731 6.83539 6.98137 7.44504 8.94493 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.009246 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.521505 B = 3027.649865 C = 4171.404997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.273 3.727 3 H 0.020 0.980 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.286 1.286 12 N -0.998 5.998 13 C 0.101 3.899 14 S 2.808 3.192 15 O -1.014 7.014 16 O -0.997 6.997 17 N -1.017 6.017 18 C 0.112 3.888 19 C -0.151 4.151 20 C 0.105 3.895 21 H 0.105 0.895 22 O -0.579 6.579 23 C 0.117 3.883 24 H 0.045 0.955 25 H 0.018 0.982 26 H 0.070 0.930 27 H 0.263 0.737 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.123 0.877 35 H 0.401 0.599 36 H 0.048 0.952 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.702 -6.646 7.030 15.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.169 3.831 3 H 0.038 0.962 4 C -0.565 4.565 5 H 0.084 0.916 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.785 3.215 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.213 1.213 12 N -0.839 5.839 13 C -0.044 4.044 14 S 2.819 3.181 15 O -0.999 6.999 16 O -0.981 6.981 17 N -0.859 5.859 18 C -0.012 4.012 19 C -0.190 4.190 20 C 0.045 3.955 21 H 0.122 0.878 22 O -0.388 6.388 23 C -0.009 4.009 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.252 0.748 36 H 0.067 0.933 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.657 -5.750 7.625 15.069 hybrid contribution 0.347 -0.428 -1.287 1.400 sum 12.004 -6.178 6.338 14.914 Atomic orbital electron populations 1.21936 0.97712 1.00144 0.99955 1.18390 0.92037 0.91200 0.81496 0.96171 1.21585 1.31306 1.12948 0.90618 0.91617 1.25682 0.95181 0.95635 1.01849 1.70018 1.37505 1.23958 1.24250 0.85492 0.78012 0.78639 0.79359 1.18819 1.20655 1.21252 1.57720 1.64745 1.22752 1.38700 1.21382 1.00418 0.80473 1.02163 1.00875 0.72072 0.72406 0.72764 1.93523 1.84522 1.34596 1.87220 1.93520 1.86187 1.76429 1.41960 1.58890 1.28401 1.38091 1.60502 1.22273 0.91739 0.88744 0.98460 1.23513 1.00216 0.96803 0.98419 1.22750 0.93322 0.95307 0.84117 0.87784 1.86536 1.40187 1.84485 1.27576 1.21560 0.93057 0.93360 0.92946 0.93593 0.96252 0.91136 0.92742 0.92835 0.90575 0.90719 0.89067 0.90238 0.91028 0.85847 0.74834 0.93321 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 8.97 71.98 0.65 -6.15 16 2 C 0.27 13.90 2.62 44.25 0.12 14.01 16 3 H 0.02 1.19 6.90 -2.39 -0.02 1.17 16 4 C -0.53 -27.52 7.99 25.60 0.20 -27.32 16 5 H 0.07 3.33 7.35 -2.91 -0.02 3.31 16 6 C 0.02 0.87 5.30 84.65 0.45 1.31 16 7 N -0.92 -52.20 11.32 21.44 0.24 -51.96 16 8 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 9 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 12 N -1.00 -42.51 3.12 -520.48 -1.62 -44.13 16 13 C 0.10 3.53 9.27 127.77 1.19 4.72 16 14 S 2.81 114.55 6.31 -56.49 -0.36 114.19 16 15 O -1.01 -49.22 16.28 -128.00 -2.08 -51.30 16 16 O -1.00 -40.34 16.79 -128.00 -2.15 -42.49 16 17 N -1.02 -33.73 3.75 -506.01 -1.90 -35.63 16 18 C 0.11 2.62 6.99 86.93 0.61 3.23 16 19 C -0.15 -2.84 6.83 32.06 0.22 -2.62 16 20 C 0.11 2.35 4.32 31.78 0.14 2.49 16 21 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 22 O -0.58 -13.89 13.40 -148.98 -2.00 -15.88 16 23 C 0.12 3.85 6.76 86.73 0.59 4.43 16 24 H 0.04 2.08 7.66 -2.39 -0.02 2.06 16 25 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 3.81 6.07 -2.38 -0.01 3.80 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.08 2.71 7.04 -2.39 -0.02 2.69 16 30 H 0.07 2.18 7.79 -2.38 -0.02 2.16 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.40 4.94 9.12 -74.06 -0.68 4.27 16 36 H 0.05 1.99 8.06 -2.39 -0.02 1.97 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -71.55 314.31 -3.29 -74.84 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.39 Total: 13.61 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.15 Total: -5.90 kcal Atomic # 7 Polarization: -128.44 SS G_CDS: -3.28 Total: -131.72 kcal Atomic # 8 Polarization: -103.45 SS G_CDS: -6.23 Total: -109.67 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: 114.55 SS G_CDS: -0.36 Total: 114.19 kcal Total: -71.55 -3.29 -74.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407976932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.194 kcal (2) G-P(sol) polarization free energy of solvation -71.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds