Wall clock time and date at job start Mon Mar 30 2020 23:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 C 1.52995 * 109.47260 * 120.00631 * 2 1 3 5 5 H 1.09010 * 109.47030 * 185.63640 * 4 2 1 6 6 S 1.81399 * 109.47463 * 65.63710 * 4 2 1 7 7 C 1.81408 * 102.99833 * 67.15634 * 6 4 2 8 8 C 1.50703 * 109.46785 * 174.76167 * 7 6 4 9 9 H 1.07999 * 119.99969 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99517 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99750 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00113 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46819 * 90.00462 * 12 10 8 14 14 H 1.48498 * 109.46914 * 210.00150 * 12 10 8 15 15 H 1.48497 * 109.47316 * 330.00034 * 12 10 8 16 16 C 1.50700 * 109.47011 * 305.63608 * 4 2 1 17 17 O 1.21252 * 120.00287 * 95.00219 * 16 4 2 18 18 C 1.47168 * 120.00048 * 275.00255 * 16 4 2 19 19 C 1.39852 * 120.17248 * 180.02562 * 18 16 4 20 20 C 1.37889 * 119.82620 * 180.30045 * 19 18 16 21 21 C 1.38403 * 120.16876 * 359.43989 * 20 19 18 22 22 C 1.38401 * 120.35169 * 0.56239 * 21 20 19 23 23 C 1.37888 * 120.17104 * 359.71922 * 22 21 20 24 24 H 1.09007 * 109.47214 * 185.42581 * 1 2 3 25 25 H 1.09002 * 109.46890 * 305.41503 * 1 2 3 26 26 H 1.09000 * 109.47528 * 65.42161 * 1 2 3 27 27 H 1.09002 * 109.46886 * 240.00571 * 2 1 3 28 28 H 1.08998 * 109.47331 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47114 * 300.00465 * 3 2 1 30 30 H 1.09002 * 109.46742 * 60.00482 * 3 2 1 31 31 H 1.08995 * 109.47227 * 294.76284 * 7 6 4 32 32 H 1.09002 * 109.46897 * 54.76196 * 7 6 4 33 33 H 0.96996 * 119.99801 * 180.02562 * 11 10 8 34 34 H 1.08004 * 120.08570 * 0.02562 * 19 18 16 35 35 H 1.08000 * 119.91586 * 179.72038 * 20 19 18 36 36 H 1.08000 * 119.82302 * 180.27719 * 21 20 19 37 37 H 1.07997 * 119.91866 * 179.69551 * 22 21 20 38 38 H 1.08002 * 120.08724 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 1 3.1254 -0.6348 1.3010 6 16 1.5765 -2.4732 1.1674 7 6 2.5666 -3.0930 -0.2206 8 6 2.3877 -4.5847 -0.3385 9 1 1.7426 -5.1075 0.3520 10 6 3.0477 -5.2819 -1.3281 11 7 2.8912 -6.5837 -1.4315 12 14 4.1629 -4.3774 -2.5230 13 1 5.5432 -4.3357 -1.9769 14 1 4.1682 -5.0858 -3.8281 15 1 3.6639 -2.9919 -2.7139 16 6 1.4270 -0.0962 2.4757 17 8 0.4244 -0.5734 2.9627 18 6 2.0452 1.0935 3.0824 19 6 1.4797 1.6763 4.2210 20 6 2.0613 2.7946 4.7799 21 6 3.2085 3.3335 4.2239 22 6 3.7742 2.7626 3.0972 23 6 3.2012 1.6475 2.5231 24 1 -0.3634 -1.0231 0.0972 25 1 -0.3633 0.5955 0.8375 26 1 -0.3634 0.4274 -0.9345 27 1 1.8933 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 2.2391 -2.6137 -1.1431 32 1 3.6184 -2.8657 -0.0466 33 1 3.3558 -7.0742 -2.1274 34 1 0.5871 1.2541 4.6587 35 1 1.6232 3.2484 5.6566 36 1 3.6619 4.2068 4.6689 37 1 4.6666 3.1918 2.6662 38 1 3.6436 1.2034 1.6436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413014922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:40 Heat of formation + Delta-G solvation = -36.435806 kcal Electronic energy + Delta-G solvation = -19249.067641 eV Core-core repulsion = 16374.903534 eV Total energy + Delta-G solvation = -2874.164108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.42456 -39.17109 -37.10912 -35.20946 -32.42129 -31.91296 -31.45331 -29.45629 -28.08925 -25.24189 -24.47395 -23.47322 -22.04279 -20.23998 -19.11997 -18.45850 -17.72706 -16.84884 -16.68750 -16.28285 -16.11585 -15.52312 -15.43273 -14.92254 -14.83445 -14.52468 -14.45984 -14.28929 -14.12190 -13.71931 -13.52297 -12.89379 -12.70318 -12.60764 -12.40221 -12.27306 -12.13865 -12.00865 -11.93620 -11.76161 -11.68297 -10.89716 -10.71889 -10.57319 -9.94291 -9.85676 -8.53347 -8.37843 -6.48460 -0.35929 0.44027 0.70961 1.33251 1.36314 1.42180 1.47372 1.90468 2.29410 2.84136 2.85689 2.94998 3.60612 3.70753 3.92662 4.02342 4.06617 4.14206 4.27761 4.34365 4.48580 4.51414 4.57326 4.59595 4.73497 4.76398 4.87092 4.91233 4.95121 5.07768 5.13979 5.29520 5.34515 5.37419 5.39768 5.47297 5.51796 5.96663 6.06216 6.40588 6.55553 7.13914 8.78536 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025998 B = 0.004599 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.753991 B = 6086.921007 C = 6315.507271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.106 4.106 5 H 0.123 0.877 6 S -0.274 6.274 7 C 0.051 3.949 8 C -0.532 4.532 9 H 0.030 0.970 10 C 0.018 3.982 11 N -0.942 5.942 12 Si 0.956 3.044 13 H -0.259 1.259 14 H -0.278 1.278 15 H -0.240 1.240 16 C 0.422 3.578 17 O -0.471 6.471 18 C -0.180 4.180 19 C -0.079 4.079 20 C -0.136 4.136 21 C -0.080 4.080 22 C -0.133 4.133 23 C -0.075 4.075 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.273 0.727 34 H 0.119 0.881 35 H 0.150 0.850 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 26.955 6.272 28.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 C -0.208 4.208 4 C -0.235 4.235 5 H 0.141 0.859 6 S -0.044 6.044 7 C -0.097 4.097 8 C -0.571 4.571 9 H 0.048 0.952 10 C -0.181 4.181 11 N -0.581 5.581 12 Si 0.777 3.223 13 H -0.183 1.183 14 H -0.203 1.203 15 H -0.163 1.163 16 C 0.300 3.700 17 O -0.347 6.347 18 C -0.182 4.182 19 C -0.097 4.097 20 C -0.154 4.154 21 C -0.098 4.098 22 C -0.150 4.150 23 C -0.093 4.093 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.168 0.832 36 H 0.177 0.823 37 H 0.177 0.823 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.114 25.934 7.089 27.066 hybrid contribution 0.817 -0.349 -1.154 1.456 sum 3.931 25.585 5.936 26.557 Atomic orbital electron populations 1.21913 0.94676 1.02136 1.01991 1.21264 0.96915 0.97663 0.94288 1.22292 1.02147 0.93018 1.03379 1.24016 1.05203 0.94978 0.99345 0.85919 1.87377 1.62406 1.06890 1.47715 1.21238 0.96593 0.97934 0.93955 1.20653 1.29483 0.90812 1.16139 0.95214 1.25956 0.97755 0.95534 0.98882 1.70036 1.44227 1.08878 1.34934 0.85588 0.79129 0.79889 0.77692 1.18333 1.20314 1.16299 1.22098 0.82732 0.82774 0.82389 1.90518 1.23768 1.60610 1.59811 1.20260 0.99998 0.98282 0.99698 1.21508 0.99069 0.95452 0.93712 1.21432 0.96983 0.95663 1.01272 1.21873 0.94076 0.99315 0.94543 1.21537 1.01208 0.95735 0.96540 1.21945 0.92806 0.95652 0.98864 0.93323 0.93520 0.90529 0.90325 0.90077 0.90550 0.91761 0.93542 0.93828 0.91809 0.86281 0.83187 0.82271 0.82293 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.50 71.98 0.61 -3.82 16 2 C -0.08 -2.21 2.65 -10.80 -0.03 -2.24 16 3 C -0.15 -2.76 7.52 71.98 0.54 -2.22 16 4 C -0.11 -3.40 2.05 29.85 0.06 -3.34 16 5 H 0.12 3.38 6.75 -2.38 -0.02 3.36 16 6 S -0.27 -12.38 19.12 -56.49 -1.08 -13.46 16 7 C 0.05 2.44 4.42 71.24 0.31 2.75 16 8 C -0.53 -31.77 9.68 25.60 0.25 -31.53 16 9 H 0.03 2.03 7.96 -2.91 -0.02 2.01 16 10 C 0.02 1.07 5.47 84.65 0.46 1.54 16 11 N -0.94 -59.07 13.96 21.45 0.30 -58.78 16 12 Si 0.96 42.23 27.47 68.60 1.88 44.11 16 13 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 14 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 16 C 0.42 13.45 4.71 28.03 0.13 13.58 16 17 O -0.47 -18.48 15.63 -2.94 -0.05 -18.53 16 18 C -0.18 -4.34 4.94 -20.15 -0.10 -4.44 16 19 C -0.08 -1.73 9.60 22.58 0.22 -1.51 16 20 C -0.14 -2.01 10.03 22.23 0.22 -1.78 16 21 C -0.08 -0.90 10.04 22.35 0.22 -0.67 16 22 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 23 C -0.07 -1.31 7.06 22.58 0.16 -1.15 16 24 H 0.05 1.76 7.00 -2.38 -0.02 1.75 16 25 H 0.05 1.38 7.07 -2.39 -0.02 1.36 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.28 6.98 -2.39 -0.02 2.27 16 28 H 0.08 1.15 6.51 -2.39 -0.02 1.14 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.20 5.29 -2.39 -0.01 1.18 16 31 H 0.05 2.12 6.37 -2.39 -0.02 2.11 16 32 H 0.04 1.95 7.57 -2.39 -0.02 1.93 16 33 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 34 H 0.12 2.84 7.65 -2.91 -0.02 2.82 16 35 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 37 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 38 H 0.15 2.21 4.24 -2.91 -0.01 2.20 16 Total: -1.00 -75.26 315.75 5.35 -69.92 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 1.00 Total: 12.96 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 3.29 Total: -36.22 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.11 kcal Atomic # 16 Polarization: -12.38 SS G_CDS: -1.08 Total: -13.46 kcal Total: -75.26 5.35 -69.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.481 kcal (2) G-P(sol) polarization free energy of solvation -75.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds