Wall clock time and date at job start Mon Mar 30 2020 23:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 C 1.52995 * 109.47260 * 120.00631 * 2 1 3 5 5 H 1.09010 * 109.47030 * 185.63640 * 4 2 1 6 6 S 1.81399 * 109.47463 * 65.63710 * 4 2 1 7 7 C 1.81408 * 102.99833 * 67.15634 * 6 4 2 8 8 C 1.50703 * 109.46785 * 174.76167 * 7 6 4 9 9 H 1.07999 * 119.99969 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99517 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99750 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00113 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46819 * 90.00462 * 12 10 8 14 14 H 1.48498 * 109.46914 * 210.00150 * 12 10 8 15 15 H 1.48497 * 109.47316 * 330.00034 * 12 10 8 16 16 C 1.50700 * 109.47011 * 305.63608 * 4 2 1 17 17 O 1.21252 * 120.00287 * 95.00219 * 16 4 2 18 18 C 1.47168 * 120.00048 * 275.00255 * 16 4 2 19 19 C 1.39852 * 120.17248 * 180.02562 * 18 16 4 20 20 C 1.37889 * 119.82620 * 180.30045 * 19 18 16 21 21 C 1.38403 * 120.16876 * 359.43989 * 20 19 18 22 22 C 1.38401 * 120.35169 * 0.56239 * 21 20 19 23 23 C 1.37888 * 120.17104 * 359.71922 * 22 21 20 24 24 H 1.09007 * 109.47214 * 185.42581 * 1 2 3 25 25 H 1.09002 * 109.46890 * 305.41503 * 1 2 3 26 26 H 1.09000 * 109.47528 * 65.42161 * 1 2 3 27 27 H 1.09002 * 109.46886 * 240.00571 * 2 1 3 28 28 H 1.08998 * 109.47331 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47114 * 300.00465 * 3 2 1 30 30 H 1.09002 * 109.46742 * 60.00482 * 3 2 1 31 31 H 1.08995 * 109.47227 * 294.76284 * 7 6 4 32 32 H 1.09002 * 109.46897 * 54.76196 * 7 6 4 33 33 H 0.96996 * 119.99801 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.08570 * 0.02562 * 19 18 16 35 35 H 1.08000 * 119.91586 * 179.72038 * 20 19 18 36 36 H 1.08000 * 119.82302 * 180.27719 * 21 20 19 37 37 H 1.07997 * 119.91866 * 179.69551 * 22 21 20 38 38 H 1.08002 * 120.08724 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.1254 -0.6348 1.3010 6 16 1.5765 -2.4732 1.1674 7 6 2.5666 -3.0930 -0.2206 8 6 2.3877 -4.5847 -0.3385 9 1 1.7426 -5.1075 0.3520 10 6 3.0477 -5.2819 -1.3281 11 7 2.8912 -6.5837 -1.4315 12 14 4.1629 -4.3774 -2.5230 13 1 5.5432 -4.3357 -1.9769 14 1 4.1682 -5.0858 -3.8281 15 1 3.6639 -2.9919 -2.7139 16 6 1.4270 -0.0962 2.4757 17 8 0.4244 -0.5734 2.9627 18 6 2.0452 1.0935 3.0824 19 6 1.4797 1.6763 4.2210 20 6 2.0613 2.7946 4.7799 21 6 3.2085 3.3335 4.2239 22 6 3.7742 2.7626 3.0972 23 6 3.2012 1.6475 2.5231 24 1 -0.3634 -1.0231 0.0972 25 1 -0.3633 0.5955 0.8375 26 1 -0.3634 0.4274 -0.9345 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 2.2391 -2.6137 -1.1431 32 1 3.6184 -2.8657 -0.0466 33 1 3.3558 -7.0742 -2.1274 34 1 0.5871 1.2541 4.6587 35 1 1.6232 3.2484 5.6566 36 1 3.6619 4.2068 4.6689 37 1 4.6666 3.1918 2.6662 38 1 3.6436 1.2034 1.6436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:41 Heat of formation + Delta-G solvation = -18.398123 kcal Electronic energy + Delta-G solvation = -19248.285469 eV Core-core repulsion = 16374.903534 eV Total energy + Delta-G solvation = -2873.381935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37351 -38.24662 -35.94350 -33.04570 -31.57520 -31.17861 -29.36824 -28.29471 -27.06305 -24.12250 -22.82649 -22.46109 -21.00933 -19.14581 -17.52975 -17.02023 -16.25113 -15.88645 -15.47764 -15.15364 -14.68318 -14.29314 -14.09172 -13.76446 -13.64757 -13.37319 -13.18294 -12.79997 -12.65190 -12.52516 -12.12088 -11.97549 -11.74658 -11.39674 -11.12439 -10.94100 -10.89399 -10.73695 -10.37703 -10.16233 -9.63243 -9.49418 -9.20333 -9.09672 -8.89385 -8.72376 -6.78137 -6.18809 -4.21004 0.53526 1.14937 2.17382 2.52922 3.18949 3.26466 3.26831 3.58337 3.63683 4.01384 4.29218 4.56808 4.69503 4.76547 4.80160 4.95110 5.11902 5.12220 5.17638 5.18310 5.36392 5.44686 5.60296 5.63372 5.72431 5.75729 5.92999 6.00356 6.11046 6.14428 6.19512 6.21847 6.32914 6.54592 6.59483 6.65119 6.69368 7.41637 7.57262 8.29506 8.84603 9.36631 10.93378 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.004599 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.753991 B = 6086.921007 C = 6315.507271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.158 4.158 4 C -0.123 4.123 5 H 0.101 0.899 6 S -0.211 6.211 7 C 0.037 3.963 8 C -0.513 4.513 9 H 0.084 0.916 10 C 0.080 3.920 11 N -0.891 5.891 12 Si 0.877 3.123 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.266 1.266 16 C 0.420 3.580 17 O -0.426 6.426 18 C -0.156 4.156 19 C -0.062 4.062 20 C -0.135 4.135 21 C -0.092 4.092 22 C -0.136 4.136 23 C -0.073 4.073 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.268 0.732 34 H 0.134 0.866 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 22.336 6.962 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 C -0.216 4.216 4 C -0.252 4.252 5 H 0.120 0.880 6 S 0.019 5.981 7 C -0.111 4.111 8 C -0.552 4.552 9 H 0.102 0.898 10 C -0.124 4.124 11 N -0.528 5.528 12 Si 0.704 3.296 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.190 1.190 16 C 0.295 3.705 17 O -0.299 6.299 18 C -0.158 4.158 19 C -0.081 4.081 20 C -0.153 4.153 21 C -0.110 4.110 22 C -0.154 4.154 23 C -0.091 4.091 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.332 21.305 7.771 22.680 hybrid contribution 1.736 1.028 -1.521 2.527 sum 2.068 22.333 6.249 23.283 Atomic orbital electron populations 1.21965 0.93832 1.04197 1.00993 1.21238 0.97562 0.95460 0.95966 1.22329 1.00778 0.96062 1.02454 1.23863 1.03951 0.99884 0.97510 0.88049 1.87177 1.61936 1.00728 1.48241 1.21517 0.95643 1.01077 0.92858 1.20453 1.29978 0.88087 1.16684 0.89809 1.24853 0.96067 0.94698 0.96796 1.69869 1.42676 1.06617 1.33663 0.86821 0.81446 0.80349 0.81005 1.19919 1.20792 1.19044 1.21758 0.83489 0.82139 0.83140 1.90531 1.21781 1.58942 1.58634 1.20494 0.98314 0.98664 0.98373 1.21449 0.98924 0.94193 0.93506 1.21137 0.96691 0.96757 1.00760 1.21405 0.95214 0.99062 0.95351 1.21143 1.00649 0.96838 0.96783 1.21809 0.93733 0.95017 0.98564 0.89923 0.93292 0.92646 0.89577 0.92292 0.92182 0.91933 0.94536 0.95336 0.92218 0.84852 0.85485 0.85733 0.85430 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.50 37.16 0.32 -1.95 16 2 C -0.08 -1.18 2.65 -90.62 -0.24 -1.42 16 3 C -0.16 -1.74 7.52 37.16 0.28 -1.46 16 4 C -0.12 -2.00 2.05 -27.89 -0.06 -2.06 16 5 H 0.10 1.50 6.75 -51.92 -0.35 1.15 16 6 S -0.21 -4.58 19.12 -107.50 -2.06 -6.63 16 7 C 0.04 0.88 4.42 36.01 0.16 1.04 16 8 C -0.51 -14.67 9.68 -34.44 -0.33 -15.00 16 9 H 0.08 2.65 7.96 -52.49 -0.42 2.23 16 10 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 11 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 12 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 16 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 16 C 0.42 6.63 4.71 -30.68 -0.14 6.49 16 17 O -0.43 -7.91 15.63 5.58 0.09 -7.82 16 18 C -0.16 -1.99 4.94 -105.06 -0.52 -2.50 16 19 C -0.06 -0.71 9.60 -39.11 -0.38 -1.09 16 20 C -0.14 -1.21 10.03 -39.65 -0.40 -1.61 16 21 C -0.09 -0.74 10.04 -39.46 -0.40 -1.14 16 22 C -0.14 -1.17 10.03 -39.65 -0.40 -1.57 16 23 C -0.07 -0.77 7.06 -39.10 -0.28 -1.04 16 24 H 0.08 1.43 7.00 -51.92 -0.36 1.07 16 25 H 0.05 0.71 7.07 -51.93 -0.37 0.35 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.34 6.98 -51.93 -0.36 0.98 16 28 H 0.06 0.56 6.51 -51.93 -0.34 0.23 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.68 5.29 -51.93 -0.27 0.41 16 31 H 0.04 0.85 6.37 -51.93 -0.33 0.52 16 32 H 0.03 0.66 7.57 -51.92 -0.39 0.26 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.13 1.53 7.65 -52.48 -0.40 1.12 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.14 1.33 4.24 -52.49 -0.22 1.11 16 LS Contribution 315.75 15.07 4.76 4.76 Total: -1.00 -31.84 315.75 -8.69 -40.52 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.10 Total: 0.38 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.48 Total: -21.11 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 16 Polarization: -4.58 SS G_CDS: -2.06 Total: -6.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.84 -8.69 -40.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.125 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds