Wall clock time and date at job start Tue Mar 31 2020 01:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46934 * 2 1 4 4 C 1.50703 * 109.47122 * 119.99590 * 2 1 3 5 5 H 1.08002 * 119.99685 * 119.99733 * 4 2 1 6 6 C 1.37877 * 120.00216 * 300.00546 * 4 2 1 7 7 N 1.31516 * 120.00069 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99806 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46845 * 90.00621 * 8 6 4 10 10 H 1.48503 * 109.47399 * 210.00111 * 8 6 4 11 11 H 1.48498 * 109.47295 * 330.00717 * 8 6 4 12 12 N 1.46500 * 109.47476 * 239.99811 * 2 1 3 13 13 C 1.46496 * 119.99601 * 300.00370 * 12 2 1 14 14 S 1.65599 * 119.99891 * 120.00118 * 12 2 1 15 15 O 1.42102 * 106.40019 * 203.54082 * 14 12 2 16 16 O 1.42100 * 106.40527 * 336.45922 * 14 12 2 17 17 N 1.65588 * 107.21972 * 90.00258 * 14 12 2 18 18 C 1.47072 * 136.05814 * 269.63044 * 17 14 12 19 19 C 1.53751 * 87.88981 * 152.96332 * 18 17 14 20 20 C 1.53003 * 114.08919 * 139.78234 * 19 18 17 21 21 O 1.42904 * 114.39375 * 272.67719 * 19 18 17 22 22 C 1.47074 * 136.05928 * 89.99649 * 17 14 12 23 23 H 1.08996 * 109.47365 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47451 * 300.00317 * 1 2 3 25 25 H 1.09001 * 109.46962 * 60.00003 * 1 2 3 26 26 H 0.97000 * 119.99667 * 179.97438 * 7 6 4 27 27 H 1.08994 * 109.47553 * 90.00034 * 13 12 2 28 28 H 1.09002 * 109.46634 * 209.99596 * 13 12 2 29 29 H 1.08998 * 109.47408 * 329.99340 * 13 12 2 30 30 H 1.09008 * 113.46652 * 267.69536 * 18 17 14 31 31 H 1.08991 * 113.46929 * 38.12972 * 18 17 14 32 32 H 1.08998 * 109.46923 * 326.55497 * 20 19 18 33 33 H 1.08995 * 109.47310 * 86.56135 * 20 19 18 34 34 H 1.09003 * 109.46853 * 206.56123 * 20 19 18 35 35 H 0.96708 * 113.99660 * 273.58443 * 21 19 18 36 36 H 1.08994 * 113.46948 * 321.86845 * 22 17 14 37 37 H 1.09003 * 113.46461 * 92.30766 * 22 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6257 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9769 1.9955 3.9070 11 1 0.8488 2.1772 1.4922 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 16 2.9705 0.1142 -2.2861 15 8 2.8229 -0.5646 -3.5258 16 8 2.6905 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8179 18 6 5.4978 0.6016 -0.9492 19 6 6.1986 -0.7473 -0.7187 20 6 7.7262 -0.6623 -0.6999 21 8 5.6594 -1.5161 0.3585 22 6 5.6039 -1.0858 -2.0927 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9031 -0.5278 4.4376 27 1 0.7377 -2.1444 -1.9992 28 1 2.4629 -2.5819 -1.9862 29 1 1.5295 -2.5968 -0.4707 30 1 6.1149 1.3261 -1.4807 31 1 5.0420 1.0150 -0.0496 32 1 8.0553 0.1140 -1.3907 33 1 8.0642 -0.4194 0.3075 34 1 8.1472 -1.6209 -1.0032 35 1 6.0362 -1.3005 1.2227 36 1 5.2386 -2.1099 -2.1673 37 1 6.2490 -0.8061 -2.9257 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000407984288.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:21 Heat of formation + Delta-G solvation = -99.323979 kcal Electronic energy + Delta-G solvation = -21751.623848 eV Core-core repulsion = 18463.883441 eV Total energy + Delta-G solvation = -3287.740407 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84676 -38.43253 -38.06992 -37.00091 -36.10714 -34.48642 -31.81746 -31.26186 -27.37431 -27.02904 -26.94146 -26.61680 -22.68568 -21.24378 -19.85712 -19.05155 -18.49610 -18.37299 -17.54703 -17.24821 -16.75257 -16.05006 -15.59420 -15.37806 -15.13486 -14.94020 -14.57153 -14.20391 -14.08946 -13.89433 -13.66533 -13.55690 -13.32783 -13.21401 -13.16274 -12.99714 -12.74415 -12.68804 -12.43183 -12.29210 -12.02049 -11.51632 -11.45709 -11.27345 -10.75203 -10.71327 -10.05238 -9.75767 -8.24879 -6.26541 -0.45601 1.29317 1.37687 1.45104 1.87073 2.32452 2.47271 3.03310 3.08276 3.17536 3.48801 3.90569 3.94765 4.15283 4.39482 4.51837 4.53596 4.58079 4.60325 4.65446 4.76043 4.82947 4.84791 4.89695 4.99677 5.05404 5.07520 5.21631 5.31658 5.48928 5.51510 5.62880 5.85733 6.39869 6.79727 6.96136 7.36471 8.90227 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.008990 C = 0.007045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.550453 B = 3113.670391 C = 3973.745300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.242 3.758 3 H 0.037 0.963 4 C -0.505 4.505 5 H 0.059 0.941 6 C 0.030 3.970 7 N -0.933 5.933 8 Si 0.921 3.079 9 H -0.264 1.264 10 H -0.295 1.295 11 H -0.260 1.260 12 N -0.987 5.987 13 C 0.105 3.895 14 S 2.818 3.182 15 O -1.001 7.001 16 O -1.011 7.011 17 N -1.053 6.053 18 C 0.093 3.907 19 C 0.097 3.903 20 C -0.155 4.155 21 O -0.550 6.550 22 C 0.134 3.866 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.265 0.735 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.391 0.609 36 H 0.073 0.927 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.885 0.281 -8.940 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.136 3.864 3 H 0.055 0.945 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.169 4.169 7 N -0.573 5.573 8 Si 0.749 3.251 9 H -0.190 1.190 10 H -0.222 1.222 11 H -0.185 1.185 12 N -0.827 5.827 13 C -0.040 4.040 14 S 2.830 3.170 15 O -0.985 6.985 16 O -0.996 6.996 17 N -0.895 5.895 18 C -0.033 4.033 19 C 0.053 3.947 20 C -0.214 4.214 21 O -0.358 6.358 22 C 0.009 3.991 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.137 0.863 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.241 0.759 36 H 0.091 0.909 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.960 0.535 -10.091 13.506 hybrid contribution -0.447 0.659 1.408 1.617 sum 8.513 1.195 -8.684 12.219 Atomic orbital electron populations 1.22378 0.97382 1.02272 0.99754 1.18842 0.92018 0.92219 0.83346 0.94514 1.21299 1.30794 1.13104 0.89197 0.92332 1.25473 0.96973 0.98835 0.95641 1.69989 1.47223 1.41766 0.98303 0.86300 0.80208 0.81371 0.77236 1.18981 1.22225 1.18497 1.57470 1.64825 1.22485 1.37964 1.21323 1.00357 0.80391 1.01959 1.00446 0.71851 0.72227 0.72441 1.93518 1.86303 1.76493 1.42216 1.93512 1.84513 1.34209 1.87316 1.60161 1.25379 1.40725 1.63204 1.23588 0.89169 0.97144 0.93353 1.22668 0.93647 0.90071 0.88279 1.22182 0.90622 1.04285 1.04296 1.86592 1.68120 1.62375 1.18672 1.22910 0.86475 0.92931 0.96795 0.91274 0.93895 0.92824 0.92598 0.91947 0.91573 0.91126 0.86332 0.92238 0.88968 0.90828 0.90372 0.75946 0.90879 0.85265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.85 8.67 71.98 0.62 -6.23 16 2 C 0.24 11.49 2.21 44.25 0.10 11.58 16 3 H 0.04 1.88 5.97 -2.39 -0.01 1.87 16 4 C -0.50 -27.12 8.57 25.60 0.22 -26.90 16 5 H 0.06 3.46 7.58 -2.91 -0.02 3.44 16 6 C 0.03 1.64 5.45 84.65 0.46 2.11 16 7 N -0.93 -54.84 13.96 21.45 0.30 -54.54 16 8 Si 0.92 43.81 24.37 68.60 1.67 45.48 16 9 H -0.26 -11.92 6.87 99.48 0.68 -11.24 16 10 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 11 H -0.26 -12.18 6.53 99.48 0.65 -11.53 16 12 N -0.99 -41.54 3.12 -520.46 -1.62 -43.17 16 13 C 0.11 3.86 9.28 127.77 1.19 5.05 16 14 S 2.82 113.05 6.64 -56.49 -0.37 112.67 16 15 O -1.00 -41.03 17.21 -128.00 -2.20 -43.23 16 16 O -1.01 -46.07 16.70 -128.00 -2.14 -48.20 16 17 N -1.05 -34.96 4.29 -549.81 -2.36 -37.32 16 18 C 0.09 2.59 8.17 83.27 0.68 3.27 16 19 C 0.10 2.32 2.04 -10.37 -0.02 2.30 16 20 C -0.16 -2.19 9.54 71.98 0.69 -1.50 16 21 O -0.55 -17.37 13.57 -148.98 -2.02 -19.40 16 22 C 0.13 3.34 8.15 83.18 0.68 4.01 16 23 H 0.07 2.80 7.67 -2.39 -0.02 2.78 16 24 H 0.04 1.88 3.27 -2.39 -0.01 1.88 16 25 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 29 H 0.07 2.77 7.02 -2.39 -0.02 2.75 16 30 H 0.12 2.41 7.93 -2.38 -0.02 2.39 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 0.92 7.89 -2.39 -0.02 0.90 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.39 10.17 9.04 -74.05 -0.67 9.51 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.13 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -72.54 311.86 -3.81 -76.34 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.33 Total: 17.67 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 4.61 Total: -6.31 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -3.68 Total: -135.03 kcal Atomic # 8 Polarization: -104.47 SS G_CDS: -6.36 Total: -110.83 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.67 Total: 45.48 kcal Atomic # 16 Polarization: 113.05 SS G_CDS: -0.37 Total: 112.67 kcal Total: -72.54 -3.81 -76.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000407984288.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.980 kcal (2) G-P(sol) polarization free energy of solvation -72.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds