Wall clock time and date at job start Mon Mar 30 2020 23:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99836 * 2 1 3 5 5 H 1.09002 * 109.47153 * 180.02562 * 4 2 1 6 6 S 1.81396 * 109.47360 * 300.00310 * 4 2 1 7 7 C 1.81405 * 102.99941 * 295.00158 * 6 4 2 8 8 C 1.50701 * 109.47197 * 180.02562 * 7 6 4 9 9 H 1.07998 * 119.99671 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00040 * 179.97438 * 8 7 6 11 11 N 1.31515 * 119.99883 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 119.99968 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47434 * 89.99477 * 12 10 8 14 14 H 1.48502 * 109.47053 * 209.99945 * 12 10 8 15 15 H 1.48505 * 109.46921 * 329.99709 * 12 10 8 16 16 C 1.50699 * 109.47078 * 60.00337 * 4 2 1 17 17 O 1.21257 * 120.00209 * 264.99886 * 16 4 2 18 18 C 1.47169 * 119.99931 * 84.99669 * 16 4 2 19 19 C 1.39849 * 120.17308 * 359.73051 * 18 16 4 20 20 C 1.37887 * 119.82593 * 179.74334 * 19 18 16 21 21 C 1.38411 * 120.16914 * 0.52370 * 20 19 18 22 22 C 1.38402 * 120.34699 * 359.73019 * 21 20 19 23 23 C 1.37883 * 120.17793 * 0.02562 * 22 21 20 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09004 * 109.46880 * 299.99984 * 7 6 4 32 32 H 1.08994 * 109.47264 * 59.99684 * 7 6 4 33 33 H 0.96997 * 119.99792 * 180.02562 * 11 10 8 34 34 H 1.08003 * 120.08497 * 359.97438 * 19 18 16 35 35 H 1.07998 * 119.91692 * 180.27286 * 20 19 18 36 36 H 1.07998 * 119.82249 * 179.69915 * 21 20 19 37 37 H 1.08007 * 119.90926 * 179.97438 * 22 21 20 38 38 H 1.08003 * 120.09247 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 1 3.1301 -0.7217 -1.2490 6 16 1.4354 -2.4315 -1.2493 7 6 2.2551 -3.1542 0.1987 8 6 1.8483 -4.5986 0.3374 9 1 1.1646 -5.0377 -0.3740 10 6 2.3488 -5.3594 1.3726 11 7 3.1817 -4.8247 2.2386 12 14 1.8451 -7.1500 1.5442 13 1 2.7931 -8.0057 0.7864 14 1 1.8679 -7.5354 2.9781 15 1 0.4737 -7.3323 1.0044 16 6 1.5378 -0.0109 -2.4797 17 8 0.5247 -0.3900 -3.0276 18 6 2.2769 1.1431 -3.0163 19 6 3.4426 1.5870 -2.3839 20 6 4.1323 2.6656 -2.8959 21 6 3.6678 3.3154 -4.0263 22 6 2.5120 2.8854 -4.6547 23 6 1.8138 1.8052 -4.1579 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.3361 -3.0920 0.0729 32 1 1.9614 -2.6060 1.0938 33 1 3.5342 -5.3601 2.9667 34 1 3.8037 1.0839 -1.4991 35 1 5.0352 3.0069 -2.4113 36 1 4.2098 4.1626 -4.4197 37 1 2.1557 3.3979 -5.5361 38 1 0.9118 1.4711 -4.6491 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413014928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:43 Heat of formation + Delta-G solvation = -22.513998 kcal Electronic energy + Delta-G solvation = -19187.122054 eV Core-core repulsion = 16313.561641 eV Total energy + Delta-G solvation = -2873.560413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 278.108 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.30439 -38.17376 -35.82662 -33.13845 -31.51511 -31.11993 -28.54584 -28.16569 -26.93176 -24.08168 -23.05317 -22.61070 -20.92445 -19.05706 -17.47629 -16.72692 -15.92268 -15.81511 -15.41423 -15.06043 -14.74101 -14.38210 -14.05506 -13.59131 -13.53644 -13.27474 -12.93309 -12.68154 -12.37903 -12.20805 -12.00501 -11.88073 -11.66625 -11.32539 -11.00766 -10.90128 -10.77418 -10.68005 -10.62086 -9.90206 -9.63345 -9.36661 -9.14704 -9.03292 -8.75198 -8.60769 -6.61879 -6.19509 -4.23134 0.59800 1.20786 2.29520 2.63626 3.26924 3.32565 3.38445 3.69442 3.78559 4.12288 4.36469 4.63373 4.75161 4.83755 4.92111 5.05454 5.17973 5.20753 5.25106 5.30747 5.44602 5.55960 5.68006 5.73989 5.79492 5.89628 6.05061 6.12818 6.17378 6.25285 6.26368 6.28237 6.48648 6.70563 6.75367 7.08831 7.11601 7.65108 7.75638 8.01761 8.78812 9.39942 10.91873 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.030319 B = 0.004130 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.293641 B = 6777.605596 C = 6871.873802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 C -0.157 4.157 4 C -0.112 4.112 5 H 0.100 0.900 6 S -0.251 6.251 7 C 0.081 3.919 8 C -0.511 4.511 9 H 0.067 0.933 10 C 0.066 3.934 11 N -0.893 5.893 12 Si 0.905 3.095 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.270 1.270 16 C 0.419 3.581 17 O -0.428 6.428 18 C -0.155 4.155 19 C -0.072 4.072 20 C -0.136 4.136 21 C -0.093 4.093 22 C -0.136 4.136 23 C -0.064 4.064 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.265 0.735 34 H 0.139 0.861 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 17.564 -8.089 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.215 4.215 4 C -0.242 4.242 5 H 0.118 0.882 6 S -0.021 6.021 7 C -0.065 4.065 8 C -0.550 4.550 9 H 0.085 0.915 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.732 3.268 13 H -0.204 1.204 14 H -0.210 1.210 15 H -0.195 1.195 16 C 0.294 3.706 17 O -0.301 6.301 18 C -0.157 4.157 19 C -0.090 4.090 20 C -0.154 4.154 21 C -0.111 4.111 22 C -0.154 4.154 23 C -0.082 4.082 24 H 0.067 0.933 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.534 16.795 -8.949 19.038 hybrid contribution 0.924 -0.299 1.119 1.481 sum 1.458 16.497 -7.830 18.319 Atomic orbital electron populations 1.21963 0.93917 1.04222 1.00772 1.21213 0.97489 0.95357 0.96145 1.22330 1.00891 0.96106 1.02204 1.23736 1.04031 0.99126 0.97282 0.88182 1.87012 1.66571 1.03474 1.45055 1.21137 0.96933 0.98511 0.89963 1.20657 1.28551 0.93508 1.12285 0.91485 1.24941 0.94718 0.99005 0.95087 1.69950 1.31114 1.36868 1.15207 0.86367 0.79288 0.83815 0.77312 1.20360 1.20984 1.19506 1.21833 0.83683 0.81690 0.83406 1.90518 1.22061 1.61582 1.55916 1.20514 0.98068 0.98975 0.98190 1.21823 0.93166 0.95597 0.98451 1.21150 1.00448 0.96721 0.97063 1.21397 0.95739 0.98886 0.95105 1.21123 0.96060 0.97518 1.00693 1.21439 0.99045 0.93787 0.93943 0.93268 0.89903 0.92929 0.89308 0.92149 0.92279 0.92261 0.94795 0.94359 0.92542 0.84316 0.85415 0.85774 0.85554 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 8.65 37.16 0.32 -2.11 16 2 C -0.08 -1.27 2.65 -90.62 -0.24 -1.52 16 3 C -0.16 -1.90 7.48 37.16 0.28 -1.62 16 4 C -0.11 -1.94 2.09 -27.88 -0.06 -2.00 16 5 H 0.10 1.61 6.76 -51.92 -0.35 1.26 16 6 S -0.25 -5.62 18.90 -107.50 -2.03 -7.65 16 7 C 0.08 2.09 5.39 36.01 0.19 2.29 16 8 C -0.51 -14.41 9.13 -34.44 -0.31 -14.72 16 9 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 10 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 11 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 12 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.42 6.92 4.77 -30.68 -0.15 6.78 16 17 O -0.43 -8.22 15.51 5.58 0.09 -8.13 16 18 C -0.16 -2.07 4.76 -105.06 -0.50 -2.57 16 19 C -0.07 -0.81 7.09 -39.11 -0.28 -1.09 16 20 C -0.14 -1.24 10.03 -39.65 -0.40 -1.64 16 21 C -0.09 -0.79 10.04 -39.46 -0.40 -1.19 16 22 C -0.14 -1.28 10.03 -39.65 -0.40 -1.68 16 23 C -0.06 -0.76 9.60 -39.10 -0.38 -1.14 16 24 H 0.05 0.79 6.82 -51.93 -0.35 0.43 16 25 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.09 1.52 6.92 -51.93 -0.36 1.16 16 28 H 0.06 0.64 6.09 -51.93 -0.32 0.32 16 29 H 0.06 0.71 5.48 -51.93 -0.28 0.43 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.90 8.14 -51.92 -0.42 0.48 16 32 H 0.04 1.01 7.14 -51.93 -0.37 0.63 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.14 1.46 4.34 -52.48 -0.23 1.24 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 38 H 0.13 1.58 7.65 -52.48 -0.40 1.18 16 LS Contribution 318.45 15.07 4.80 4.80 Total: -1.00 -30.89 318.45 -8.94 -39.83 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.10 Total: 0.20 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: -2.41 Total: -20.47 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -24.99 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.09 Total: -8.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -5.62 SS G_CDS: -2.03 Total: -7.65 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.89 -8.94 -39.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413014928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.315 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds