Wall clock time and date at job start Tue Mar 31 2020 01:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46500 * 109.47476 * 239.99811 * 2 1 3 13 13 C 1.46496 * 119.99601 * 300.00370 * 12 2 1 14 14 S 1.65599 * 119.99891 * 120.00118 * 12 2 1 15 15 O 1.42102 * 106.40019 * 203.54082 * 14 12 2 16 16 O 1.42100 * 106.40527 * 336.45922 * 14 12 2 17 17 N 1.65588 * 107.21972 * 90.00258 * 14 12 2 18 18 C 1.47072 * 136.05814 * 269.63044 * 17 14 12 19 19 C 1.53751 * 87.88981 * 152.96332 * 18 17 14 20 20 C 1.53003 * 114.08919 * 139.78234 * 19 18 17 21 21 O 1.42904 * 114.39375 * 272.67719 * 19 18 17 22 22 C 1.47074 * 136.05928 * 89.99649 * 17 14 12 23 23 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 25 25 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 26 26 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47553 * 90.00034 * 13 12 2 28 28 H 1.09002 * 109.46634 * 209.99596 * 13 12 2 29 29 H 1.08998 * 109.47408 * 329.99340 * 13 12 2 30 30 H 1.09008 * 113.46652 * 267.69536 * 18 17 14 31 31 H 1.08991 * 113.46929 * 38.12972 * 18 17 14 32 32 H 1.08998 * 109.46923 * 326.55497 * 20 19 18 33 33 H 1.08995 * 109.47310 * 86.56135 * 20 19 18 34 34 H 1.09003 * 109.46853 * 206.56123 * 20 19 18 35 35 H 0.96708 * 113.99660 * 273.58443 * 21 19 18 36 36 H 1.08994 * 113.46948 * 321.86845 * 22 17 14 37 37 H 1.09003 * 113.46461 * 92.30766 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1142 -2.2861 15 8 2.8229 -0.5646 -3.5258 16 8 2.6905 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8179 18 6 5.4978 0.6016 -0.9492 19 6 6.1986 -0.7473 -0.7187 20 6 7.7262 -0.6623 -0.6999 21 8 5.6594 -1.5161 0.3585 22 6 5.6039 -1.0858 -2.0927 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9031 -0.5278 4.4376 27 1 0.7377 -2.1444 -1.9992 28 1 2.4629 -2.5819 -1.9862 29 1 1.5295 -2.5968 -0.4707 30 1 6.1149 1.3261 -1.4807 31 1 5.0420 1.0150 -0.0496 32 1 8.0553 0.1140 -1.3907 33 1 8.0642 -0.4194 0.3075 34 1 8.1472 -1.6209 -1.0032 35 1 6.0362 -1.3005 1.2227 36 1 5.2386 -2.1099 -2.1673 37 1 6.2490 -0.8061 -2.9257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000407984288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:21 Heat of formation + Delta-G solvation = -69.829566 kcal Electronic energy + Delta-G solvation = -21750.344874 eV Core-core repulsion = 18463.883441 eV Total energy + Delta-G solvation = -3286.461433 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.72939 -36.75219 -36.31233 -35.33077 -34.90825 -32.45971 -30.30952 -29.97517 -25.98218 -25.69934 -25.46346 -24.98633 -20.86465 -20.10516 -18.36412 -17.34770 -16.96859 -16.46060 -16.33077 -15.71679 -15.12919 -14.63006 -14.36461 -14.04533 -13.61448 -13.23229 -12.98388 -12.80197 -12.50796 -12.33397 -12.25615 -12.10217 -11.91014 -11.67284 -11.63238 -11.49513 -11.31736 -11.16796 -10.92099 -10.54914 -10.33025 -10.10890 -9.68650 -9.54508 -9.33868 -8.80805 -8.60983 -8.04336 -6.11592 -4.10705 1.09416 3.24446 3.35549 3.36910 3.40278 4.02071 4.10401 4.36543 4.45158 4.69447 4.92102 5.00403 5.19410 5.47671 5.56104 5.59121 5.63116 5.72897 5.85762 5.91699 6.05412 6.12229 6.17106 6.23827 6.30642 6.42968 6.59835 6.70244 6.74971 6.91842 7.33503 7.42405 7.68390 7.97897 8.49657 8.97677 9.49943 11.00673 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.008990 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.550453 B = 3113.670391 C = 3973.745300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.238 3.762 3 H 0.053 0.947 4 C -0.517 4.517 5 H 0.089 0.911 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.873 3.127 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.263 1.263 12 N -0.978 5.978 13 C 0.108 3.892 14 S 2.807 3.193 15 O -0.991 6.991 16 O -0.981 6.981 17 N -1.040 6.040 18 C 0.102 3.898 19 C 0.092 3.908 20 C -0.167 4.167 21 O -0.517 6.517 22 C 0.140 3.860 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.383 0.617 36 H 0.080 0.920 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 -0.161 -7.745 11.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.134 3.866 3 H 0.071 0.929 4 C -0.556 4.556 5 H 0.107 0.893 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.223 1.223 11 H -0.188 1.188 12 N -0.819 5.819 13 C -0.038 4.038 14 S 2.819 3.181 15 O -0.976 6.976 16 O -0.965 6.965 17 N -0.878 5.878 18 C -0.025 4.025 19 C 0.048 3.952 20 C -0.226 4.226 21 O -0.322 6.322 22 C 0.014 3.986 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.098 0.902 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.146 0.105 -8.879 12.050 hybrid contribution -0.306 0.863 1.078 1.414 sum 7.840 0.967 -7.801 11.102 Atomic orbital electron populations 1.22418 0.98897 1.01339 0.99067 1.19078 0.90825 0.93245 0.83482 0.92926 1.21261 1.31997 1.14347 0.87985 0.89287 1.24865 0.95642 0.96382 0.95839 1.69879 1.45497 1.40058 0.97811 0.87096 0.81001 0.84278 0.77357 1.20421 1.22281 1.18824 1.57461 1.63818 1.21647 1.38956 1.21207 0.98790 0.81613 1.02222 1.01018 0.71310 0.73058 0.72756 1.93540 1.85719 1.76511 1.41802 1.93560 1.83559 1.32458 1.86961 1.60348 1.25669 1.39068 1.62725 1.23234 0.89468 0.95497 0.94260 1.22542 0.91187 0.91947 0.89548 1.22251 0.94519 1.02815 1.02980 1.86637 1.66786 1.61422 1.17374 1.22477 0.87261 0.93892 0.94978 0.92255 0.93342 0.94817 0.92675 0.93907 0.93051 0.89713 0.89936 0.89473 0.91232 0.91657 0.91457 0.76895 0.90174 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 8.67 37.16 0.32 -3.19 16 2 C 0.24 5.69 2.21 -69.08 -0.15 5.53 16 3 H 0.05 1.34 5.97 -51.93 -0.31 1.03 16 4 C -0.52 -13.67 8.57 -34.44 -0.30 -13.96 16 5 H 0.09 2.55 7.58 -52.49 -0.40 2.15 16 6 C 0.08 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 8 Si 0.87 21.37 24.37 -169.99 -4.14 17.23 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.24 16 10 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.98 -20.73 3.12 -115.86 -0.36 -21.09 16 13 C 0.11 2.01 9.28 59.84 0.56 2.57 16 14 S 2.81 57.18 6.64 -107.50 -0.71 56.47 16 15 O -0.99 -20.92 17.21 -57.17 -0.98 -21.90 16 16 O -0.98 -22.48 16.70 -57.17 -0.95 -23.43 16 17 N -1.04 -17.81 4.29 -124.98 -0.54 -18.35 16 18 C 0.10 1.48 8.17 -8.37 -0.07 1.42 16 19 C 0.09 1.18 2.04 -89.97 -0.18 0.99 16 20 C -0.17 -1.46 9.54 37.16 0.35 -1.10 16 21 O -0.52 -8.14 13.57 -35.23 -0.48 -8.61 16 22 C 0.14 1.90 8.15 -8.50 -0.07 1.83 16 23 H 0.06 1.24 7.67 -51.93 -0.40 0.84 16 24 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.87 7.79 -51.93 -0.40 0.46 16 29 H 0.08 1.65 7.02 -51.93 -0.36 1.29 16 30 H 0.08 0.96 7.93 -51.92 -0.41 0.54 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.38 4.87 9.04 45.56 0.41 5.29 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -33.67 311.86 -6.92 -40.59 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -4.59 Total: 3.43 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 0.37 Total: -3.95 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.12 Total: -64.51 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -2.42 Total: -53.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Atomic # 16 Polarization: 57.18 SS G_CDS: -0.71 Total: 56.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.67 -6.92 -40.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407984288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.239 kcal (2) G-P(sol) polarization free energy of solvation -33.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds