Wall clock time and date at job start Tue Mar 31 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47202 * 2 1 4 4 C 1.50696 * 109.46908 * 239.99922 * 2 1 3 5 5 H 1.07996 * 120.00258 * 239.99831 * 4 2 1 6 6 C 1.37880 * 120.00074 * 60.00448 * 4 2 1 7 7 N 1.31521 * 119.99949 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46899 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47127 * 119.99920 * 8 6 4 11 11 H 1.48495 * 109.46810 * 239.99849 * 8 6 4 12 12 N 1.46499 * 109.46868 * 120.00366 * 2 1 3 13 13 C 1.46499 * 120.00225 * 59.99572 * 12 2 1 14 14 S 1.65600 * 119.99691 * 239.99718 * 12 2 1 15 15 O 1.42102 * 106.40015 * 23.54405 * 14 12 2 16 16 O 1.42097 * 106.40174 * 156.45969 * 14 12 2 17 17 N 1.65599 * 107.22069 * 270.00182 * 14 12 2 18 18 C 1.47068 * 136.05360 * 269.63289 * 17 14 12 19 19 C 1.53237 * 88.08011 * 207.19741 * 18 17 14 20 20 C 1.52995 * 114.32765 * 220.46658 * 19 18 17 21 21 O 1.42909 * 114.01325 * 87.71690 * 19 18 17 22 22 C 1.47065 * 136.06093 * 89.99686 * 17 14 12 23 23 H 1.09007 * 109.47040 * 300.00243 * 1 2 3 24 24 H 1.09002 * 109.46830 * 59.99794 * 1 2 3 25 25 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 26 26 H 0.96995 * 120.00084 * 179.97438 * 7 6 4 27 27 H 1.09002 * 109.47391 * 270.00005 * 13 12 2 28 28 H 1.09001 * 109.46813 * 150.00061 * 13 12 2 29 29 H 1.09004 * 109.47041 * 30.00189 * 13 12 2 30 30 H 1.09000 * 113.46758 * 321.93120 * 18 17 14 31 31 H 1.08997 * 113.46435 * 92.37340 * 18 17 14 32 32 H 1.09004 * 109.46880 * 153.75943 * 20 19 18 33 33 H 1.08999 * 109.47541 * 273.76507 * 20 19 18 34 34 H 1.09001 * 109.46994 * 33.76748 * 20 19 18 35 35 H 0.96703 * 113.99884 * 86.39259 * 21 19 18 36 36 H 1.09000 * 113.46836 * 267.63255 * 22 17 14 37 37 H 1.09005 * 113.46367 * 38.06532 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 3.1483 -2.2857 -3.6038 10 1 1.1678 -1.5865 -4.8165 11 1 3.1472 -0.1857 -4.8160 12 7 2.0183 -0.6907 1.1961 13 6 1.6643 -2.0932 1.4280 14 16 2.9704 0.1141 2.2862 15 8 2.6903 1.4972 2.1193 16 8 2.8227 -0.5647 3.5258 17 7 4.5438 -0.1043 1.8180 18 6 5.6059 -1.0823 2.0981 19 6 6.6280 0.0212 1.8054 20 6 7.8477 -0.4448 1.0080 21 8 6.9640 0.8192 2.9424 22 6 5.4958 0.5978 0.9443 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7088 1.1614 -3.4843 27 1 0.7375 -2.1444 1.9993 28 1 2.4628 -2.5819 1.9863 29 1 1.5294 -2.5969 0.4707 30 1 5.6208 -1.4223 3.1336 31 1 5.6382 -1.9045 1.3833 32 1 8.2637 0.3974 0.4550 33 1 8.6002 -0.8380 1.6915 34 1 7.5481 -1.2258 0.3091 35 1 7.6776 0.4532 3.4827 36 1 5.4985 0.2277 -0.0809 37 1 5.4173 1.6836 1.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407984285.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:18 Heat of formation + Delta-G solvation = -109.996267 kcal Electronic energy + Delta-G solvation = -21387.470174 eV Core-core repulsion = 18099.266982 eV Total energy + Delta-G solvation = -3288.203192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94224 -38.37913 -37.91034 -36.96486 -36.24827 -34.52527 -31.31538 -30.96179 -27.32353 -27.11796 -27.02621 -26.59119 -22.61154 -21.41331 -19.83914 -18.76072 -18.40390 -18.33716 -17.57663 -17.20758 -16.63279 -16.07753 -15.56576 -15.38173 -15.09832 -14.91951 -14.50992 -14.12425 -13.77029 -13.67190 -13.48455 -13.30419 -13.24315 -13.19733 -13.01659 -12.79132 -12.74566 -12.68885 -12.50193 -12.19401 -12.16569 -11.92943 -11.48539 -11.21284 -10.83694 -10.52100 -10.13009 -9.66303 -8.09773 -6.25878 -0.42105 1.45569 1.47776 1.58521 1.91985 2.45005 2.55649 2.98656 3.18389 3.18890 3.40488 3.83124 4.07180 4.10345 4.54725 4.55914 4.60435 4.65096 4.73751 4.80439 4.85030 4.93784 4.95559 4.98350 5.04543 5.12059 5.21320 5.33548 5.55834 5.59816 5.68290 5.83271 6.07701 6.26335 6.83626 6.93765 7.44171 8.95442 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017334 B = 0.007655 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.963578 B = 3657.096234 C = 4607.036659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.271 3.729 3 H 0.019 0.981 4 C -0.528 4.528 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.964 3.036 9 H -0.259 1.259 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.999 5.999 13 C 0.102 3.898 14 S 2.813 3.187 15 O -1.018 7.018 16 O -1.005 7.005 17 N -1.049 6.049 18 C 0.097 3.903 19 C 0.108 3.892 20 C -0.156 4.156 21 O -0.558 6.558 22 C 0.124 3.876 23 H 0.015 0.985 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.263 0.737 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.400 0.600 36 H 0.111 0.889 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.821 -7.324 5.499 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.167 3.833 3 H 0.037 0.963 4 C -0.567 4.567 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.790 3.210 9 H -0.183 1.183 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.840 5.840 13 C -0.043 4.043 14 S 2.826 3.174 15 O -1.003 7.003 16 O -0.989 6.989 17 N -0.890 5.890 18 C -0.028 4.028 19 C 0.064 3.936 20 C -0.214 4.214 21 O -0.367 6.367 22 C -0.001 4.001 23 H 0.034 0.966 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.251 0.749 36 H 0.129 0.871 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.692 -6.322 5.994 15.394 hybrid contribution 0.029 -0.400 -0.924 1.008 sum 12.721 -6.721 5.069 15.255 Atomic orbital electron populations 1.21946 0.97945 1.00096 0.99822 1.18416 0.91940 0.91256 0.81671 0.96326 1.21620 1.31647 1.13081 0.90380 0.91007 1.25772 0.95143 0.95596 1.02075 1.70043 1.37451 1.24131 1.24340 0.85412 0.78024 0.78670 0.78902 1.18258 1.21119 1.20961 1.57777 1.64994 1.22546 1.38706 1.21355 1.00239 0.80484 1.02240 1.00589 0.71801 0.72241 0.72742 1.93507 1.84434 1.35002 1.87355 1.93491 1.86310 1.76428 1.42674 1.60361 1.26313 1.40761 1.61571 1.23519 0.82991 0.93162 1.03134 1.22412 0.93452 0.90429 0.87300 1.22177 0.95568 1.02735 1.00911 1.86529 1.59832 1.50584 1.39725 1.22877 0.84094 0.98032 0.95111 0.96595 0.91080 0.93583 0.92726 0.93205 0.90923 0.90195 0.89660 0.86875 0.90946 0.89095 0.89645 0.74859 0.87096 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 8.97 71.98 0.65 -6.23 16 2 C 0.27 13.79 2.62 44.25 0.12 13.90 16 3 H 0.02 1.10 6.91 -2.39 -0.02 1.08 16 4 C -0.53 -26.83 7.99 25.60 0.20 -26.63 16 5 H 0.07 3.45 7.33 -2.91 -0.02 3.42 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -51.44 11.32 21.45 0.24 -51.20 16 8 Si 0.96 40.55 29.54 68.60 2.03 42.58 16 9 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 10 H -0.29 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 N -1.00 -43.19 3.12 -520.44 -1.62 -44.81 16 13 C 0.10 3.63 9.28 127.77 1.19 4.82 16 14 S 2.81 121.21 6.64 -56.49 -0.37 120.83 16 15 O -1.02 -52.42 16.70 -128.00 -2.14 -54.56 16 16 O -1.00 -44.07 17.21 -128.00 -2.20 -46.27 16 17 N -1.05 -36.18 4.29 -550.89 -2.37 -38.55 16 18 C 0.10 2.29 8.13 83.09 0.68 2.96 16 19 C 0.11 2.29 2.03 -10.55 -0.02 2.27 16 20 C -0.16 -1.93 9.54 71.98 0.69 -1.24 16 21 O -0.56 -12.59 13.55 -148.98 -2.02 -14.61 16 22 C 0.12 3.75 8.17 83.18 0.68 4.43 16 23 H 0.01 0.72 8.14 -2.38 -0.02 0.70 16 24 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 25 H 0.05 2.10 7.67 -2.39 -0.02 2.08 16 26 H 0.26 13.98 8.31 -92.71 -0.77 13.20 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 29 H 0.08 2.82 7.02 -2.38 -0.02 2.80 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.11 2.09 7.94 -2.39 -0.02 2.07 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.08 0.94 7.90 -2.39 -0.02 0.92 16 35 H 0.40 4.53 9.04 -74.06 -0.67 3.86 16 36 H 0.11 3.05 8.10 -2.39 -0.02 3.03 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -73.26 318.66 -3.43 -76.69 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.40 Total: 14.45 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.62 Total: -4.56 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -3.75 Total: -134.56 kcal Atomic # 8 Polarization: -109.08 SS G_CDS: -6.36 Total: -115.44 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 121.21 SS G_CDS: -0.37 Total: 120.83 kcal Total: -73.26 -3.43 -76.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407984285.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.306 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds