Wall clock time and date at job start Tue Mar 31 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.47068 * 136.05360 * 269.63289 * 17 14 12 19 19 C 1.53237 * 88.08011 * 207.19741 * 18 17 14 20 20 C 1.52995 * 114.32765 * 220.46658 * 19 18 17 21 21 O 1.42909 * 114.01325 * 87.71690 * 19 18 17 22 22 C 1.47065 * 136.06093 * 89.99686 * 17 14 12 23 23 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 24 24 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 25 25 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 28 28 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 29 29 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 30 30 H 1.09000 * 113.46758 * 321.93120 * 18 17 14 31 31 H 1.08997 * 113.46435 * 92.37340 * 18 17 14 32 32 H 1.09004 * 109.46880 * 153.75943 * 20 19 18 33 33 H 1.08999 * 109.47541 * 273.76507 * 20 19 18 34 34 H 1.09001 * 109.46994 * 33.76748 * 20 19 18 35 35 H 0.96703 * 113.99884 * 86.39259 * 21 19 18 36 36 H 1.09000 * 113.46836 * 267.63255 * 22 17 14 37 37 H 1.09005 * 113.46367 * 38.06532 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8180 18 6 5.6059 -1.0823 2.0981 19 6 6.6280 0.0212 1.8054 20 6 7.8477 -0.4448 1.0080 21 8 6.9640 0.8192 2.9424 22 6 5.4958 0.5978 0.9443 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7088 1.1614 -3.4843 27 1 0.7375 -2.1444 1.9993 28 1 2.4628 -2.5819 1.9863 29 1 1.5294 -2.5969 0.4707 30 1 5.6208 -1.4223 3.1336 31 1 5.6382 -1.9045 1.3833 32 1 8.2637 0.3974 0.4550 33 1 8.6002 -0.8380 1.6915 34 1 7.5481 -1.2258 0.3091 35 1 7.6776 0.4532 3.4827 36 1 5.4985 0.2277 -0.0809 37 1 5.4173 1.6836 1.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407984285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:18 Heat of formation + Delta-G solvation = -81.912482 kcal Electronic energy + Delta-G solvation = -21386.252370 eV Core-core repulsion = 18099.266982 eV Total energy + Delta-G solvation = -3286.985388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.87186 -36.60516 -36.11222 -35.24061 -35.16915 -32.60917 -30.42051 -29.07935 -25.97641 -25.70947 -25.33674 -25.19627 -20.73688 -20.37869 -18.30116 -17.18138 -16.74518 -16.58890 -16.44173 -15.59989 -15.14354 -14.68112 -14.42939 -14.08270 -13.50273 -13.29875 -12.94839 -12.72853 -12.46975 -12.39331 -11.97773 -11.84608 -11.77424 -11.54768 -11.42189 -11.36998 -11.21570 -10.98140 -10.89227 -10.44180 -10.42134 -10.22456 -10.09595 -9.85477 -9.33215 -8.79499 -8.51041 -7.94122 -6.11660 -4.20511 1.20437 3.20450 3.28845 3.30648 3.44296 3.89945 4.19173 4.31052 4.32512 4.73275 4.84016 4.91592 5.18482 5.48510 5.51881 5.57131 5.65055 5.67709 5.85772 5.88641 6.01426 6.17746 6.18712 6.33132 6.65808 6.72532 6.89170 6.90798 7.12085 7.50108 7.58892 7.61166 7.77254 8.04036 8.24604 8.82845 9.45692 10.93396 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017334 B = 0.007655 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.963578 B = 3657.096234 C = 4607.036659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.266 3.734 3 H 0.058 0.942 4 C -0.525 4.525 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.992 5.992 13 C 0.108 3.892 14 S 2.803 3.197 15 O -0.973 6.973 16 O -0.993 6.993 17 N -1.037 6.037 18 C 0.102 3.898 19 C 0.087 3.913 20 C -0.165 4.165 21 O -0.533 6.533 22 C 0.142 3.858 23 H 0.012 0.988 24 H 0.092 0.908 25 H 0.032 0.968 26 H 0.263 0.737 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.377 0.623 36 H 0.101 0.899 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.610 -5.051 5.789 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.076 0.924 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.724 3.276 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.834 5.834 13 C -0.038 4.038 14 S 2.815 3.185 15 O -0.958 6.958 16 O -0.977 6.977 17 N -0.875 5.875 18 C -0.025 4.025 19 C 0.043 3.957 20 C -0.224 4.224 21 O -0.338 6.338 22 C 0.016 3.984 23 H 0.031 0.969 24 H 0.111 0.889 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.224 0.776 36 H 0.119 0.881 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.470 -4.017 6.248 12.838 hybrid contribution 0.659 -1.130 -1.089 1.702 sum 11.130 -5.148 5.159 13.304 Atomic orbital electron populations 1.22049 0.97945 0.99638 1.00757 1.18735 0.91923 0.92739 0.80303 0.92432 1.21407 1.31850 1.13053 0.90167 0.91932 1.24944 0.94987 0.94984 0.98996 1.69896 1.36187 1.22603 1.23712 0.86478 0.78652 0.79535 0.82897 1.19852 1.20977 1.20956 1.57881 1.64131 1.21419 1.40006 1.21153 0.98849 0.82140 1.01694 1.01228 0.71049 0.73318 0.72935 1.93573 1.83178 1.32209 1.86831 1.93522 1.85600 1.76552 1.42075 1.60586 1.27183 1.38741 1.60985 1.23107 0.84767 0.92772 1.01849 1.22576 0.93031 0.92269 0.87806 1.22218 0.97002 1.02391 1.00750 1.86582 1.58464 1.49740 1.39060 1.22545 0.82708 0.99144 0.93957 0.96887 0.88912 0.94889 0.92665 0.93919 0.93425 0.90277 0.90367 0.89439 0.91150 0.91911 0.90621 0.77565 0.88087 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.97 37.16 0.33 -3.18 16 2 C 0.27 6.64 2.62 -69.08 -0.18 6.46 16 3 H 0.06 1.60 6.91 -51.93 -0.36 1.24 16 4 C -0.53 -13.44 7.99 -34.44 -0.28 -13.72 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -24.33 11.32 55.43 0.63 -23.70 16 8 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 9 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 N -0.99 -21.50 3.12 -115.85 -0.36 -21.86 16 13 C 0.11 2.00 9.28 59.85 0.56 2.56 16 14 S 2.80 59.82 6.64 -107.50 -0.71 59.11 16 15 O -0.97 -24.03 16.70 -57.17 -0.95 -24.98 16 16 O -0.99 -22.00 17.21 -57.17 -0.98 -22.98 16 17 N -1.04 -18.26 4.29 -125.32 -0.54 -18.80 16 18 C 0.10 1.34 8.13 -8.64 -0.07 1.27 16 19 C 0.09 1.03 2.03 -90.25 -0.18 0.84 16 20 C -0.17 -1.35 9.54 37.15 0.35 -1.00 16 21 O -0.53 -6.57 13.55 -35.23 -0.48 -7.04 16 22 C 0.14 2.19 8.17 -8.51 -0.07 2.12 16 23 H 0.01 0.28 8.14 -51.92 -0.42 -0.14 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 25 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 29 H 0.08 1.47 7.02 -51.93 -0.36 1.10 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 0.98 7.94 -51.93 -0.41 0.57 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.58 7.90 -51.93 -0.41 0.17 16 35 H 0.38 2.69 9.04 45.56 0.41 3.10 16 36 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 318.66 15.07 4.80 4.80 Total: -1.00 -33.48 318.66 -7.98 -41.46 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -4.73 Total: 2.04 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 0.37 Total: -3.09 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.27 Total: -64.37 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.42 Total: -55.01 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 59.82 SS G_CDS: -0.71 Total: 59.11 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.48 -7.98 -41.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407984285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.454 kcal (2) G-P(sol) polarization free energy of solvation -33.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds